TCONS_00073232 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073232
Unique NameTCONS_00073232
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1834

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073232 ID=TCONS_00073232|Name=TCONS_00073232|organism=Clytia hemisphaerica|type=transcript|length=1834bp
attatttctatctttaaaaaagggtgtcagaattagatgagggatgtcga
tattagaccaacttacggtattttTCAACGACATTAACCGTATTTTTTCC
AGCtattatttagaaattttcctgataaactgctacttttaactttcgaa
agctcactttgataaaaaaaatacaGACAGTGCCAAATTTATGGTCCAAA
ATTctttatcaaaatataaaaaatgggTGTTAACCatctattcaaaattt
tattgttttcagaTAGATATAAAAACTCATGTAGACAAACTTGTGACGGT
GGGTTGGCATTCTGGAATCGTAATCAATCCATTTCTAGTCGTGGAATTTG
TTTTTAGTGTCGAGCTGGTAGTCGCTTCAGTCGTTGAAGACCCAGGACCG
ACGCGTCTAGTCCTTCGAGGTCCACCTTGAAGTACTCGATCTCCACGTCG
GCGATTTCGAAAATTAAGTATAATCTTAATTGAggtgttaaagtttttca
atcGTACCATGTAGATGAATGGATTGACACATGAATTGAACGAAATGAGT
ATGGATTGGAGATCCCGTAAAACGTGTCTAGAGACGCAAtccaatatttt
ccaaaaatataacaTAAAAGTCATCGCAACACCAGGGAGATATAACAATA
TGAAAAAGACAATCACTAGAAGATACGTACGTGTTAATCGTTTCTCTTGC
ACTAAACGACGGCGTTGAAAATCCGATGATGCGGATGACGGTAATTGTGC
CGTCATCACTCTCGACTGCCGTCGAAAAAGTTTGTTCATTTGTATAATGA
TAATCACCAAGACAACAAAGCTGGTCAAAATGGCGACACATGCAAATACG
AAATAATACTCGACTGCGCCAACTTTGAAATAGATAAACGGAAACGCGAT
AGAGATAGTCCAAATAATAGCAGTAATGAAAATACATCTTTTCCAGCTAA
AATATAATCGGTATTTGATCGCCCTGGATATAGCAATATATCTATCAATA
GTCAATGTTATTAAACTGATCAAACTGGCCATTCCAGATATAAAATAAGA
CATTCGTAAAATATTATTGACAATCGGTTCCAACATGACTTTATATTCCA
AGTAATGTGTATATACACATAAAGGCATGCTGATACTTCCCATAATAAAA
TCAGCAACAGCAAgattgattaaaaaataattgaacgGATTCCGAAGTTT
TTTCAACGGATCTGCGATAACGGCGACGATAATAAGGCCGTTTCCGATAG
TTGCCACAACCGCGATGACGAAACAACAAATTCCGGTTGTAATCGAAAGT
ACCGGTGGGGCCCATGAGTCGGCACCGCAAGTTGGGTTTCCGACATTTCT
CGACATTTTATCCAAACTTGTtctttttttgtatgaaaatatCTGGTTGG
AATTTTCTGTATTGAACCTCAAGTGGTATGGTTTATTCAGTCATTCCCAA
GTTTTGGTATTGGTTTAGCTTAATGTTTTTTATAGCAATGATTCCAATGA
TTTAATCGATGTCTTCTTTTTCTGGGTGAATAAGGAAAGAAAAGAATTGT
GATTACATTTACGTGTAGACTAGTGCAAAGATCACGCCCACTCGATGACA
AGACGTCAAAATAACTTTCAGAAATAACGTCcatataaaattaaatttga
taaacaattttcaggatgtgtatctgacagggtcgacttttggttatttt
gaacaatttttagggtggaaattagaaaatctttgaatttttcgtctact
tttagcCACTTTTCAgtgtgaaaattggaaaattgaaaaatcgtcAAAAC
AATGTACTGATGTTGAGTTTGATGCAAATAACTG
Run BLAST on NCBI

protein sequence of TCONS_00073232-protein

>TCONS_00073232-protein ID=TCONS_00073232-protein|Name=TCONS_00073232-protein|organism=Clytia hemisphaerica|type=polypeptide|length=359bp
MSRNVGNPTCGADSWAPPVLSITTGICCFVIAVVATIGNGLIIVAVIADP
LKKLRNPFNYFLINLAVADFIMGSISMPLCVYTHYLEYKVMLEPIVNNIL
RMSYFISGMASLISLITLTIDRYIAISRAIKYRLYFSWKRCIFITAIIWT
ISIAFPFIYFKVGAVEYYFVFACVAILTSFVVLVIIIIQMNKLFRRQSRV
MTAQLPSSASSDFQRRRLVQEKRLTRTYLLVIVFFILLYLPGVAMTFMLY
FWKILDCVSRHVLRDLQSILISFNSCVNPFIYMVRLKNFNTSIKIILNFR
NRRRGDRVLQGGPRRTRRVGPGSSTTEATTSSTLKTNSTTRNGLITIPEC
QPTVTSLST
Run BLAST on NCBI

transcript from alignment at scaffold_88:11389..13222

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073232 ID=TCONS_00073232|Name=TCONS_00073232|organism=Clytia hemisphaerica|type=transcript|length=1834bp|location=Sequence derived from alignment at scaffold_88:11389..13222 (Clytia hemisphaerica)
CAGTTATTTGCATCAAACTCAACATCAGTACATTGTTTTgacgatttttc aattttccaattttcacacTGAAAAGTGgctaaaagtagacgaaaaattc aaagattttctaatttccaccctaaaaattgttcaaaataaccaaaagtc gaccctgtcagatacacatcctgaaaattgtttatcaaatttaattttat atgGACGTTATTTCTGAAAGTTATTTTGACGTCTTGTCATCGAGTGGGCG TGATCTTTGCACTAGTCTACACGTAAATGTAATCACAATTCTTTTCTTTC CTTATTCACCCAGAAAAAGAAGACATCGATTAAATCATTGGAATCATTGC TATAAAAAACATTAAGCTAAACCAATACCAAAACTTGGGAATGACTGAAT AAACCATACCACTTGAGGTTCAATACAGAAAATTCCAACCAGatattttc atacaaaaaaagaACAAGTTTGGATAAAATGTCGAGAAATGTCGGAAACC CAACTTGCGGTGCCGACTCATGGGCCCCACCGGTACTTTCGATTACAACC GGAATTTGTTGTTTCGTCATCGCGGTTGTGGCAACTATCGGAAACGGCCT TATTATCGTCGCCGTTATCGCAGATCCGTTGAAAAAACTTCGGAATCcgt tcaattattttttaatcaatcTTGCTGTTGCTGATTTTATTATGGGAAGT ATCAGCATGCCTTTATGTGTATATACACATTACTTGGAATATAAAGTCAT GTTGGAACCGATTGTCAATAATATTTTACGAATGTCTTATTTTATATCTG GAATGGCCAGTTTGATCAGTTTAATAACATTGACTATTGATAGATATATT GCTATATCCAGGGCGATCAAATACCGATTATATTTTAGCTGGAAAAGATG TATTTTCATTACTGCTATTATTTGGACTATCTCTATCGCGTTTCCGTTTA TCTATTTCAAAGTTGGCGCAGTCGAGTATTATTTCGTATTTGCATGTGTC GCCATTTTGACCAGCTTTGTTGTCTTGGTGATTATCATTATACAAATGAA CAAACTTTTTCGACGGCAGTCGAGAGTGATGACGGCACAATTACCGTCAT CCGCATCATCGGATTTTCAACGCCGTCGTTTAGTGCAAGAGAAACGATTA ACACGTACGTATCTTCTAGTGATTGTCTTTTTCATATTGTTATATCTCCC TGGTGTTGCGATGACTTTTAtgttatatttttggaaaatattggaTTGCG TCTCTAGACACGTTTTACGGGATCTCCAATCCATACTCATTTCGTTCAAT TCATGTGTCAATCCATTCATCTACATGGTACgattgaaaaactttaacac cTCAATTAAGATTATACTTAATTTTCGAAATCGCCGACGTGGAGATCGAG TACTTCAAGGTGGACCTCGAAGGACTAGACGCGTCGGTCCTGGGTCTTCA ACGACTGAAGCGACTACCAGCTCGACACTAAAAACAAATTCCACGACTAG AAATGGATTGATTACGATTCCAGAATGCCAACCCACCGTCACAAGTTTGT CTACATGAGTTTTTATATCTAtctgaaaacaataaaattttgaatagatG GTTAACAcccattttttatattttgataaagAATTTTGGACCATAAATTT GGCACTGTCtgtattttttttatcaaagtgagctttcgaaagttaaaagt agcagtttatcaggaaaatttctaaataataGCTGGAAAAAATACGGTTA ATGTCGTTGAaaaataccgtaagttggtctaatatcgacatccctcatct aattctgacacccttttttaaagatagaaataat

Coding sequence (CDS) from alignment at scaffold_88:11389..13222

>TCONS_00073232 ID=TCONS_00073232|Name=TCONS_00073232|organism=Clytia hemisphaerica|type=CDS|length=1080bp|location=Sequence derived from alignment at scaffold_88:11389..13222 (Clytia hemisphaerica)
ATGTCGAGAAATGTCGGAAACCCAACTTGCGGTGCCGACTCATGGGCCCC
ACCGGTACTTTCGATTACAACCGGAATTTGTTGTTTCGTCATCGCGGTTG
TGGCAACTATCGGAAACGGCCTTATTATCGTCGCCGTTATCGCAGATCCG
TTGAAAAAACTTCGGAATCcgttcaattattttttaatcaatcTTGCTGT
TGCTGATTTTATTATGGGAAGTATCAGCATGCCTTTATGTGTATATACAC
ATTACTTGGAATATAAAGTCATGTTGGAACCGATTGTCAATAATATTTTA
CGAATGTCTTATTTTATATCTGGAATGGCCAGTTTGATCAGTTTAATAAC
ATTGACTATTGATAGATATATTGCTATATCCAGGGCGATCAAATACCGAT
TATATTTTAGCTGGAAAAGATGTATTTTCATTACTGCTATTATTTGGACT
ATCTCTATCGCGTTTCCGTTTATCTATTTCAAAGTTGGCGCAGTCGAGTA
TTATTTCGTATTTGCATGTGTCGCCATTTTGACCAGCTTTGTTGTCTTGG
TGATTATCATTATACAAATGAACAAACTTTTTCGACGGCAGTCGAGAGTG
ATGACGGCACAATTACCGTCATCCGCATCATCGGATTTTCAACGCCGTCG
TTTAGTGCAAGAGAAACGATTAACACGTACGTATCTTCTAGTGATTGTCT
TTTTCATATTGTTATATCTCCCTGGTGTTGCGATGACTTTTAtgttatat
ttttggaaaatattggaTTGCGTCTCTAGACACGTTTTACGGGATCTCCA
ATCCATACTCATTTCGTTCAATTCATGTGTCAATCCATTCATCTACATGG
TACgattgaaaaactttaacaccTCAATTAAGATTATACTTAATTTTCGA
AATCGCCGACGTGGAGATCGAGTACTTCAAGGTGGACCTCGAAGGACTAG
ACGCGTCGGTCCTGGGTCTTCAACGACTGAAGCGACTACCAGCTCGACAC
TAAAAACAAATTCCACGACTAGAAATGGATTGATTACGATTCCAGAATGC
CAACCCACCGTCACAAGTTTGTCTACATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045427XLOC_045427Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073232-proteinTCONS_00073232-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073232-exon-scaffold_88-1491911889:11389..13222TCONS_00073232-exon-scaffold_88-1491911889:11389..13222Clytia hemisphaericaexon
TCONS_00073232-exon-scaffold_88-1510915933:11389..13222TCONS_00073232-exon-scaffold_88-1510915933:11389..13222Clytia hemisphaericaexon
TCONS_00073232-exon-scaffold_88-1575043694:11389..13222TCONS_00073232-exon-scaffold_88-1575043694:11389..13222Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_88supercontigscaffold_88:11389..13222 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.283822 0.170321 0.346078 0.290214 0.559403 0.232657 0.645589 0.735782 0.423149 0.432984 0.597219 0.305346 2.52429 4.14679 3.17368 5.28172 0.393349 0.587956 0.13925 0.0971436 0.253306 0.123554 0.75098 1.00137 0.562573 0.711768 3.50259 1.3159 0.290788 0.271578
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000276GPCR_Rhodpsn
IPR017452GPCR_Rhodpsn_7TM
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073232 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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