TCONS_00073209-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00073209-protein
Unique NameTCONS_00073209-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length237

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00073209-protein ID=TCONS_00073209-protein|Name=TCONS_00073209-protein|organism=Clytia hemisphaerica|type=polypeptide|length=237bp
MLENYYSNRENKPEIFRNLTRKNVKKTLEQGIVGVLPQRDSKGRAIIMFK
VEKWNMSLAFHFEKLLRVWVYTLEKLFEIDETQINGVVIVCDLSQLSVLQ
SKSLRTVMLTKTISIFQNNFPFRISGIHLLNPSWHFKLAWKMTNAVSLLK
PKLVQRIHIHDGDLTAFYEDLPRKYLPEELGGTCTYDNKLWICELLEPEQ
TEQDTKYQTSAHIQSLSTRAQNGGGHHSNSMFQNNPY
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_045412XLOC_045412Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00073209TCONS_00073209Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001071CRAL-bd_toc_tran
IPR001251CRAL-TRIO_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005215transporter activity
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
Vocabulary: Biological Process
TermDefinition
GO:0006810transport
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006810 transport
cellular_component GO:0005622 intracellular
molecular_function GO:0005215 transporter activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001071Cellular retinaldehyde binding/alpha-tocopherol transportPRINTSPR00180CRETINALDHBPcoord: 107..128
score: 31.82
coord: 174..183
score: 50.0
coord: 30..54
score: 38.0
IPR001251CRAL-TRIO lipid binding domainSMARTSM00516sec14_4coord: 24..185
e-value: 1.0E-20
score: 84.8
IPR001251CRAL-TRIO lipid binding domainGENE3D3.40.525.10coord: 13..210
e-value: 3.6E-43
score: 147.0
IPR001251CRAL-TRIO lipid binding domainPFAMPF00650CRAL_TRIOcoord: 27..183
e-value: 3.1E-31
score: 108.2
IPR001251CRAL-TRIO lipid binding domainPROSITEPS50191CRAL_TRIOcoord: 20..188
score: 15.638
IPR001251CRAL-TRIO lipid binding domainCDDcd00170SEC14coord: 28..183
e-value: 7.14218E-34
score: 119.797
IPR001251CRAL-TRIO lipid binding domainSUPERFAMILY52087CRAL/TRIO domaincoord: 24..188
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 203..237

Blast
[Close]
BLAST of TCONS_00073209-protein vs. Swiss-Prot (Human)
Match: RLBP1 (Retinaldehyde-binding protein 1 OS=Homo sapiens GN=RLBP1 PE=1 SV=2)

HSP 1 Score: 144.821 bits (364), Expect = 5.010e-42
Identity = 72/208 (34.62%), Postives = 119/208 (57.21%), Query Frame = 0 
Query:    1 MLENYYSNRENKPEIFRNLTRKNVKKTLEQGIVGVLPQRDSKGRAIIMFKVEKWNMSLAFHFEKLLRVWVYTLEKLFEIDETQINGVVIVCDLSQLSVLQSKSLRTVMLTKTISIFQNNFPFRISGIHLLNPSWHFKLAWKMTNAVSLLKPKLVQRIHIHDGDLTAFYEDLPRKYLPEELGGTC-TYDNKLWICELLEPEQTEQDTKY 207
            +L  Y + R   PE+F +L+ + V+ T+E G  GVL  RD  GR +++F +E W  S    F+++L+ + + LEKL E +ETQING  I+ +    ++ Q+ SLRT  L K + + Q++FP R   IH ++  W+F   + +      LK KL++R+ +H  DL+ FY+++    LP + GGT   YD K    +L  P+   ++T +
Sbjct:  113 LLRGYVNFRLQYPELFDSLSPEAVRCTIEAGYPGVLSSRDKYGRVVMLFNIENWQ-SQEITFDEILQAYCFILEKLLENEETQINGFCIIENFKGFTMQQAASLRTSDLRKMVDMLQDSFPARFKAIHFIHQPWYFTTTYNVVK--PFLKSKLLERVFVHGDDLSGFYQEIDENILPSDFGGTLPKYDGKAVAEQLFGPQAQAENTAF 317
The following BLAST results are available for this feature:
BLAST of TCONS_00073209-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RLBP15.010e-4234.62Retinaldehyde-binding protein 1 OS=Homo sapiens GN... [more]
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