TCONS_00073231 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073231
Unique NameTCONS_00073231
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length545

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073231 ID=TCONS_00073231|Name=TCONS_00073231|organism=Clytia hemisphaerica|type=transcript|length=545bp
ATAAGCTACTAAGACAATTGAGCGTTAAGGATGCTTTATCGGTGGACGTA
CGGTACTAACAAACACGCGAATTCGGAAGAAATTCAAGATACTTGCCCAA
CTAGGAAacaaaggttgtttttttttgtcaaatcatGAGTAAAATCATCA
TCTTCAAAATCGCTTTATACTACAGGTACTCTCGCTTTATCGAATTTCTT
TTATTCGCatctttttataattcgaacttattaaTAGTCCCTGCCAATGA
AAAACCCTCTCAAattatttctataattcgattcTCTATAGTTCGAACAA
ATAAAATTCATCCCCGTTCGAATCCGAACTAGCAAGAGCAAACTGTACTT
CGTTGCATAATCAAACAAACTAATACAGCGTGTCCAAAATATCCCCCAAA
AACAATGAATTTAGAACAATATGTTATTTTAATTAACGAGAAATGGGATA
CTTAtttattgccaccgcaggaagcctaaagcttccgaggatggcattca
tagcttcacgcataaggaagttgggcaaacatctcataattttgc
Run BLAST on NCBI

transcript from alignment at scaffold_88:6291..6835

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073231 ID=TCONS_00073231|Name=TCONS_00073231|organism=Clytia hemisphaerica|type=transcript|length=545bp|location=Sequence derived from alignment at scaffold_88:6291..6835 (Clytia hemisphaerica)
gcaaaattatgagatgtttgcccaacttccttatgcgtgaagctatgaat
gccatcctcggaagctttaggcttcctgcggtggcaataaaTAAGTATCC
CATTTCTCGTTAATTAAAATAACATATTGTTCTAAATTCATTGTTTTTGG
GGGATATTTTGGACACGCTGTATTAGTTTGTTTGATTATGCAACGAAGTA
CAGTTTGCTCTTGCTAGTTCGGATTCGAACGGGGATGAATTTTATTTGTT
CGAACTATAGAgaatcgaattatagaaataatTTGAGAGGGTTTTTCATT
GGCAGGGACTAttaataagttcgaattataaaaagatGCGAATAAAAGAA
ATTCGATAAAGCGAGAGTACCTGTAGTATAAAGCGATTTTGAAGATGATG
ATTTTACTCatgatttgacaaaaaaaaacaacctttgtTTCCTAGTTGGG
CAAGTATCTTGAATTTCTTCCGAATTCGCGTGTTTGTTAGTACCGTACGT
CCACCGATAAAGCATCCTTAACGCTCAATTGTCTTAGTAGCTTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045426XLOC_045426Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073231-exon-scaffold_88-1491911889:6291..6835TCONS_00073231-exon-scaffold_88-1491911889:6291..6835Clytia hemisphaericaexon
TCONS_00073231-exon-scaffold_88-1510915933:6291..6835TCONS_00073231-exon-scaffold_88-1510915933:6291..6835Clytia hemisphaericaexon
TCONS_00073231-exon-scaffold_88-1575043694:6291..6835TCONS_00073231-exon-scaffold_88-1575043694:6291..6835Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_88supercontigscaffold_88:6291..6835 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.853613	0.848062	1.2079	0.861656	0	0.136587	1.29412	0.93109	1.33261	2.28317	2.67056	2.81126	2.49412	5.01746	2.61805	7.21289	1.85802	1.99814	0	0	4.14254	3.12835	0.822265	0.376284	3.62331	3.70613	5.87657	7.51141	1.23548	1.06782
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073231 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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