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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073226 ID=TCONS_00073226|Name=TCONS_00073226|organism=Clytia hemisphaerica|type=transcript|length=1123bp
aaatatattggaaaatgaaaaaaaataatacattTTTGTTATCAAGTCAG
TCTAATGGAaaataatttccttttttttaggAAGATGGTTTTGAAGACCA
CGCTGAAGATATTTTGAAGAACTATAAAGAATTCAGTGAAAAGAAACCGA
TCAACAAAGAAACAACCAGTACTCTGATTGGAGATTCAAAAGATACTGAt
gacaaaatcaaaaacttgaTCATGAAACAGCAGGAACAAGTTTCCACAGA
TTCTGATAAAAACGCCAAAGCAGGACGACTGGTtgacaatgaaatgaaaa
aattagttttgaaCCAATACAACAATAGAGGCGCTAGTGATGGaagTGAC
GATTCTGATGGTGAATCGGCAGCAATGCCTTCAGGTTTTCAAAATGTGAA
CGCTGAATCGGTAGTGAGAAAACAGCAAGAGCAACGTGACAAGGCGAAAA
AAGCCAGCGACGAGAAGAAAGTGCGTGATAAATTAAACCGTGATGTGCAA
AAACAGAAGAAAGACGATcggaaagagaaagaaaaacaacGAACGCAAAA
AGGGGAACGTCGCAAGTGATGAATAAGAAAGAGCTGATTTTAAAGGAGAG
actttttgagaaaatagtCGGGATGAAGGAGAAAGCTAAGAGACGCTTCA
GTTTCAGTAATTGATTATTGCCACGAGAACTGCATACAAGTGGAAAACTC
TTCCAAAGTTTGTCTGGTATGTACCTCGCACACTTGTAATTTTTAATGGT
CTCCTGAGATTTTGTTGGCTTCTGATCGATCCAAGGTGAATAACCTTTAA
CATTTTGATATGAAACATTCTGGTACAAAGTTTGCATAAAATTGGTATGA
TTATATTTGTTGTATCGAAACTACTGATTTTGCGGTATAAACTTTAGTTT
TGCAAGTTGATATTGTAAGGTGAACTTATAAGAAGCTTTTAGCTTAAAAA
TTAGCATACGACTTTTCTCTTATGTGTGGTGCTACTGAAATGCACAGGTG
TGTCTCCTTATGATCGACATTAATAATATTCATACTGTTCAACAAAAAGT
CAAACGTCTTAGGAAGATATTTTCGAGCAATATTATACTCTTTCAATAAA
AGACacttagaaatttaaaaaat Run BLAST on NCBI protein sequence of TCONS_00073226-protein >TCONS_00073226-protein ID=TCONS_00073226-protein|Name=TCONS_00073226-protein|organism=Clytia hemisphaerica|type=polypeptide|length=115bp
MKQQEQVSTDSDKNAKAGRLVDNEMKKLVLNQYNNRGASDGSDDSDGESA
AMPSGFQNVNAESVVRKQQEQRDKAKKASDEKKVRDKLNRDVQKQKKDDR
KEKEKQRTQKGERRK Run BLAST on NCBI transcript from alignment at scaffold_88:366477..372069- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00073226 ID=TCONS_00073226|Name=TCONS_00073226|organism=Clytia hemisphaerica|type=transcript|length=5593bp|location=Sequence derived from alignment at scaffold_88:366477..372069- (Clytia hemisphaerica)
AAATATATTGGAAAATGAAAAAAAATAATACATTTTTGTTATCAAGTCAG
TCTAATGGAAAATAATTTCCTTTTTTTTAGGAAGATGGTTTTGAAGACCA
CGCTGAAGATATTTTGAAGAACTATAAAGAATTCAGTGAAAAGAAACCGA
TCAACAAAGAAACAACCAGTACTCTGATTGGAGATTCAAAAGATACTGAT
GACAAAATCAAAAACTTGATCATGAAACAGCAGGAACAAGTTTCCACAGA
TTCTGATAAAAACGCCAAAGCAGGACGACTGGTTGACAATGAAATGAAAA
AATTAGTTTTGAACCAATACAACAATAGAGGCGCTAGTGATGGAAGGTAT
TTTGATTTTTATTACATTGTTTTTTCACTAAAGGGGTCATGAACCAAAAT
TAAATTTGATGCTTGACATCCCTAGATGAAATTCTCTTAAATACTCTTTT
TGCTTTAAAAACATACATATCAGGCTCGCATTATGCTGTCAAATATTGTT
GTCAAAAAATAGAGCCATTGTTTGGGTGCCAAAAGTTGAGCCTGCATATG
TTTATAAAATTTATGCCTATAAAAGGAAAAATGTACGGGAAATTACAGGC
TCATTATGCTTAGCAAACTTTTATTTTCAGCCTCAAATTATGCTTGGTTA
TCATGGTTCCGAAAGTCTTTTTCAAAACTTCGTCAATTTTGGCTGATTTT
TATTTTCACTTTCACTTTTTTATGATTTCATCCACACTCTGAAGGTGTAC
AGTATTCGATTCAAAACTACTTTCATTTTGTATTTTCTTTTAAAATCTAT
AAAAAATACCATACAAAGGAGATGCGTACTCTTAGGTTCCAAATAAACGG
GGGGTTCGAATAAACGGGGGGGTTGGAAAATTTTCTAGATTTTAATAAAC
AGGGGGGACCTAATTGCCGGCGGGGTTGGAAATTGTACTTCTGAAACCCA
AAAATAAGGTAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCGCCTAAATGGAATAGCTTT
TTAAAGAGCTTAAAAGTTTGAAAAAAGTAAAAGACGAAAAGCTTAACAGT
GTAACACGTGATTTGCGAATGTGCAAAATTGTTAAAAAGCAACGTGCTTT
TATGATATTATTTTTGTCATCCCTAAAATATTAAAGGTTTTCAGAAAGTT
ATCATTTTTTAAAACTGACATTACAATCATGGACAAAAGGTTTGTAGACT
TTTGCAATATTTGCAAAATACTTCAATATCGATCAAAGACAAGTTCCCAA
GAGGTTCTGTGTGCTTTCCAAACCCATCCAAAGTCTTTCAAAGTCACCAA
TTGCAGTCTAACCACATGGGCTTGATAAACTGGCTTACACCAGTATCAAA
ACGCTGATTTTTTGCTTGTGGTTCCCTCAAAAGCAATTCAAAAGCAATGC
AACGACTTCAAAAGTGTTTTTCTTAACTTCCCTCCCTTTTCAGACACATT
GAAGAGTCATTTTGCTCTATTTGTCATCATTTGTCTACAACCTTTTGTCC
ATGATTGTAGGGATATAGATGAAAATAGCCCAAATTTGTTCTGAAGGGAT
GAAAAAACCGTTTCAGTTAAGGACACATTCAAGTTATAGGGTTTGAGTTT
GAAGACGGTCACTTAATCATATCATGTTTAACTTATATTAATGAATGTTT
CTTGTTTGTACAATAAAAAATTGTTGCTAGAAAGTTTCAATAAATTGGGC
TCTTCCAGAAAAAATCCGTTCATGGGGGGTGGAGGATGAATTGTCCAGGG
GTGGGGTTATACCCCTGGACAAACATCAAATCAACCCCGTGGACACAAAA
AATTACCCCTGGACATTGGAATTTACCCCCTGGACATTGCAATTTTTTGG
TATTTTTTCAATACCCCTGGACAAACATCAAATCAACCCCGTGGACACAA
AAAATTACCCCTGGACATTGGAATTTACCCCCTGGACATTGCAATTTTTT
GGTATTTTTTCAATACCCCTGGACAATTCAAATTCAAAAAATAATATATC
ATCCACCCCCCATGAACGGATTTTTTCTGGAAGAGCCCATTATTATAGTA
AATCTAATAATACAGTTAAAGTATTCTTAACAAAAGTAAAGACTTTGGAG
GGAATTTAATATGGCTGCGAGCTTTGAAAAATTAAATTTGACGGGAAGTT
ATTTGCCTTAAAATAGATAACATTTGAGGAAGAGAAAACAATAATCTAAA
TTTGGCGGCGGATGGCAGTAAAAGTTACATGTGGATGATTTCGGCCCAAT
CCACCAAATTAAATTTCCGCTAAATTTAATTTTCAAGTTAACCACCAAAT
TAAAAGGACCCTCCCGGCGCTCCAGAAACTTTCGGAGTTTTCAAGAGCAG
CTAAAAAAACACTATTTTCATCTCCGGAAAGTTACTCTTAACACAGCTCC
AGAGTTCCAGTGTAGATCAATTGCCGAAATAGGAGAAAAATGACACTTTT
TACTCCGGACGTTTCTGGAGTGCTGGGAGGGTCCTAAATTGAATTCCCTC
TGAAAAAACTTTTTCGGCCATCCACCAAATTAAATTCCTGCCAAAATTTC
TTCTTTTAATGTAGGTGCAATGTCACGTTGTGTAATCAAAACTGCAGTAA
ATATCTTAATAACTCCATGTTTCAATGGATGCAAGGGGAACAACAATAAT
AATCAAAAGGGCCATTCCAGAGAAAGGATACGTAACGTCACTCTCATTTT
TGACTAAATGCCAGTAGTCCCCTACATAGAGACTGTTGTTCAGCTGGTGG
GCATAGACTCCAATAATTTCAGTTGACAACTGGACAATATCTTGAAATGG
CCCAAAAATTGTGCCCGAAATAAAAGAAATGGTAAACTGGCTGCCAAACA
GCCGACAGTTGTGTACATGTTTGTTCAAGAAATTTCAAGTCAATACTTTC
AATGGTTACACTTGTCTTGGAACGGTGAATCGTCAATCAAATCTTGCTTT
AGCGTTTAGGTGATAAATGTTCTTTTCCTGCTTCACTTTAAATCTGCTAA
TTGTAGCTAAGGTACATTGGTAAGGTTGCCATATATGCAGTGATTGATCT
TGGATGGGACATGCTATCAACTGTTATCATAGATTTCGAGTAATTGAAAC
AATAATAAACTTCTTGTTATCTAGTCTATCTTATTTTTCTTGTCAACACA
AACACATCCATCTTCCAAGTCCAAGCAAAACCAAATGTTTTAACATCTCA
AAAGTGATTCTAGTGAAAGGAGGTTTGTTTTCAACAACATCACGAGTGTG
GTAGTTTGAATGGAATAATATCAATGAAGAACCATAAATTTCAATTTCAA
TTTTGAAGAATCCTTATTGTAGTTGTAGATTTAAAATCTACATCAAGAAT
TATCTTGCTGTTTGCACTTGCAGTAGAAACTTTTGACAAACTTTCACGAG
ACTTTTAATTATCTCCGTTATTTAGATTTCATAAAACAAGTGCGCTAACT
ACTACGGAGCTAATTAGAATCTATACACCGCAAATACTGTCCGATAAGTT
TGCGTGGCGTAATATAACAGAGATAAAACGGCTTATGCAAGAATTTACGC
GGGAAATAATTTCCCGATTCACCGAACATTTAATNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGCCTTCTCTTTA
ACAGCTGAAAATATTCTTAGAGATTAATAAACGGGGGGGGGGTCCTAATA
AGGTCCGGGGGGTTGGAAAATTTTCGAAAAATTAACAAGCGGGGGGGCCC
GTTTATTTGGAACCTAAGAGTAAACACAAATGTATTATTTGAATGATGAA
TTTTCTAAGCTTCGAACTATGCTTATCATTATTTGTATTTTTTTGCAAAT
TTGAGCCTCAGTTTGCTTAAACGTTATGCTTTCTAATAAAAGAGTGTATT
TGAATCACAAAAAATTGTAGAATTTGATTAATGATTACACAGTATCGAAT
AATCCTGTCGGGGGGGATTATTGTGATAATATTGTTAATACATTGAAACA
GCAGAGAGTGACAGTTCCCCATAATATTTTATGTGTGTCTTGTTATCGCT
TCAAATTTGAATTTTAGCTTTTGTTTGTGTTTCAGTGACGATTCTGATGG
TGAATCGGCAGCAATGCCTTCAGGTACCTTTTTACAGTTTTCTATAAAGT
TTAATGTTGACGCTCTCTAATTCCACGTTCTACTATTCAATACGCTCTAG
TATTTGATAATATTGAAAGTCACGGTCAACAAGAAACTCTCATAAGCGAT
GCTCTACTATTGGATACGCTCTTTTATAAGTTTTGTTCAATAAAGCTCTT
TTTTTGTCTTGGCGGAACAAAAGATTTTTCTCAAGCAAATTCTCGTCAAT
ATGTTTTGTATTTTTTGATTCCAAACCAATATAACCTCTTTTCTGAATGT
TGAATGGAAGCAATCATCTAAGAACTGGAAAGCAGTCAAGCTAATTTTAA
ACGAATTCATTGACCGGTTTAATCTATTTATTCCTCCAATTTTTGCTTTC
TCAGGTTTTCAAAATGTGAACGCTGAATCGGTAGTGAGAAAACAGCAAGA
GCAACGTGACAAGGCGAAAAAAGCCAGCGACGAGAAGAAAGTGCGTGATA
AATTAAACCGTGATGTGCAAAAACAGAAGAAAGACGATCGGAAAGAGAAA
GAAAAACAACGAACGCAAAAAGGGGAACGTCGCAAGTGATGAATAAGAAA
GAGCTGATTTTAAAGGAGAGACTTTTTGAGAAAATAGTCGGGATGAAGGA
GAAAGCTAAGAGACGCTTCAGTTTCAGTAATTGATTATTGCCACGAGAAC
TGCATACAAGTGGAAAACTCTTCCAAAGTTTGTCTGGTATGTACCTCGCA
CACTTGTAATTTTTAATGGTCTCCTGAGATTTTGTTGGCTTCTGATCGAT
CCAAGGTGAATAACCTTTAACATTTTGATATGAAACATTCTGGTACAAAG
TTTGCATAAAATTGGTATGATTATATTTGTTGTATCGAAACTACTGATTT
TGCGGTATAAACTTTAGTTTTGCAAGTTGATATTGTAAGGTGAACTTATA
AGAAGCTTTTAGCTTAAAAATTAGCATACGACTTTTCTCTTATGTGTGGT
GCTACTGAAATGCACAGGTGTGTCTCCTTATGATCGACATTAATAATATT
CATACTGTTCAACAAAAAGTCAAACGTCTTAGGAAGATATTTTCGAGCAA
TATTATACTCTTTCAATAAAAGACACTTAGAAATTTAAAAAAT Coding sequence (CDS) from alignment at scaffold_88:366477..372069- >TCONS_00073226 ID=TCONS_00073226|Name=TCONS_00073226|organism=Clytia hemisphaerica|type=CDS|length=1044bp|location=Sequence derived from alignment at scaffold_88:366477..372069- (Clytia hemisphaerica)
GTTTTCAAAATGTGAACGCTGAATCGGTAGTGAGAAAACAGCAAGAGCAA
CGTGACAAGGCGAAAAAAGCCAGCGACGAGAAGAAAGTGCGTGATAAATT
AAACCGTGATGTGCAAAAACAGAAGAAAGACGATCGGAAAGAGAAAGAAA
AACAACGAACGCAAAAAGGGGAACGTCGCAAGTGATGACGATTCTGATGG
TGAATCGGCAGCAATGCCTTCAGATGAAACAGCAGGAACAAGTTTCCACA
GATTCTGATAAAAACGCCAAAGCAGGACGACTGGTTGACAATGAAATGAA
AAAATTAGTTTTGAACCAATACAACAATAGAGGCGCTAGTGATGGAAGGT
TTTCAAAATGTGAACGCTGAATCGGTAGTGAGAAAACAGCAAGAGCAACG
TGACAAGGCGAAAAAAGCCAGCGACGAGAAGAAAGTGCGTGATAAATTAA
ACCGTGATGTGCAAAAACAGAAGAAAGACGATCGGAAAGAGAAAGAAAAA
CAACGAACGCAAAAAGGGGAACGTCGCAAGTGATGACGATTCTGATGGTG
AATCGGCAGCAATGCCTTCAGATGAAACAGCAGGAACAAGTTTCCACAGA
TTCTGATAAAAACGCCAAAGCAGGACGACTGGTTGACAATGAAATGAAAA
AATTAGTTTTGAACCAATACAACAATAGAGGCGCTAGTGATGGAAGGTTT
TCAAAATGTGAACGCTGAATCGGTAGTGAGAAAACAGCAAGAGCAACGTG
ACAAGGCGAAAAAAGCCAGCGACGAGAAGAAAGTGCGTGATAAATTAAAC
CGTGATGTGCAAAAACAGAAGAAAGACGATCGGAAAGAGAAAGAAAAACA
ACGAACGCAAAAAGGGGAACGTCGCAAGTGATGACGATTCTGATGGTGAA
TCGGCAGCAATGCCTTCAGATGAAACAGCAGGAACAAGTTTCCACAGATT
CTGATAAAAACGCCAAAGCAGGACGACTGGTTGACAATGAAATGAAAAAA
TTAGTTTTGAACCAATACAACAATAGAGGCGCTAGTGATGGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00073226-exon-scaffold_88-1575043694:371724..372069 | TCONS_00073226-exon-scaffold_88-1575043694:371724..372069 | Clytia hemisphaerica | exon |
| TCONS_00073226-exon-scaffold_88-1575043694:367597..367634 | TCONS_00073226-exon-scaffold_88-1575043694:367597..367634 | Clytia hemisphaerica | exon |
| TCONS_00073226-exon-scaffold_88-1575043694:366477..367215 | TCONS_00073226-exon-scaffold_88-1575043694:366477..367215 | Clytia hemisphaerica | exon |
| TCONS_00073226-exon-scaffold_88-1510915933:371724..372069 | TCONS_00073226-exon-scaffold_88-1510915933:371724..372069 | Clytia hemisphaerica | exon |
| TCONS_00073226-exon-scaffold_88-1510915933:367597..367634 | TCONS_00073226-exon-scaffold_88-1510915933:367597..367634 | Clytia hemisphaerica | exon |
| TCONS_00073226-exon-scaffold_88-1510915933:366477..367215 | TCONS_00073226-exon-scaffold_88-1510915933:366477..367215 | Clytia hemisphaerica | exon |
| TCONS_00073226-exon-scaffold_88-1491911889:371724..372069 | TCONS_00073226-exon-scaffold_88-1491911889:371724..372069 | Clytia hemisphaerica | exon |
| TCONS_00073226-exon-scaffold_88-1491911889:367597..367634 | TCONS_00073226-exon-scaffold_88-1491911889:367597..367634 | Clytia hemisphaerica | exon |
| TCONS_00073226-exon-scaffold_88-1491911889:366477..367215 | TCONS_00073226-exon-scaffold_88-1491911889:366477..367215 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_88 | supercontig | scaffold_88:366477..372069 - |
Blast
The following BLAST results are available for this feature:
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