TCONS_00073226 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073226
Unique NameTCONS_00073226
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1123

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073226 ID=TCONS_00073226|Name=TCONS_00073226|organism=Clytia hemisphaerica|type=transcript|length=1123bp
aaatatattggaaaatgaaaaaaaataatacattTTTGTTATCAAGTCAG
TCTAATGGAaaataatttccttttttttaggAAGATGGTTTTGAAGACCA
CGCTGAAGATATTTTGAAGAACTATAAAGAATTCAGTGAAAAGAAACCGA
TCAACAAAGAAACAACCAGTACTCTGATTGGAGATTCAAAAGATACTGAt
gacaaaatcaaaaacttgaTCATGAAACAGCAGGAACAAGTTTCCACAGA
TTCTGATAAAAACGCCAAAGCAGGACGACTGGTtgacaatgaaatgaaaa
aattagttttgaaCCAATACAACAATAGAGGCGCTAGTGATGGaagTGAC
GATTCTGATGGTGAATCGGCAGCAATGCCTTCAGGTTTTCAAAATGTGAA
CGCTGAATCGGTAGTGAGAAAACAGCAAGAGCAACGTGACAAGGCGAAAA
AAGCCAGCGACGAGAAGAAAGTGCGTGATAAATTAAACCGTGATGTGCAA
AAACAGAAGAAAGACGATcggaaagagaaagaaaaacaacGAACGCAAAA
AGGGGAACGTCGCAAGTGATGAATAAGAAAGAGCTGATTTTAAAGGAGAG
actttttgagaaaatagtCGGGATGAAGGAGAAAGCTAAGAGACGCTTCA
GTTTCAGTAATTGATTATTGCCACGAGAACTGCATACAAGTGGAAAACTC
TTCCAAAGTTTGTCTGGTATGTACCTCGCACACTTGTAATTTTTAATGGT
CTCCTGAGATTTTGTTGGCTTCTGATCGATCCAAGGTGAATAACCTTTAA
CATTTTGATATGAAACATTCTGGTACAAAGTTTGCATAAAATTGGTATGA
TTATATTTGTTGTATCGAAACTACTGATTTTGCGGTATAAACTTTAGTTT
TGCAAGTTGATATTGTAAGGTGAACTTATAAGAAGCTTTTAGCTTAAAAA
TTAGCATACGACTTTTCTCTTATGTGTGGTGCTACTGAAATGCACAGGTG
TGTCTCCTTATGATCGACATTAATAATATTCATACTGTTCAACAAAAAGT
CAAACGTCTTAGGAAGATATTTTCGAGCAATATTATACTCTTTCAATAAA
AGACacttagaaatttaaaaaat
Run BLAST on NCBI

protein sequence of TCONS_00073226-protein

>TCONS_00073226-protein ID=TCONS_00073226-protein|Name=TCONS_00073226-protein|organism=Clytia hemisphaerica|type=polypeptide|length=115bp
MKQQEQVSTDSDKNAKAGRLVDNEMKKLVLNQYNNRGASDGSDDSDGESA
AMPSGFQNVNAESVVRKQQEQRDKAKKASDEKKVRDKLNRDVQKQKKDDR
KEKEKQRTQKGERRK
Run BLAST on NCBI

transcript from alignment at scaffold_88:366477..372069-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073226 ID=TCONS_00073226|Name=TCONS_00073226|organism=Clytia hemisphaerica|type=transcript|length=5593bp|location=Sequence derived from alignment at scaffold_88:366477..372069- (Clytia hemisphaerica)
AAATATATTGGAAAATGAAAAAAAATAATACATTTTTGTTATCAAGTCAG
TCTAATGGAAAATAATTTCCTTTTTTTTAGGAAGATGGTTTTGAAGACCA
CGCTGAAGATATTTTGAAGAACTATAAAGAATTCAGTGAAAAGAAACCGA
TCAACAAAGAAACAACCAGTACTCTGATTGGAGATTCAAAAGATACTGAT
GACAAAATCAAAAACTTGATCATGAAACAGCAGGAACAAGTTTCCACAGA
TTCTGATAAAAACGCCAAAGCAGGACGACTGGTTGACAATGAAATGAAAA
AATTAGTTTTGAACCAATACAACAATAGAGGCGCTAGTGATGGAAGGTAT
TTTGATTTTTATTACATTGTTTTTTCACTAAAGGGGTCATGAACCAAAAT
TAAATTTGATGCTTGACATCCCTAGATGAAATTCTCTTAAATACTCTTTT
TGCTTTAAAAACATACATATCAGGCTCGCATTATGCTGTCAAATATTGTT
GTCAAAAAATAGAGCCATTGTTTGGGTGCCAAAAGTTGAGCCTGCATATG
TTTATAAAATTTATGCCTATAAAAGGAAAAATGTACGGGAAATTACAGGC
TCATTATGCTTAGCAAACTTTTATTTTCAGCCTCAAATTATGCTTGGTTA
TCATGGTTCCGAAAGTCTTTTTCAAAACTTCGTCAATTTTGGCTGATTTT
TATTTTCACTTTCACTTTTTTATGATTTCATCCACACTCTGAAGGTGTAC
AGTATTCGATTCAAAACTACTTTCATTTTGTATTTTCTTTTAAAATCTAT
AAAAAATACCATACAAAGGAGATGCGTACTCTTAGGTTCCAAATAAACGG
GGGGTTCGAATAAACGGGGGGGTTGGAAAATTTTCTAGATTTTAATAAAC
AGGGGGGACCTAATTGCCGGCGGGGTTGGAAATTGTACTTCTGAAACCCA
AAAATAAGGTAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCGCCTAAATGGAATAGCTTT
TTAAAGAGCTTAAAAGTTTGAAAAAAGTAAAAGACGAAAAGCTTAACAGT
GTAACACGTGATTTGCGAATGTGCAAAATTGTTAAAAAGCAACGTGCTTT
TATGATATTATTTTTGTCATCCCTAAAATATTAAAGGTTTTCAGAAAGTT
ATCATTTTTTAAAACTGACATTACAATCATGGACAAAAGGTTTGTAGACT
TTTGCAATATTTGCAAAATACTTCAATATCGATCAAAGACAAGTTCCCAA
GAGGTTCTGTGTGCTTTCCAAACCCATCCAAAGTCTTTCAAAGTCACCAA
TTGCAGTCTAACCACATGGGCTTGATAAACTGGCTTACACCAGTATCAAA
ACGCTGATTTTTTGCTTGTGGTTCCCTCAAAAGCAATTCAAAAGCAATGC
AACGACTTCAAAAGTGTTTTTCTTAACTTCCCTCCCTTTTCAGACACATT
GAAGAGTCATTTTGCTCTATTTGTCATCATTTGTCTACAACCTTTTGTCC
ATGATTGTAGGGATATAGATGAAAATAGCCCAAATTTGTTCTGAAGGGAT
GAAAAAACCGTTTCAGTTAAGGACACATTCAAGTTATAGGGTTTGAGTTT
GAAGACGGTCACTTAATCATATCATGTTTAACTTATATTAATGAATGTTT
CTTGTTTGTACAATAAAAAATTGTTGCTAGAAAGTTTCAATAAATTGGGC
TCTTCCAGAAAAAATCCGTTCATGGGGGGTGGAGGATGAATTGTCCAGGG
GTGGGGTTATACCCCTGGACAAACATCAAATCAACCCCGTGGACACAAAA
AATTACCCCTGGACATTGGAATTTACCCCCTGGACATTGCAATTTTTTGG
TATTTTTTCAATACCCCTGGACAAACATCAAATCAACCCCGTGGACACAA
AAAATTACCCCTGGACATTGGAATTTACCCCCTGGACATTGCAATTTTTT
GGTATTTTTTCAATACCCCTGGACAATTCAAATTCAAAAAATAATATATC
ATCCACCCCCCATGAACGGATTTTTTCTGGAAGAGCCCATTATTATAGTA
AATCTAATAATACAGTTAAAGTATTCTTAACAAAAGTAAAGACTTTGGAG
GGAATTTAATATGGCTGCGAGCTTTGAAAAATTAAATTTGACGGGAAGTT
ATTTGCCTTAAAATAGATAACATTTGAGGAAGAGAAAACAATAATCTAAA
TTTGGCGGCGGATGGCAGTAAAAGTTACATGTGGATGATTTCGGCCCAAT
CCACCAAATTAAATTTCCGCTAAATTTAATTTTCAAGTTAACCACCAAAT
TAAAAGGACCCTCCCGGCGCTCCAGAAACTTTCGGAGTTTTCAAGAGCAG
CTAAAAAAACACTATTTTCATCTCCGGAAAGTTACTCTTAACACAGCTCC
AGAGTTCCAGTGTAGATCAATTGCCGAAATAGGAGAAAAATGACACTTTT
TACTCCGGACGTTTCTGGAGTGCTGGGAGGGTCCTAAATTGAATTCCCTC
TGAAAAAACTTTTTCGGCCATCCACCAAATTAAATTCCTGCCAAAATTTC
TTCTTTTAATGTAGGTGCAATGTCACGTTGTGTAATCAAAACTGCAGTAA
ATATCTTAATAACTCCATGTTTCAATGGATGCAAGGGGAACAACAATAAT
AATCAAAAGGGCCATTCCAGAGAAAGGATACGTAACGTCACTCTCATTTT
TGACTAAATGCCAGTAGTCCCCTACATAGAGACTGTTGTTCAGCTGGTGG
GCATAGACTCCAATAATTTCAGTTGACAACTGGACAATATCTTGAAATGG
CCCAAAAATTGTGCCCGAAATAAAAGAAATGGTAAACTGGCTGCCAAACA
GCCGACAGTTGTGTACATGTTTGTTCAAGAAATTTCAAGTCAATACTTTC
AATGGTTACACTTGTCTTGGAACGGTGAATCGTCAATCAAATCTTGCTTT
AGCGTTTAGGTGATAAATGTTCTTTTCCTGCTTCACTTTAAATCTGCTAA
TTGTAGCTAAGGTACATTGGTAAGGTTGCCATATATGCAGTGATTGATCT
TGGATGGGACATGCTATCAACTGTTATCATAGATTTCGAGTAATTGAAAC
AATAATAAACTTCTTGTTATCTAGTCTATCTTATTTTTCTTGTCAACACA
AACACATCCATCTTCCAAGTCCAAGCAAAACCAAATGTTTTAACATCTCA
AAAGTGATTCTAGTGAAAGGAGGTTTGTTTTCAACAACATCACGAGTGTG
GTAGTTTGAATGGAATAATATCAATGAAGAACCATAAATTTCAATTTCAA
TTTTGAAGAATCCTTATTGTAGTTGTAGATTTAAAATCTACATCAAGAAT
TATCTTGCTGTTTGCACTTGCAGTAGAAACTTTTGACAAACTTTCACGAG
ACTTTTAATTATCTCCGTTATTTAGATTTCATAAAACAAGTGCGCTAACT
ACTACGGAGCTAATTAGAATCTATACACCGCAAATACTGTCCGATAAGTT
TGCGTGGCGTAATATAACAGAGATAAAACGGCTTATGCAAGAATTTACGC
GGGAAATAATTTCCCGATTCACCGAACATTTAATNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGCCTTCTCTTTA
ACAGCTGAAAATATTCTTAGAGATTAATAAACGGGGGGGGGGTCCTAATA
AGGTCCGGGGGGTTGGAAAATTTTCGAAAAATTAACAAGCGGGGGGGCCC
GTTTATTTGGAACCTAAGAGTAAACACAAATGTATTATTTGAATGATGAA
TTTTCTAAGCTTCGAACTATGCTTATCATTATTTGTATTTTTTTGCAAAT
TTGAGCCTCAGTTTGCTTAAACGTTATGCTTTCTAATAAAAGAGTGTATT
TGAATCACAAAAAATTGTAGAATTTGATTAATGATTACACAGTATCGAAT
AATCCTGTCGGGGGGGATTATTGTGATAATATTGTTAATACATTGAAACA
GCAGAGAGTGACAGTTCCCCATAATATTTTATGTGTGTCTTGTTATCGCT
TCAAATTTGAATTTTAGCTTTTGTTTGTGTTTCAGTGACGATTCTGATGG
TGAATCGGCAGCAATGCCTTCAGGTACCTTTTTACAGTTTTCTATAAAGT
TTAATGTTGACGCTCTCTAATTCCACGTTCTACTATTCAATACGCTCTAG
TATTTGATAATATTGAAAGTCACGGTCAACAAGAAACTCTCATAAGCGAT
GCTCTACTATTGGATACGCTCTTTTATAAGTTTTGTTCAATAAAGCTCTT
TTTTTGTCTTGGCGGAACAAAAGATTTTTCTCAAGCAAATTCTCGTCAAT
ATGTTTTGTATTTTTTGATTCCAAACCAATATAACCTCTTTTCTGAATGT
TGAATGGAAGCAATCATCTAAGAACTGGAAAGCAGTCAAGCTAATTTTAA
ACGAATTCATTGACCGGTTTAATCTATTTATTCCTCCAATTTTTGCTTTC
TCAGGTTTTCAAAATGTGAACGCTGAATCGGTAGTGAGAAAACAGCAAGA
GCAACGTGACAAGGCGAAAAAAGCCAGCGACGAGAAGAAAGTGCGTGATA
AATTAAACCGTGATGTGCAAAAACAGAAGAAAGACGATCGGAAAGAGAAA
GAAAAACAACGAACGCAAAAAGGGGAACGTCGCAAGTGATGAATAAGAAA
GAGCTGATTTTAAAGGAGAGACTTTTTGAGAAAATAGTCGGGATGAAGGA
GAAAGCTAAGAGACGCTTCAGTTTCAGTAATTGATTATTGCCACGAGAAC
TGCATACAAGTGGAAAACTCTTCCAAAGTTTGTCTGGTATGTACCTCGCA
CACTTGTAATTTTTAATGGTCTCCTGAGATTTTGTTGGCTTCTGATCGAT
CCAAGGTGAATAACCTTTAACATTTTGATATGAAACATTCTGGTACAAAG
TTTGCATAAAATTGGTATGATTATATTTGTTGTATCGAAACTACTGATTT
TGCGGTATAAACTTTAGTTTTGCAAGTTGATATTGTAAGGTGAACTTATA
AGAAGCTTTTAGCTTAAAAATTAGCATACGACTTTTCTCTTATGTGTGGT
GCTACTGAAATGCACAGGTGTGTCTCCTTATGATCGACATTAATAATATT
CATACTGTTCAACAAAAAGTCAAACGTCTTAGGAAGATATTTTCGAGCAA
TATTATACTCTTTCAATAAAAGACACTTAGAAATTTAAAAAAT

Coding sequence (CDS) from alignment at scaffold_88:366477..372069-

>TCONS_00073226 ID=TCONS_00073226|Name=TCONS_00073226|organism=Clytia hemisphaerica|type=CDS|length=1044bp|location=Sequence derived from alignment at scaffold_88:366477..372069- (Clytia hemisphaerica)
GTTTTCAAAATGTGAACGCTGAATCGGTAGTGAGAAAACAGCAAGAGCAA
CGTGACAAGGCGAAAAAAGCCAGCGACGAGAAGAAAGTGCGTGATAAATT
AAACCGTGATGTGCAAAAACAGAAGAAAGACGATCGGAAAGAGAAAGAAA
AACAACGAACGCAAAAAGGGGAACGTCGCAAGTGATGACGATTCTGATGG
TGAATCGGCAGCAATGCCTTCAGATGAAACAGCAGGAACAAGTTTCCACA
GATTCTGATAAAAACGCCAAAGCAGGACGACTGGTTGACAATGAAATGAA
AAAATTAGTTTTGAACCAATACAACAATAGAGGCGCTAGTGATGGAAGGT
TTTCAAAATGTGAACGCTGAATCGGTAGTGAGAAAACAGCAAGAGCAACG
TGACAAGGCGAAAAAAGCCAGCGACGAGAAGAAAGTGCGTGATAAATTAA
ACCGTGATGTGCAAAAACAGAAGAAAGACGATCGGAAAGAGAAAGAAAAA
CAACGAACGCAAAAAGGGGAACGTCGCAAGTGATGACGATTCTGATGGTG
AATCGGCAGCAATGCCTTCAGATGAAACAGCAGGAACAAGTTTCCACAGA
TTCTGATAAAAACGCCAAAGCAGGACGACTGGTTGACAATGAAATGAAAA
AATTAGTTTTGAACCAATACAACAATAGAGGCGCTAGTGATGGAAGGTTT
TCAAAATGTGAACGCTGAATCGGTAGTGAGAAAACAGCAAGAGCAACGTG
ACAAGGCGAAAAAAGCCAGCGACGAGAAGAAAGTGCGTGATAAATTAAAC
CGTGATGTGCAAAAACAGAAGAAAGACGATCGGAAAGAGAAAGAAAAACA
ACGAACGCAAAAAGGGGAACGTCGCAAGTGATGACGATTCTGATGGTGAA
TCGGCAGCAATGCCTTCAGATGAAACAGCAGGAACAAGTTTCCACAGATT
CTGATAAAAACGCCAAAGCAGGACGACTGGTTGACAATGAAATGAAAAAA
TTAGTTTTGAACCAATACAACAATAGAGGCGCTAGTGATGGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045422XLOC_045422Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073226-proteinTCONS_00073226-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073226-exon-scaffold_88-1575043694:371724..372069TCONS_00073226-exon-scaffold_88-1575043694:371724..372069Clytia hemisphaericaexon
TCONS_00073226-exon-scaffold_88-1575043694:367597..367634TCONS_00073226-exon-scaffold_88-1575043694:367597..367634Clytia hemisphaericaexon
TCONS_00073226-exon-scaffold_88-1575043694:366477..367215TCONS_00073226-exon-scaffold_88-1575043694:366477..367215Clytia hemisphaericaexon
TCONS_00073226-exon-scaffold_88-1510915933:371724..372069TCONS_00073226-exon-scaffold_88-1510915933:371724..372069Clytia hemisphaericaexon
TCONS_00073226-exon-scaffold_88-1510915933:367597..367634TCONS_00073226-exon-scaffold_88-1510915933:367597..367634Clytia hemisphaericaexon
TCONS_00073226-exon-scaffold_88-1510915933:366477..367215TCONS_00073226-exon-scaffold_88-1510915933:366477..367215Clytia hemisphaericaexon
TCONS_00073226-exon-scaffold_88-1491911889:371724..372069TCONS_00073226-exon-scaffold_88-1491911889:371724..372069Clytia hemisphaericaexon
TCONS_00073226-exon-scaffold_88-1491911889:367597..367634TCONS_00073226-exon-scaffold_88-1491911889:367597..367634Clytia hemisphaericaexon
TCONS_00073226-exon-scaffold_88-1491911889:366477..367215TCONS_00073226-exon-scaffold_88-1491911889:366477..367215Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_88supercontigscaffold_88:366477..372069 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

min expression (5.94175 tpm) - - (51.7173 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
27.2876	26.4961	22.1944	21.7138	51.7173	38.8409	32.3877	33.7782	24.7937	22.1622	19.9381	15.3039	11.7976	11.0187	16.2221	15.2091	25.9628	20.9961	5.94175	8.2038	18.9148	17.9028	41.7462	38.8435	13.7527	18.1878	14.6899	10.2244	28.8654	30.331
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073226 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
10020030040050060070080090010001100Sequence
Match NameE-valueIdentityDescription
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