TCONS_00073221 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073221
Unique NameTCONS_00073221
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3061

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073221 ID=TCONS_00073221|Name=TCONS_00073221|organism=Clytia hemisphaerica|type=transcript|length=3061bp
caaataaatttcagaatttttggcgttttcactgtgataacatgtgagcg
aAATTCTATTTTTGAGATGCGAGCGACCGTCTATCCCATggcatctcaaa
agtaaagttgaaaccaagctttcttcctccaacttaaattttatcgataa
aacgaattttaaatctacacatgcgtaattttgcttacttagggatattt
cgataggaagctctgcggggcattctttgcgacagctacttgctagtata
tgtcaatgatgaccttcatttttaaggaaatatttagtcgcatttttgcg
AATCTTGTTTATTTAAAGAAGTCAATATTAAAACATTCTAATGTACGGGT
ATGTCGTGGACGCAGtgagaaatacaaaaaaaacaataacaaaagaaatt
attacgAACGGTCGAGACGTTGTCTTCTTTTAATTTGGCTCGACTATCGG
TGAATTTTTCCGGCTAAGATAAGAAAATTCATAATTCACCAGTCTCAATC
AATGCTTCATTCGCCGTGCCAATGCACCTTTTTATCTTaattactctaag
gtcccgaaaaGACGGGGATGTATTTCTTAATCGATTCTCTCCTAGATGTA
AACCCACCTAAGGTTTCTAAGCCTCAGGTTCCTTGAAGATTCCAATTTGT
TGTAAAAATTCTTCATGATTCTCTTGGGAATCTGAATAtctaaaaaattg
aacaggTGTGATAGTCGTGCACGTTGTCGTACTCTCGATAACATCTGTAT
CATGAAAAAGCGCTGCGATTGGTGTATTCgttctattgtttaaaacaCGT
GATAATGACTCACTGGATCCATCTGATGATGACAAATAATTAAAGCGACC
ACGTGGTAACGATTCACTAGATCCAAGTGTGGAAGTCGAAGAATAATACG
CTCCAAAAGGTGTACTGTGATGACGTGGTCTGTATAATGACTCACTTGAG
CCAACGTCCGTTGAATTTTGTGAACTTTGTAAATTATATGGGACGCTATA
AGCTCTAGACATAAGTTCATCGTTTCTTTCGGTACCCGGTAAAGTTGTGT
CATCCCCGCCATACGATAATGTTGACTCGTAGGGCGGTGGATGTGGAGGC
GATTGTATGTTGGTAGAGTTAAACGAATATCCACTATGCTCTTGTTCTGT
AAATTCTTGATAAGGCGGTGGAGGTGGTTCGATATTTTTGACTGGGCGCG
CTTGAGATTTCTTCAAAACATGATCAATCGCTATGATTGAAATGATCACT
AAAATAGAAAGTCCTATGGCAGACAGCCACAACACGACATAGCTCTTGAT
TCCATTACGCTTATCAAGTTGTTGTGGGCTTTCTGCTTCAAACTGTTCTT
GACGAGGAGTCGGACCAAAGCTACGACGTACTCCGCTTGTAGGACAGTCT
TTTTCATCATTACCGGCCTCACAATCTGCAACACCGTTACATCGTTTGGT
ACAGTCTATATACGTCTCATCATAACACATAAAAAACTCTTTATCTGCTA
TACTAAAACATTCACCATTTGTTGTAGGTAATACGGCTTCATAAAATGCT
CTGAAATGTAGATAGGGCCTAACACTATCGTTTGAGTCAGCAATCCAGTT
GATAACACCTTGGTTGCTTGGAATTAGTAAGGCTTCTGGTGGAACCGAAT
CTTCCCCGTACGAATCCCATAttattgaattttctttttgagatgTAACT
TGCACATGCTCTTCGAGCAAGCCAGCAGTATGATGTCTTTGGTTCCAGTC
TTTAATATGCAACAATATGATTTTACTTTCTGGAACATTAATTCTCCATT
GGCAAGAATATTTCTCATTATGCCAGTATGTTGGTGTTTCGAAGTTCCCT
GAATAACCTTCAAGATCTCCACCGCAGCTATCGACCATACGATAGAACAT
TTTAATATTAGGTAATTGGTTATGTTCTCCTTCGTAGAGATTCGGTCGTA
CTCTATAAACAATCGACATTGTATTTCTAACAGACCTTAGCTTACTAAAA
GGTGGATTTTCTTCACAGAAATCTCCTAGAGAGTAACCCCCATCAAAATC
ACCATCACGTACGTAAATATTGTTGTAAATACAGGAGCCTGGTGCGAGGT
CAAAGTCCAAGAATTCTAAAGTGATCACATGATCATCATCAGCCTCGATA
GTCCATAAACATTCGTGAGGTCTTTTGGTTTCGtgtatataaaatggaat
gtttATGTATCCGTGTGATCGAGTCAAAACACCCCCACATCCTTCTCGCT
CGAACATGGCGTAAAACAACCGTTGTTTTGAACCATGCCTTCCAGTCATA
TTGATCAAATCGGATATGTCTGACGAAGAAGTTCTTAATGTTATGTCCAA
CGCATCTGAAGTCAAAAATATAAGATCGTTTGGTGGTTTTTGGGATGTGT
ACAGTTGAGTCTCTTCATTTTTATAGTTGTAAATTTCTAACTCATCACCA
GGCCCAAAGAAAAACTGTCGAATCATCAAGACAATGCGGGAACCATCTTG
CATTTCAATCCGCCATTTTGTAGTTGTGTTGCCAGGAAATGGAACAGGAT
ATCCTGGGCTTGTTAAAACTCCGAAACTTTGATTCACAAATTTATAGTTA
TGTCCTTTTCCATTTGTTCGAATATTAGCCCTTTGGTAAATTTCGTGAGt
attttttatatcaaaataactttgtattttaaatgAATCTGGGGCTAAAG
TAACTGAATATGCGATATCCAGACATGCAAATAAAGCTAATATGGTGAAA
GTTGAATGCATTTTTGATCTGCTGagagagttttcaaaaattcaaaaagc
aaTCCATTATGGGTGGTCCAAACTGACAACTTCTCAatgttaataatgtt
tttgggaATAAATTAGCGTCTTTAACAGTCGGGTTAACAGTATAAGtaaa
aaacttgaaaacaaCCTAAACCAGTAGTTTTCAGTCTTTGAGAATCCACA
AACAAATTCAAAACGAATCCATTTTCCGTTGCCatactaatccattgcaa
agctGTTATTTTCCTGCTTGAGCTCAGctcttttttctgcaaaaaaaatt
attcaattttt
Run BLAST on NCBI

transcript from alignment at scaffold_88:314164..317306-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073221 ID=TCONS_00073221|Name=TCONS_00073221|organism=Clytia hemisphaerica|type=transcript|length=3143bp|location=Sequence derived from alignment at scaffold_88:314164..317306- (Clytia hemisphaerica)
CAAATAAATTTCAGAATTTTTGGCGTTTTCACTGTGATAACATGTGAGCG AAATTCTATTTTTGAGATGCGAGCGACCGTCTATCCCATGGCATCTCAAA AGTAAAGTTGAAACCAAGCTTTCTTCCTCCAACTTAAATTTTATCGATAA AACGAATTTTAAATCTACACATGCGTAATTTTGCTTACTTAGGGATATTT CGATAGGAAGCTCTGCGGGGCATTCTTTGCGACAGCTACTTGCTAGTATA TGTCAATGATGACCTTCATTTTTAAGGAAATATTTAGTCGCATTTTTGCG AATCTTGTTTATTTAAAGAAGTCAATATTAAAACATTCTAATGTACGGGT ATGTCGTGGACGCAGTGAGAAATACAAAAAAAACAATAACAAAAGAAATT ATTACGAACGGTCGAGACGTTGTCTTCTTTTAATTTGGCTCGACTATCGG TGAATTTTTCCGGCTAAGATAAGAAAATTCATAATTCACCAGTCTCAATC AATGCTTCATTCGCCGTGCCAATGCACCTTTTTATCTTAATTACTCTAAG GTCCCGAAAAGACGGGGATGTATTTCTTAATCGATTCTCTCCTAGATGTA AACCCACCTAAGGTTTCTAAGCCTCAGGTTCCTTGAAGATTCCAATTTGT TGTAAAAATTCTTCATGATTCTCTTGGGAATCTGAATATCTAAAAAATTG AACAGGTGTGATAGTCGTGCACGTTGTCGTACTCTCGATAACATCTGTAT CATGAAAAAGCGCTGCGATTGGTGTATTCGTTCTATTGTTTAAAACACGT GATAATGACTCACTGGATCCATCTGATGATGACAAATAATTAAAGCGACC ACGTGGTAACGATTCACTAGATCCAAGTGTGGAAGTCGAAGAATAATACG CTCCAAAAGGTGTACTGTGATGACGTGGTCTGTATAATGACTCACTTGAG CCAACGTCCGTTGAATTTTGTGAACTTTGTAAATTATATGGGACGCTATA AGCTCTAGACATAAGTTCATCGTTTCTTTCGGTACCCGGTAAAGTNGTTT TGTGAATTTTGTAAATTAAATGGGACGCTATAAGCTCTAGACATAAGTTC ATCGTTTCTTTCGGTACCCGGTAAAGTTGTGTCATCCCCGCCATACGATA ATGTTGACTCGTAGGGCGGTGGATGTGGAGGCGATTGTATGTTGGTAGAG TTAAACGAATATCCACTATGCTCTTGTTCTGTAAATTCTTGATAAGGCGG TGGAGGTGGTTCGATATTTTTGACTGGGCGCGCTTGAGATTTCTTCAAAA CATGATCAATCGCTATGATTGAAATGATCACTAAAATAGAAAGTCCTATG GCAGACAGCCACAACACGACATAGCTCTTGATTCCATTACGCTTATCAAG TTGTTGTGGGCTTTCTGCTTCAAACTGTTCTTGACGAGGAGTCGGACCAA AGCTACGACGTACTCCGCTTGTAGGACAGTCTTTTTCATCATTACCGGCC TCACAATCTGCAACACCGTTACATCGTTTGGTACAGTCTATATACGTCTC ATCATAACACATAAAAAACTCTTTATCTGCTATACTAAAACATTCACCAT TTGTTGTAGGTAATACGGCTTCATAAAATGCTCTGAAATGTAGATAGGGC CTAACACTATCGTTTGAGTCAGCAATCCAGTTGATAACACCTTGGTTGCT TGGAATTAGTAAGGCTTCTGGTGGAACCGAATCTTCCCCGTACGAATCCC ATATTATTGAATTTTCTTTTTGAGATGTAACTTGCACATGCTCTTCGAGC AAGCCAGCAGTATGATGTCTTTGGTTCCAGTCTTTAATATGCAACAATAT GATTTTACTTTCTGGAACATTAATTCTCCATTGGCAAGAATATTTCTCAT TATGCCAGTATGTTGGTGTTTCGAAGTTCCCTGAATAACCTTCAAGATCT CCACCGCAGCTATCGACCATACGATAGAACATTTTAATATTAGGTAATTG GTTATGTTCTCCTTCGTAGAGATTCGGTCGTACTCTATAAACAATCGACA TTGTATTTCTAACAGACCTTAGCTTACTAAAAGGTGGATTTTCTTCACAG AAATCTCCTAGAGAGTAACCCCCATCAAAATCACCATCACGTACGTAAAT ATTGTTGTAAATACAGGAGCCTGGTGCGAGGTCAAAGTCCAAGAATTCTA AAGTGATCACATGATCATCATCAGCCTCGATAGTCCATAAACATTCGTGA GGTCTTTTGGTTTCGTGTATATAAAATGGAATGTTTATGTATCCGTGTGA TCGAGTCAAAACACCCCCACATCCTTCTCGCTCGAACATGGCGTAAAACA ACCGTTGTTTTGAACCATGCCTTCCAGTCATATTGATCAAATCGGATATG TCTGACGAAGAAGTTCTTAATGTTATGTCCAACGCATCTGAAGTCAAAAA TATAAGATCGTTTGGTGGTTTTTGGGATGTGTACAGTTGAGTCTCTTCAT TTTTATAGTTGTAAATTTCTAACTCATCACCAGGCCCAAAGAAAAACTGT CGAATCATCAAGACAATGCGGGAACCATCTTGCATTTCAATCCGCCATTT TGTAGTTGTGTTGCCAGGAAATGGAACAGGATATCCTGGGCTTGTTAAAA CTCCGAAACTTTGATTCACAAATTTATAGTTATGTCCTTTTCCATTTGTT CGAATATTAGCCCTTTGGTAAATTTCGTGAGTATTTTTTATATCAAAATA ACTTTGTATTTTAAATGAATCTGGGGCTAAAGTAACTGAATATGCGATAT CCAGACATGCAAATAAAGCTAATATGGTGAAAGTTGAATGCATTTTTGAT CTGCTGAGAGAGTTTTCAAAAATTCAAAAAGCAATCCATTATGGGTGGTC CAAACTGACAACTTCTCAATGTTAATAATGTTTTTGGGAATAAATTAGCG TCTTTAACAGTCGGGTTAACAGTATAAGTAAAAAACTTGAAAACAACCTA AACCAGTAGTTTTCAGTCTTTGAGAATCCACAAACAAATTCAAAACGAAT CCATTTTCCGTTGCCATACTAATCCATTGCAAAGCTGTTATTTTCCTGCT TGAGCTCAGCTCTTTTTTCTGCAAAAAAAATTATTCAATTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045420XLOC_045420Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073221-exon-scaffold_88-1575043694:316297..317306TCONS_00073221-exon-scaffold_88-1575043694:316297..317306Clytia hemisphaericaexon
TCONS_00073221-exon-scaffold_88-1575043694:314164..316214TCONS_00073221-exon-scaffold_88-1575043694:314164..316214Clytia hemisphaericaexon
TCONS_00073221-exon-scaffold_88-1510915933:316297..317306TCONS_00073221-exon-scaffold_88-1510915933:316297..317306Clytia hemisphaericaexon
TCONS_00073221-exon-scaffold_88-1510915933:314164..316214TCONS_00073221-exon-scaffold_88-1510915933:314164..316214Clytia hemisphaericaexon
TCONS_00073221-exon-scaffold_88-1491911889:316297..317306TCONS_00073221-exon-scaffold_88-1491911889:316297..317306Clytia hemisphaericaexon
TCONS_00073221-exon-scaffold_88-1491911889:314164..316214TCONS_00073221-exon-scaffold_88-1491911889:314164..316214Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_88supercontigscaffold_88:314164..317306 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.103651 0.101164 0.117794 0.141788 0.10513 0.175315 2.81867 3.41151 1.14408 1.1052 2.49155 1.74969 6.19279 5.14246 3.25658 8.30224 3.88024 4.33765 0.343892 0.195832 2.324 2.1623 1.35546 1.59496 1.92593 2.39789 0.94771 0.372657 0.0697093 0.140699
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000859CUB_dom
IPR002172LDrepeatLR_classA_rpt
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073221 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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