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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073221 ID=TCONS_00073221|Name=TCONS_00073221|organism=Clytia hemisphaerica|type=transcript|length=3061bp
caaataaatttcagaatttttggcgttttcactgtgataacatgtgagcg
aAATTCTATTTTTGAGATGCGAGCGACCGTCTATCCCATggcatctcaaa
agtaaagttgaaaccaagctttcttcctccaacttaaattttatcgataa
aacgaattttaaatctacacatgcgtaattttgcttacttagggatattt
cgataggaagctctgcggggcattctttgcgacagctacttgctagtata
tgtcaatgatgaccttcatttttaaggaaatatttagtcgcatttttgcg
AATCTTGTTTATTTAAAGAAGTCAATATTAAAACATTCTAATGTACGGGT
ATGTCGTGGACGCAGtgagaaatacaaaaaaaacaataacaaaagaaatt
attacgAACGGTCGAGACGTTGTCTTCTTTTAATTTGGCTCGACTATCGG
TGAATTTTTCCGGCTAAGATAAGAAAATTCATAATTCACCAGTCTCAATC
AATGCTTCATTCGCCGTGCCAATGCACCTTTTTATCTTaattactctaag
gtcccgaaaaGACGGGGATGTATTTCTTAATCGATTCTCTCCTAGATGTA
AACCCACCTAAGGTTTCTAAGCCTCAGGTTCCTTGAAGATTCCAATTTGT
TGTAAAAATTCTTCATGATTCTCTTGGGAATCTGAATAtctaaaaaattg
aacaggTGTGATAGTCGTGCACGTTGTCGTACTCTCGATAACATCTGTAT
CATGAAAAAGCGCTGCGATTGGTGTATTCgttctattgtttaaaacaCGT
GATAATGACTCACTGGATCCATCTGATGATGACAAATAATTAAAGCGACC
ACGTGGTAACGATTCACTAGATCCAAGTGTGGAAGTCGAAGAATAATACG
CTCCAAAAGGTGTACTGTGATGACGTGGTCTGTATAATGACTCACTTGAG
CCAACGTCCGTTGAATTTTGTGAACTTTGTAAATTATATGGGACGCTATA
AGCTCTAGACATAAGTTCATCGTTTCTTTCGGTACCCGGTAAAGTTGTGT
CATCCCCGCCATACGATAATGTTGACTCGTAGGGCGGTGGATGTGGAGGC
GATTGTATGTTGGTAGAGTTAAACGAATATCCACTATGCTCTTGTTCTGT
AAATTCTTGATAAGGCGGTGGAGGTGGTTCGATATTTTTGACTGGGCGCG
CTTGAGATTTCTTCAAAACATGATCAATCGCTATGATTGAAATGATCACT
AAAATAGAAAGTCCTATGGCAGACAGCCACAACACGACATAGCTCTTGAT
TCCATTACGCTTATCAAGTTGTTGTGGGCTTTCTGCTTCAAACTGTTCTT
GACGAGGAGTCGGACCAAAGCTACGACGTACTCCGCTTGTAGGACAGTCT
TTTTCATCATTACCGGCCTCACAATCTGCAACACCGTTACATCGTTTGGT
ACAGTCTATATACGTCTCATCATAACACATAAAAAACTCTTTATCTGCTA
TACTAAAACATTCACCATTTGTTGTAGGTAATACGGCTTCATAAAATGCT
CTGAAATGTAGATAGGGCCTAACACTATCGTTTGAGTCAGCAATCCAGTT
GATAACACCTTGGTTGCTTGGAATTAGTAAGGCTTCTGGTGGAACCGAAT
CTTCCCCGTACGAATCCCATAttattgaattttctttttgagatgTAACT
TGCACATGCTCTTCGAGCAAGCCAGCAGTATGATGTCTTTGGTTCCAGTC
TTTAATATGCAACAATATGATTTTACTTTCTGGAACATTAATTCTCCATT
GGCAAGAATATTTCTCATTATGCCAGTATGTTGGTGTTTCGAAGTTCCCT
GAATAACCTTCAAGATCTCCACCGCAGCTATCGACCATACGATAGAACAT
TTTAATATTAGGTAATTGGTTATGTTCTCCTTCGTAGAGATTCGGTCGTA
CTCTATAAACAATCGACATTGTATTTCTAACAGACCTTAGCTTACTAAAA
GGTGGATTTTCTTCACAGAAATCTCCTAGAGAGTAACCCCCATCAAAATC
ACCATCACGTACGTAAATATTGTTGTAAATACAGGAGCCTGGTGCGAGGT
CAAAGTCCAAGAATTCTAAAGTGATCACATGATCATCATCAGCCTCGATA
GTCCATAAACATTCGTGAGGTCTTTTGGTTTCGtgtatataaaatggaat
gtttATGTATCCGTGTGATCGAGTCAAAACACCCCCACATCCTTCTCGCT
CGAACATGGCGTAAAACAACCGTTGTTTTGAACCATGCCTTCCAGTCATA
TTGATCAAATCGGATATGTCTGACGAAGAAGTTCTTAATGTTATGTCCAA
CGCATCTGAAGTCAAAAATATAAGATCGTTTGGTGGTTTTTGGGATGTGT
ACAGTTGAGTCTCTTCATTTTTATAGTTGTAAATTTCTAACTCATCACCA
GGCCCAAAGAAAAACTGTCGAATCATCAAGACAATGCGGGAACCATCTTG
CATTTCAATCCGCCATTTTGTAGTTGTGTTGCCAGGAAATGGAACAGGAT
ATCCTGGGCTTGTTAAAACTCCGAAACTTTGATTCACAAATTTATAGTTA
TGTCCTTTTCCATTTGTTCGAATATTAGCCCTTTGGTAAATTTCGTGAGt
attttttatatcaaaataactttgtattttaaatgAATCTGGGGCTAAAG
TAACTGAATATGCGATATCCAGACATGCAAATAAAGCTAATATGGTGAAA
GTTGAATGCATTTTTGATCTGCTGagagagttttcaaaaattcaaaaagc
aaTCCATTATGGGTGGTCCAAACTGACAACTTCTCAatgttaataatgtt
tttgggaATAAATTAGCGTCTTTAACAGTCGGGTTAACAGTATAAGtaaa
aaacttgaaaacaaCCTAAACCAGTAGTTTTCAGTCTTTGAGAATCCACA
AACAAATTCAAAACGAATCCATTTTCCGTTGCCatactaatccattgcaa
agctGTTATTTTCCTGCTTGAGCTCAGctcttttttctgcaaaaaaaatt
attcaattttt Run BLAST on NCBI transcript from alignment at scaffold_88:314164..317306- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00073221 ID=TCONS_00073221|Name=TCONS_00073221|organism=Clytia hemisphaerica|type=transcript|length=3143bp|location=Sequence derived from alignment at scaffold_88:314164..317306- (Clytia hemisphaerica)
CAAATAAATTTCAGAATTTTTGGCGTTTTCACTGTGATAACATGTGAGCG
AAATTCTATTTTTGAGATGCGAGCGACCGTCTATCCCATGGCATCTCAAA
AGTAAAGTTGAAACCAAGCTTTCTTCCTCCAACTTAAATTTTATCGATAA
AACGAATTTTAAATCTACACATGCGTAATTTTGCTTACTTAGGGATATTT
CGATAGGAAGCTCTGCGGGGCATTCTTTGCGACAGCTACTTGCTAGTATA
TGTCAATGATGACCTTCATTTTTAAGGAAATATTTAGTCGCATTTTTGCG
AATCTTGTTTATTTAAAGAAGTCAATATTAAAACATTCTAATGTACGGGT
ATGTCGTGGACGCAGTGAGAAATACAAAAAAAACAATAACAAAAGAAATT
ATTACGAACGGTCGAGACGTTGTCTTCTTTTAATTTGGCTCGACTATCGG
TGAATTTTTCCGGCTAAGATAAGAAAATTCATAATTCACCAGTCTCAATC
AATGCTTCATTCGCCGTGCCAATGCACCTTTTTATCTTAATTACTCTAAG
GTCCCGAAAAGACGGGGATGTATTTCTTAATCGATTCTCTCCTAGATGTA
AACCCACCTAAGGTTTCTAAGCCTCAGGTTCCTTGAAGATTCCAATTTGT
TGTAAAAATTCTTCATGATTCTCTTGGGAATCTGAATATCTAAAAAATTG
AACAGGTGTGATAGTCGTGCACGTTGTCGTACTCTCGATAACATCTGTAT
CATGAAAAAGCGCTGCGATTGGTGTATTCGTTCTATTGTTTAAAACACGT
GATAATGACTCACTGGATCCATCTGATGATGACAAATAATTAAAGCGACC
ACGTGGTAACGATTCACTAGATCCAAGTGTGGAAGTCGAAGAATAATACG
CTCCAAAAGGTGTACTGTGATGACGTGGTCTGTATAATGACTCACTTGAG
CCAACGTCCGTTGAATTTTGTGAACTTTGTAAATTATATGGGACGCTATA
AGCTCTAGACATAAGTTCATCGTTTCTTTCGGTACCCGGTAAAGTNGTTT
TGTGAATTTTGTAAATTAAATGGGACGCTATAAGCTCTAGACATAAGTTC
ATCGTTTCTTTCGGTACCCGGTAAAGTTGTGTCATCCCCGCCATACGATA
ATGTTGACTCGTAGGGCGGTGGATGTGGAGGCGATTGTATGTTGGTAGAG
TTAAACGAATATCCACTATGCTCTTGTTCTGTAAATTCTTGATAAGGCGG
TGGAGGTGGTTCGATATTTTTGACTGGGCGCGCTTGAGATTTCTTCAAAA
CATGATCAATCGCTATGATTGAAATGATCACTAAAATAGAAAGTCCTATG
GCAGACAGCCACAACACGACATAGCTCTTGATTCCATTACGCTTATCAAG
TTGTTGTGGGCTTTCTGCTTCAAACTGTTCTTGACGAGGAGTCGGACCAA
AGCTACGACGTACTCCGCTTGTAGGACAGTCTTTTTCATCATTACCGGCC
TCACAATCTGCAACACCGTTACATCGTTTGGTACAGTCTATATACGTCTC
ATCATAACACATAAAAAACTCTTTATCTGCTATACTAAAACATTCACCAT
TTGTTGTAGGTAATACGGCTTCATAAAATGCTCTGAAATGTAGATAGGGC
CTAACACTATCGTTTGAGTCAGCAATCCAGTTGATAACACCTTGGTTGCT
TGGAATTAGTAAGGCTTCTGGTGGAACCGAATCTTCCCCGTACGAATCCC
ATATTATTGAATTTTCTTTTTGAGATGTAACTTGCACATGCTCTTCGAGC
AAGCCAGCAGTATGATGTCTTTGGTTCCAGTCTTTAATATGCAACAATAT
GATTTTACTTTCTGGAACATTAATTCTCCATTGGCAAGAATATTTCTCAT
TATGCCAGTATGTTGGTGTTTCGAAGTTCCCTGAATAACCTTCAAGATCT
CCACCGCAGCTATCGACCATACGATAGAACATTTTAATATTAGGTAATTG
GTTATGTTCTCCTTCGTAGAGATTCGGTCGTACTCTATAAACAATCGACA
TTGTATTTCTAACAGACCTTAGCTTACTAAAAGGTGGATTTTCTTCACAG
AAATCTCCTAGAGAGTAACCCCCATCAAAATCACCATCACGTACGTAAAT
ATTGTTGTAAATACAGGAGCCTGGTGCGAGGTCAAAGTCCAAGAATTCTA
AAGTGATCACATGATCATCATCAGCCTCGATAGTCCATAAACATTCGTGA
GGTCTTTTGGTTTCGTGTATATAAAATGGAATGTTTATGTATCCGTGTGA
TCGAGTCAAAACACCCCCACATCCTTCTCGCTCGAACATGGCGTAAAACA
ACCGTTGTTTTGAACCATGCCTTCCAGTCATATTGATCAAATCGGATATG
TCTGACGAAGAAGTTCTTAATGTTATGTCCAACGCATCTGAAGTCAAAAA
TATAAGATCGTTTGGTGGTTTTTGGGATGTGTACAGTTGAGTCTCTTCAT
TTTTATAGTTGTAAATTTCTAACTCATCACCAGGCCCAAAGAAAAACTGT
CGAATCATCAAGACAATGCGGGAACCATCTTGCATTTCAATCCGCCATTT
TGTAGTTGTGTTGCCAGGAAATGGAACAGGATATCCTGGGCTTGTTAAAA
CTCCGAAACTTTGATTCACAAATTTATAGTTATGTCCTTTTCCATTTGTT
CGAATATTAGCCCTTTGGTAAATTTCGTGAGTATTTTTTATATCAAAATA
ACTTTGTATTTTAAATGAATCTGGGGCTAAAGTAACTGAATATGCGATAT
CCAGACATGCAAATAAAGCTAATATGGTGAAAGTTGAATGCATTTTTGAT
CTGCTGAGAGAGTTTTCAAAAATTCAAAAAGCAATCCATTATGGGTGGTC
CAAACTGACAACTTCTCAATGTTAATAATGTTTTTGGGAATAAATTAGCG
TCTTTAACAGTCGGGTTAACAGTATAAGTAAAAAACTTGAAAACAACCTA
AACCAGTAGTTTTCAGTCTTTGAGAATCCACAAACAAATTCAAAACGAAT
CCATTTTCCGTTGCCATACTAATCCATTGCAAAGCTGTTATTTTCCTGCT
TGAGCTCAGCTCTTTTTTCTGCAAAAAAAATTATTCAATTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00073221-exon-scaffold_88-1575043694:316297..317306 | TCONS_00073221-exon-scaffold_88-1575043694:316297..317306 | Clytia hemisphaerica | exon |
| TCONS_00073221-exon-scaffold_88-1575043694:314164..316214 | TCONS_00073221-exon-scaffold_88-1575043694:314164..316214 | Clytia hemisphaerica | exon |
| TCONS_00073221-exon-scaffold_88-1510915933:316297..317306 | TCONS_00073221-exon-scaffold_88-1510915933:316297..317306 | Clytia hemisphaerica | exon |
| TCONS_00073221-exon-scaffold_88-1510915933:314164..316214 | TCONS_00073221-exon-scaffold_88-1510915933:314164..316214 | Clytia hemisphaerica | exon |
| TCONS_00073221-exon-scaffold_88-1491911889:316297..317306 | TCONS_00073221-exon-scaffold_88-1491911889:316297..317306 | Clytia hemisphaerica | exon |
| TCONS_00073221-exon-scaffold_88-1491911889:314164..316214 | TCONS_00073221-exon-scaffold_88-1491911889:314164..316214 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_88 | supercontig | scaffold_88:314164..317306 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
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