TCONS_00073230 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073230
Unique NameTCONS_00073230
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length247

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073230 ID=TCONS_00073230|Name=TCONS_00073230|organism=Clytia hemisphaerica|type=transcript|length=247bp
tttaagtatATAACATACCTACATGTGTTTTGACGCTTTTTCACTTTATA
ATCACAAGAGCATGAAAAACATATTGGGATATTTTAGCGAAATTTGTAAC
ATCAGTATTATTGAAAGACATGGTATGGCCAAGcataaattttaaattca
taaatacgtggaaacaatttgtagtcatgtgctacctaaattgtgcagac
taccgggctaccttaatggagcagcccgtttgtttctacaaaacctt
Run BLAST on NCBI

transcript from alignment at scaffold_88:1..247

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073230 ID=TCONS_00073230|Name=TCONS_00073230|organism=Clytia hemisphaerica|type=transcript|length=247bp|location=Sequence derived from alignment at scaffold_88:1..247 (Clytia hemisphaerica)
aaggttttgtagaaacaaacgggctgctccattaaggtagcccggtagtc tgcacaatttaggtagcacatgactacaaattgtttccacgtatttatga atttaaaatttatgCTTGGCCATACCATGTCTTTCAATAATACTGATGTT ACAAATTTCGCTAAAATATCCCAATATGTTTTTCATGCTCTTGTGATTAT AAAGTGAAAAAGCGTCAAAACACATGTAGGTATGTTATatacttaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045425XLOC_045425Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073230-exon-scaffold_88-1491911889:1..247TCONS_00073230-exon-scaffold_88-1491911889:1..247Clytia hemisphaericaexon
TCONS_00073230-exon-scaffold_88-1510915933:1..247TCONS_00073230-exon-scaffold_88-1510915933:1..247Clytia hemisphaericaexon
TCONS_00073230-exon-scaffold_88-1575043694:1..247TCONS_00073230-exon-scaffold_88-1575043694:1..247Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_88supercontigscaffold_88:1..247 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0.1804 0 0 2.89097 0 6.29357 4.86186 0 8.25064 7.73513 10.215 1.47775 0 5.41902 9.66112 0 0 13.9972 11.8927 1.88455 11.6223 5.79829 13.9553 0 4.83427 23.6752 12.3907
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073230 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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