TCONS_00073239 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073239
Unique NameTCONS_00073239
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length228

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073239 ID=TCONS_00073239|Name=TCONS_00073239|organism=Clytia hemisphaerica|type=transcript|length=228bp
TATGGCCAACTTGGTTTAGATTTTCTATAAATATGGCAGCTTGTCCACTT
TTCTTCAGAGTTCAGTTGACATGTAGCACTCAGAGAGTCAACACCTCAAG
ACTTAGTCATTTTCTCAACATAAACTTCAAATAAtgtaaagtcaatcaat
gatagtcttcaaatcattttgacattttggaTTCTCCTTCACAGTTCTTT
CACTCTGGCAAGCTGGTAagcattattt
Run BLAST on NCBI

transcript from alignment at scaffold_88:325213..325440

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073239 ID=TCONS_00073239|Name=TCONS_00073239|organism=Clytia hemisphaerica|type=transcript|length=228bp|location=Sequence derived from alignment at scaffold_88:325213..325440 (Clytia hemisphaerica)
aaataatgctTACCAGCTTGCCAGAGTGAAAGAACTGTGAAGGAGAAtcc aaaatgtcaaaatgatttgaagactatcattgattgactttacaTTATTT GAAGTTTATGTTGAGAAAATGACTAAGTCTTGAGGTGTTGACTCTCTGAG TGCTACATGTCAACTGAACTCTGAAGAAAAGTGGACAAGCTGCCATATTT ATAGAAAATCTAAACCAAGTTGGCCATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045434XLOC_045434Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073239-exon-scaffold_88-1491911889:325213..325440TCONS_00073239-exon-scaffold_88-1491911889:325213..325440Clytia hemisphaericaexon
TCONS_00073239-exon-scaffold_88-1510915933:325213..325440TCONS_00073239-exon-scaffold_88-1510915933:325213..325440Clytia hemisphaericaexon
TCONS_00073239-exon-scaffold_88-1575043694:325213..325440TCONS_00073239-exon-scaffold_88-1575043694:325213..325440Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_88supercontigscaffold_88:325213..325440 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.21279 5.31718 2.04676 0 32.0157 15.8761 15.4225 29.8811 3.69349 1.48098 5.52425 2.06353 8.40475 2.46469 10.5642 1.94666 5.24612 4.81236 8.37318 16.6016 8.43507 6.1715 5.7574 0 23.417 50.1579 8.97198 0 2.4208 4.93283
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073239 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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