TCONS_00073209 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073209
Unique NameTCONS_00073209
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1739

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073209 ID=TCONS_00073209|Name=TCONS_00073209|organism=Clytia hemisphaerica|type=transcript|length=1739bp
TGTGTAGCAAAGTCTTTATGTTGACACATTTTTAATTACTATTTGATCAC
ATTTTTTcagagaaattaaaaaagtaaacataCATGAGAATGGATAACAC
GCATAACATACCCGAAGAGGGTGCACTTGAACCAAACGGACCCATATTGG
GATCAAGAGGATACGTTCCTTCCCAAACAATACGTAAAGCGTACCTTGAT
TTGGATGAAACGCCTCAAACTCGGTCAGTTTGCTTACGTTCACTGCGACA
ACTCATAGAAGAATACCAAGAACAAAACAACTTTGACGAGCACACTGATT
CATTNTCTTGATTTGGATGAAACCCCTCAAACTCGGTCAGTTTGCTTACG
TTCACTGCGACAACTCATAGAAGAATACCAAGAACAAAACAACTTTGACG
AGCACACTGAttcatttttattgaaatttctaCGGCACCGAAAATTCGAT
GTTGATGATGCATACAAAATGCTGGAAAATTATTATTCGAACAGAGAAAA
TAAACCGGAAATTTTTCGCAACTTGACgcgtaaaaatgtaaaaaaaacat
tgGAGCAAGGGATTGTGGGAGTTTTACCGCAAAGAGATTCTAAAGGACGG
GCCATCATTATGTTCAAGGTTGAGAAATGGAATATGTCATTAGCTTTCCA
TTTTGAAAAGTTGTTAAGAGTTTGGGTGTATACGCTGGAGAAACTGTTTG
AAATTGATGAAACACAAATTAATGGTGTTGTCATTGTTTGTGATTTGAGT
CAATTGAGCGTCCTACAAAGTAAAAGTTTACGTACTGTCATGCTCACCAA
GACGATCAGCATTTTTCAGaacAATTTCCCCTTTCGAATCAGTGGTATTC
ATTTGTTGAATCCGAGTTGGCACTTCAAACTAGCATGGAAGATGACCAAT
GCTGTTTCTCTTCTCAAACCGAAACTGGTACAACGGATACATATTCATGA
TGGCGACTTGACCGCCTTTTATGAAGACCTTCCACGAAAATATCTCCCTG
AAGAACTGGGTGGGACATGCACGTATGACAACAAATTATGGATTTGCGAA
CTTCTTGAGCCTGAGCAGACGGAACAGGATACGAAATATCAAACGTCCGC
TCACATTCAGTCGCTGAGCACGCGCGCTCAAAATGGTGGCGGTCATCATT
CGAACTCTATGTTTCAAAATAACCCTTATTGAATTCTACCGAAGTGCCCT
GGTGATGTGAGGAGCTGTGGTggttttgagagaaaaagacaTTTGCCAGA
GTTATTGTCATGTCACATTtccaatacacgtttttataagaacaaactac
ataagaaaCTACGGCTTTTagggccaaaatattaagagttAAGGCATGTT
AAGgacagttaagaacatttcaaggctttgtggactctaaacactcgatt
tcttatTATGATAAGCCAATGTTTCTATAAAAAGCATCGAATTGCATTTT
GAATAATATCTCTGGCCTTCAATCtcttttgagaacattttacgAAGCTT
TGGAGCTCCTGATTGAAATGATAAACGGTTTGTGAATCCATTCAACAACA
AATTCTCAATGTTTTTTAgacttttgttctttttgtttttgcagGGCTTC
GGGCATAATTGAATGTCAAATTTGTAGAATAGTTTTCAAGTGTATAgtta
taaattataaataataaagagattatagttttgaaaataaatttttattg
aaagacAAAACTTGTGCTTACTGTTTGTTACGCATGCGC
Run BLAST on NCBI

protein sequence of TCONS_00073209-protein

>TCONS_00073209-protein ID=TCONS_00073209-protein|Name=TCONS_00073209-protein|organism=Clytia hemisphaerica|type=polypeptide|length=237bp
MLENYYSNRENKPEIFRNLTRKNVKKTLEQGIVGVLPQRDSKGRAIIMFK
VEKWNMSLAFHFEKLLRVWVYTLEKLFEIDETQINGVVIVCDLSQLSVLQ
SKSLRTVMLTKTISIFQNNFPFRISGIHLLNPSWHFKLAWKMTNAVSLLK
PKLVQRIHIHDGDLTAFYEDLPRKYLPEELGGTCTYDNKLWICELLEPEQ
TEQDTKYQTSAHIQSLSTRAQNGGGHHSNSMFQNNPY
Run BLAST on NCBI

transcript from alignment at scaffold_88:437651..439712+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073209 ID=TCONS_00073209|Name=TCONS_00073209|organism=Clytia hemisphaerica|type=transcript|length=2062bp|location=Sequence derived from alignment at scaffold_88:437651..439712+ (Clytia hemisphaerica)
TGTGTAGCAAAGTCTTTATGTTGACACATTTTTAATTACTATTTGATCAC
ATTTTTTcagagaaattaaaaaagtaaacataCATGAGAATGGATAACAC
GCATAACATACCCGAAGAGGGTGCACTTGAACCAAACGGACCCATATTGG
GATCAAGAGGATACGTTCCTTCCCAAACAATACGTAAAGCGTACCTTGAT
TTGGATGAAACGCCTCAAACTCGGTCAGTTTGCTTACGTTCACTGCGACA
ACTCATAGAAGAATACCAAGAACAAAACAACTTTGACGAGCACACTGATT
CATTNTCTTGATTTGGATGAAACCCCTCAAACTCGGTCAGTTTGCTTACG
TTCACTGCGACAACTCATAGAAGAATACCAAGAACAAAACAACTTTGACG
AGCACACTGAttcatttttattgaaatttctaCGGCACCGAAAATTCGAT
GTTGATGATGCATACAAAATGCTGGAAAATTATTATTCGAACAGAGAAAA
TAAACCGGAAATTTTTCGCAACTTGACgcgtaaaaatgtaaaaaaaacat
tgGAGCAAGGGATTGTGGGAGTTTTACCGCAAAGAGATTCTAAAGGACGG
GCCATCATTATGTTCAAGGTTGAGAAATGGAATATGTCATTAGCTTTCCA
TTTTGAAAAGTTGTTAAGAGTTTGGGTGTATACGCTGGAGAAACTGTTTG
AAATTGATGAAACACAAATTAATGGTGTTGTCATTGTTTGTGATTTGAGT
CAATTGAGCGTCCTACAAAGTAAAAGTTTACGTACTGTCATGCTCACCAA
GACGATCAGCATTTTTCAGGtgagaaatctttgaaaatttattttcacgc
ttttaagtttttttttactattgTTGGTCAAGTAGTACGAATATATTGCA
TTTTGGTTACTCTGCAATGATCTTTTGTGGCTTTGAATCGCATGACTCAT
CATGATCTTCAAAAAGCAGAACTAAAAGCCTGCAAAGATTGAATTTTAAT
ATTCAACTGATTGCGTCTTCGGTAATCGTTCATTATCGGCGTTGTTTCGG
CGCTGCTCATATGTAACAATTCATAAGGAGATACAAAAAGTCTTTCGTAA
AATATATCTTTGACctatttttctaaatcttttatttttcagaacAATTT
CCCCTTTCGAATCAGTGGTATTCATTTGTTGAATCCGAGTTGGCACTTCA
AACTAGCATGGAAGATGACCAATGCTGTTTCTCTTCTCAAACCGAAACTG
GTACAACGGATACATATTCATGATGGCGACTTGACCGCCTTTTATGAAGA
CCTTCCACGAAAATATCTCCCTGAAGAACTGGGTGGGACATGCACGTATG
ACAACAAATTATGGATTTGCGAACTTCTTGAGCCTGAGCAGACGGAACAG
GATACGAAATATCAAACGTCCGCTCACATTCAGTCGCTGAGCACGCGCGC
TCAAAATGGTGGCGGTCATCATTCGAACTCTATGTTTCAAAATAACCCTT
ATTGAATTCTACCGAAGTGCCCTGGTGATGTGAGGAGCTGTGGTggtttt
gagagaaaaagacaTTTGCCAGAGTTATTGTCATGTCACATTtccaatac
acgtttttataagaacaaactacataagaaaCTACGGCTTTTagggccaa
aatattaagagttAAGGCATGTTAAGgacagttaagaacatttcaaggct
ttgtggactctaaacactcgatttcttatTATGATAAGCCAATGTTTCTA
TAAAAAGCATCGAATTGCATTTTGAATAATATCTCTGGCCTTCAATCtct
tttgagaacattttacgAAGCTTTGGAGCTCCTGATTGAAATGATAAACG
GTTTGTGAATCCATTCAACAACAAATTCTCAATGTTTTTTAgacttttgt
tctttttgtttttgcagGGCTTCGGGCATAATTGAATGTCAAATTTGTAG
AATAGTTTTCAAGTGTATAgttataaattataaataataaagagattata
gttttgaaaataaatttttattgaaagacAAAACTTGTGCTTACTGTTTG
TTACGCATGCGC

Coding sequence (CDS) from alignment at scaffold_88:437651..439712+

>TCONS_00073209 ID=TCONS_00073209|Name=TCONS_00073209|organism=Clytia hemisphaerica|type=CDS|length=1428bp|location=Sequence derived from alignment at scaffold_88:437651..439712+ (Clytia hemisphaerica)
ATGCTGGAAAATTATTATTCGAACAGAGAAAATAAACCGGAAATTTTTCG
CAACTTGACgcgtaaaaatgtaaaaaaaacattgGAGCAAGGGATTGTGG
GAGTTTTACCGCAAAGAGATTCTAAAGGACGGGCCATCATTATGTTCAAG
GTTGAGAAATGGAATATGTCATTAGCTTTCCATTTTGAAAAGTTGTTAAG
AGTTTGGGTGTATACGCTGGAGAAACTGTTTGAAATTGATGAAACACAAA
TTAATGGTGTTGTCATTGTTTGTGATTTGAGTCAATTGAGCGTCCTACAA
AGTAAAAGTTTACGTACTGTCATGCTCACCAAGACGATCAGCATTTTTCA
GaacAATTTCCCCTTTCGAATCAGTGGTATTCATTTGTTGAATCCGAGTT
GGCACTTCAAACTAGCATGGAAGATGACCAATGCTGTTTCTCTTCTCAAA
CCGAAACTGGTACAACGGATACATATTCATGATGGCGACTTGACCGCCTT
TTATGAAGACCTTCCACGAAAATATCTCCCTGAAGAACTGGGTGGGACAT
GCACGTATGACAACAAATTATGGATTTGCGAACTTCTTGAGCCTGAGCAG
ACGGAACAGGATACGAAATATCAAACGTCCGCTCACATTCAGTCGCTGAG
CACGCGCGCTCAAAATGGTGGCGGTCATCATTCGAACTCTATGTTTCAAA
ATAACCCTTATTGAATGCTGGAAAATTATTATTCGAACAGAGAAAATAAA
CCGGAAATTTTTCGCAACTTGACgcgtaaaaatgtaaaaaaaacattgGA
GCAAGGGATTGTGGGAGTTTTACCGCAAAGAGATTCTAAAGGACGGGCCA
TCATTATGTTCAAGGTTGAGAAATGGAATATGTCATTAGCTTTCCATTTT
GAAAAGTTGTTAAGAGTTTGGGTGTATACGCTGGAGAAACTGTTTGAAAT
TGATGAAACACAAATTAATGGTGTTGTCATTGTTTGTGATTTGAGTCAAT
TGAGCGTCCTACAAAGTAAAAGTTTACGTACTGTCATGCTCACCAAGACG
ATCAGCATTTTTCAGaacAATTTCCCCTTTCGAATCAGTGGTATTCATTT
GTTGAATCCGAGTTGGCACTTCAAACTAGCATGGAAGATGACCAATGCTG
TTTCTCTTCTCAAACCGAAACTGGTACAACGGATACATATTCATGATGGC
GACTTGACCGCCTTTTATGAAGACCTTCCACGAAAATATCTCCCTGAAGA
ACTGGGTGGGACATGCACGTATGACAACAAATTATGGATTTGCGAACTTC
TTGAGCCTGAGCAGACGGAACAGGATACGAAATATCAAACGTCCGCTCAC
ATTCAGTCGCTGAGCACGCGCGCTCAAAATGGTGGCGGTCATCATTCGAA
CTCTATGTTTCAAAATAACCCTTATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045412XLOC_045412Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073209-proteinTCONS_00073209-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073209-exon-scaffold_88-1491911889:437651..438469TCONS_00073209-exon-scaffold_88-1491911889:437651..438469Clytia hemisphaericaexon
TCONS_00073209-exon-scaffold_88-1510915933:437651..438469TCONS_00073209-exon-scaffold_88-1510915933:437651..438469Clytia hemisphaericaexon
TCONS_00073209-exon-scaffold_88-1575043694:437651..438469TCONS_00073209-exon-scaffold_88-1575043694:437651..438469Clytia hemisphaericaexon
TCONS_00073209-exon-scaffold_88-1491911889:438793..439712TCONS_00073209-exon-scaffold_88-1491911889:438793..439712Clytia hemisphaericaexon
TCONS_00073209-exon-scaffold_88-1510915933:438793..439712TCONS_00073209-exon-scaffold_88-1510915933:438793..439712Clytia hemisphaericaexon
TCONS_00073209-exon-scaffold_88-1575043694:438793..439712TCONS_00073209-exon-scaffold_88-1575043694:438793..439712Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_88supercontigscaffold_88:437651..439712 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.022612	0.0262547	0.0513723	0.156352	0.247103	18.9604	21.5741	11.8804	20.3068	8.03448	14.8717	6.01445	3.90779	1.00069	0.974981	3.98625	4.96002	8.578	17.643	8.07103	8.92334	2.41942	3.91577	3.46054	3.8439	18.028	9.56909	0.308843	0.235997
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001071CRAL-bd_toc_tran
IPR001251CRAL-TRIO_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005215transporter activity
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
Vocabulary: Biological Process
TermDefinition
GO:0006810transport
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006810 transport
cellular_component GO:0005622 intracellular
molecular_function GO:0005215 transporter activity
Blast
[Close]
BLAST of TCONS_00073209 vs. Swiss-Prot (Human)
Match: RLBP1 (Retinaldehyde-binding protein 1 OS=Homo sapiens GN=RLBP1 PE=1 SV=2)

HSP 1 Score: 162.925 bits (411), Expect = 9.144e-45
Identity = 89/270 (32.96%), Postives = 149/270 (55.19%), Query Frame = 1 
Query:  310 DLDETPQTRSVCLRSLRQLIEEYQEQNN---------FDEHTDSFLLKFLRHRKFDVDDAYKMLENYYSNRENKPEIFRNLTRKNVKKTLEQGIVGVLPQRDSKGRAIIMFKVEKWNMSLAFHFEKLLRVWVYTLEKLFEIDETQINGVVIVCDXXXXXXXXXXXXRTVMLTKTISIFQNNFPFRISGIHLLNPSWHFKLAWKMTNAVSLLKPKLVQRIHIHDGDLTAFYEDLPRKYLPEELGGTCT-YDNKLWICELLEPEQTEQDTKY 1089
            +L+E  +TR   +R L+++++                  E    F L+F+R RKF+V  AY++L  Y + R   PE+F +L+ + V+ T+E G  GVL  RD  GR +++F +E W  S    F+++L+ + + LEKL E +ETQING  I+ +    ++ Q+ SLRT  L K + + Q++FP R   IH ++  W+F   + +      LK KL++R+ +H  DL+ FY+++    LP + GGT   YD K    +L  P+   ++T +
Sbjct:   51 ELNEREETREEAVRELQEMVQAQAASGEELAVAVAERVQEKDSGFFLRFIRARKFNVGRAYELLRGYVNFRLQYPELFDSLSPEAVRCTIEAGYPGVLSSRDKYGRVVMLFNIENWQ-SQEITFDEILQAYCFILEKLLENEETQINGFCIIENFKGFTMQQAASLRTSDLRKMVDMLQDSFPARFKAIHFIHQPWYFTTTYNVVK--PFLKSKLLERVFVHGDDLSGFYQEIDENILPSDFGGTLPKYDGKAVAEQLFGPQAQAENTAF 317
The following BLAST results are available for this feature:
BLAST of TCONS_00073209 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RLBP19.144e-4532.96Retinaldehyde-binding protein 1 OS=Homo sapiens GN... [more]
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