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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073199 ID=TCONS_00073199|Name=TCONS_00073199|organism=Clytia hemisphaerica|type=transcript|length=2109bp ATGGGACGACAATTCGACCACCATTTCacagaacctccaaagtcatttga tttgagttaatgaacagcatattaaaaaatacatgatttctcttttgcac ccatttattaaaatttcgaaaaatttccaagAGTACCCAGTGGTTTCCAT TATTGTCAAAACGATTCTCTCTGTCAAAGTTTCTGATTCTACTCTTaata attatgtaaataatagcttctttttattaattttagttgaaacaaaattg aaatgatGTAGATTATAAAAAGAGACAGTTTCAATCCAGCTCCCAAAAAT GGCATCTAAAGAGGATTTAGTGAAAAGCATCATCATAAAACAAAACAGTG GAGAGTCATCAAGCAAAAGTGAAACAAATGCAAAATCACAAACCGAGGAA ACAACAACAGTGGAAGTCATTGTCAGCAAAACATCTGCCACTGAAGGGTC AAGTGAAACTGGACAAGAGTATGTGTATTGGGCACGTCGTGGTGAAAATG AATTAGAAACTGCTGGAGAAGTTGAAGTCAGCAGTAGCGGAGTTGAACAG GAAAATGTCAACCCAGAAGAATGTGGCGAATTATTACTGGTACGAGAAAC TGAAGCTAATGGTGCTCAAATTTCTTCTGTTCGTGATCCAAACAGTCTAG TGTACGGTTTGCAAGTCGCTGCTGAACAAATCACTGCTGCTCATGAGATA CAAACGGCTGGAGAGGCTGCCGAAGCCTTTGGTCAAATCACTGAAGAATT TATTGAACAGCAGCAGCGGTTAGAGGCTAAACGAGAGGCTGCTAAACTac aagaaaaactaatgaacgaGGAATACCAAAAAGCCATTGGTTATTTATTA TGTTCGAGTAAATCAAAAAGTgggaaacaaaagaagaaacaaaCAATGAC TGCTTATTTGTTTTTCTGCAGGAGATACCGTGCCAAGATAGTGGCTAGAA ATCCAAAGTTGAGTTTCGCTCAAATATCAAAGTTACTTTCTCACATGTGG CGAAACGCATCTGAGCAAGAGAAAAACACTTATCGGCTAAAGTTAGAACA GCATCGCACGAAAGTGAATGCCATCGTTGAAAAGAACatgattgaaaaaa tgaagatggtCAAACAACAGAAATTGATGGAAGAAATTCAACGACGCAGC GATGAAGAGCATCCACTGATAGCTACATCATCTGCTGAGTTACACGATTA TGAGGTTGTCCAACAACATCAACAAGAAGATTCGGAAGATGTCCATCAAG AAGAGATACCTGTGGAGGAGGAAGAGGAGTCACAGGAAGAATCTCAACTC TCCATCATAGAGTCTCTTGAGAAGGAGAGTGTTGCAGCCGCAGCAGAAAT TACACAAACAACAGACgatggagaacaagaagaagagaCTGTAGAGCAAA ATGAAGAACCGGAAATTTCGCACGCTGTCATAGACCCTCAAACTAAAATG ATGTTACTGGAGGGTGAAAGTTAACAATAATATTCATCTTTGAATACCCC TCCTCGTTGTCTTTTTAAACTTtaccttttttttcatttttcatccaaCT ACCTTAGTAATAATGGTTATGATCTCATGCTAGAATCACTTGTTCAATCA TTTCGAACTTTTCgtgtattttgtaaatatttattGAACGTTTCCTTGAA TGAAATCATGTATCAAAAGTTTAGTGCGTGGCGAACAGGGACTCGTGGAG ACCCTGAAAATAGAGGCTTTTAGAACAATTGCAAATGAAAAGGGTGTACT TTAATATGAATGCCTAATTATTTTACTTCTTCTTATACGATCAAGTTACT AAAAGGACTAAAGGAGAAAGATATGCTAAGAACGTAGTTTTTCACGTTTA TTTGATTTGCACAGCCTTTTAATTTTCTTTGGCTAGGAAATGCTTTTCAT CCTTGAAATTAGTGAAGATTATATGCGTCTCCATTTTTAGAGTTTGAATA ACATAATGAAActgtaaatttaaaatttcactcGTTCCATTCTCTTCGTT GTTCTTCTATTAATCGAGGAACTTGTGTTTTTGTATAGATTTCTATATTT CATTTATATTATTGATCGTCTTCCGGTGTCAAAATATTCAAagatattat tttaaaatt Run BLAST on NCBI protein sequence of TCONS_00073199-protein >TCONS_00073199-protein ID=TCONS_00073199-protein|Name=TCONS_00073199-protein|organism=Clytia hemisphaerica|type=polypeptide|length=391bp
MASKEDLVKSIIIKQNSGESSSKSETNAKSQTEETTTVEVIVSKTSATEG SSETGQEYVYWARRGENELETAGEVEVSSSGVEQENVNPEECGELLLVRE TEANGAQISSVRDPNSLVYGLQVAAEQITAAHEIQTAGEAAEAFGQITEE FIEQQQRLEAKREAAKLQEKLMNEEYQKAIGYLLCSSKSKSGKQKKKQTM TAYLFFCRRYRAKIVARNPKLSFAQISKLLSHMWRNASEQEKNTYRLKLE QHRTKVNAIVEKNMIEKMKMVKQQKLMEEIQRRSDEEHPLIATSSAELHD YEVVQQHQQEDSEDVHQEEIPVEEEEESQEESQLSIIESLEKESVAAAAE ITQTTDDGEQEEETVEQNEEPEISHAVIDPQTKMMLLEGES Run BLAST on NCBI transcript from alignment at scaffold_88:162521..167926+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00073199 ID=TCONS_00073199|Name=TCONS_00073199|organism=Clytia hemisphaerica|type=transcript|length=5406bp|location=Sequence derived from alignment at scaffold_88:162521..167926+ (Clytia hemisphaerica) ATGGGACGACAATTCGACCACCATTTCacagaacctccaaagtcatttga
tttgagttaatgaacagcatattaaaaaatacatgatttctcttttgcac
ccatttattaaaatttcgaaaaatttccaagAGTACCCAGTGGTTTCCAT
TATTGTCAAAACGATTCTCTCTGTCAAAGTTTCTGATTCTACTCTTaata
attatgtaaataatagcttctttttattaattttagttgaaacaaaattg
aaatgatGTAGATTATAAAAAGAGACAGTTTCAATCCAGCTCCCAAAAAT
GGCATCTAAAGAGGATTTAGTGAAAAGCATCATCATAAAACAAAACAGTG
GAGAGTCATCAAGCAAAAGTGAAACAAATGCAAAATCACAAACCGAGGAA
ACAACAACAGTGGAAGTCATTGTCAGCAAAACATCTGCCACTGAAGGGTC
AAGTGAAACTGGACAAGAGTATGTGTATTGGGCACGTCGTGGTGAAAATG
AATTAGAAACTGCTGGAGAAGTTGAAGTCAGCAGTAGCGGAGTTGAACAG
GAAAATGGTatcataaaaattttattttcttcattgtACACAATGTTGTG
TTTAAAGAGACTTTTCCTTCTCATGCTCATCTTGCTCTGTAAGATCCATT
CCGTCTCAATATATATGTAAAGATCCACTTTCCGTCTCCAAAGAGAAACC
TTGCTTTGACTACTGGTGATAACCATGATGTCAACAAAACTATTTTCAGT
TCTCTGTTACTATACTACGTACNTATAGTTTTTCATTACTTCTCGGGCTA
AAGTGTTTTGACAACCATATAAAAAGAGATAGCTTGGTTGAATATTAAAA
CAATGAAGGAGaaggtaaagaaaaaaaaacaggactAAAACAAAggcaat
tcatgatatcaatgacaagaaatcaaaaatatcatgaattcttttgtaag
aactttttgaagttcACACAACAAAGCGAAAAATAATAGCAATATAATAC
AAAACAGTAGCACACAAAATAAACANNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNGTTCCCTAGCCTAGCGACTTCAGACGACG
CCGAATTCAATGGTCAACAAtgagaaaacagcgagcggcagcggcgattc
ttatcctcttttcccaaatctctggtaCTAGCTAATCTAAAATCAAATTG
TCCAATTGTACTTGGTTTAGACCAATTAAAGTCTTCATTAAAGCTTAACG
GTACCCTCACTAGTAAGGTAGCTTATTAGTCTATATatacccctcccaaa
ttgaaattttcaattacatttaacaaatagaccaaaagtCACTTTCTCAT
CCAAACTTCAATTCTCTAAAAACGAGGAAACTTCTCAATTTATTTTGACG
TAAATTGCAGGCCCAATATCTGTTCTTGTTCAGTACAAATGGGCAAGAGT
TTATCaatttgataatattttatACATAATATGAATGATATTCTTGTGCT
TTAGTCAACCCAGAAGAATGTGGCGAATTATTACTGGTACGAGAAACTGA
AGCTAATGGTGCTCAAATTTCTTCTGTTCGTGATCCAAACAGTCTAGTGT
ACGGTTTGCAAGTCGCTGCTGAACAAATCACTGCTGCTCATGAGATACAA
ACGGCTGGAGAGGCTGCCGAAGCCTTTGGTCAAATCACTGAAGAATTTAT
TGAACAGCAGCAGCGGTTAGAGGCTAAACGAGAGGCTGCTAAACTacaag
aaaaactaatgaacgaGGAATACCAAAAAGCCATTGGTTATTTATTATGT
TCGAGTAAATCAAAAAGTgggaaacaaaagaagaaacaaaCAATGACTGC
TTATTTGTTTTTCTGCAGGAGATACCGTGCCAAGATAGTGGCTAGAAATC
CAAAGTTGAGTTTCGCTCAAATATCAAAGTTACTTTCTCACATGTGGCGA
AACGCATCTGAGCAAGAGAAAAACACTTATCGGCTAAAGTTAGAACAGCA
TCGCACGAAAGTGAATGCCATCGTTGAAAAGAACatgattgaaaaaatga
agatggtCAAACAACAGAAATTGATGGAAGAAATTCAACGACGCAGCGAT
GAAGAGCATCCACTGATAGCTACATCATCTGCTGAGTTACACGATTATGA
GGTTGTCCAACAACATCAACAAGAAGATTCGGAAGATGTCCATCAAGAAG
AGATACCTGTGGAGGAGGAAGAGGAGTCACAGGAAGAATCTCAACTCTCC
ATCATAGAGTCTCTTGAGAAGGAGAGTGTTGCAGCCGCAGCAGAAATTAC
ACAAACAACAGACgatggagaacaagaagaagagaCTGTAGAGCAAAATG
AAGAACCGGAAATTTCGCACGCTGTCATAGACCCTCAAACTAAAATGATG
TTACTGGAGGGTGAAAGTTAACAATAATATTCATCTTTGAATACCCCTCC
TCGTTGTCTTTTTAAACTTtaccttttttttcatttttcatccaaCTACC
TTAGTAATAATGGTTATGATCTCATGCTAGAATCACTTGTTCAATCATTT
CGAACTTTTCgtgtattttgtaaatatttattGAACGTTTCCTTGAATGA
AATCATGTATCAAAAGTTTAGTGCGTGGCGAACAGGGACTCGTGGAGACC
CTGAAAATAGAGGCTTTTAGAACAATTGCAAATGAAAAGGGTGTACTTTA
ATATGAATGCCTAATTATTTTACTTCTTCTTATACGATCAAGTTACTAAA
AGGACTAAAGGAGAAAGATATGCTAAGAACGTAGTTTTTCACGTTTATTT
GATTTGCACAGCCTTTTAATTTTCTTTGGCTAGGAAATGCTTTTCATCCT
TGAAATTAGTGAAGATTATATGCGTCTCCATTTTTAGAGTTTGAATAACA
TAATGAAActgtaaatttaaaatttcactcGTTCCATTCTCTTCGTTGTT
CTTCTATTAATCGAGGAACTTGTGTTTTTGTATAGATTTCTATATTTCAT
TTATATTATTGATCGTCTTCCGGTGTCAAAATATTCAAagatattatttt
aaaatt Coding sequence (CDS) from alignment at scaffold_88:162521..167926+ >TCONS_00073199 ID=TCONS_00073199|Name=TCONS_00073199|organism=Clytia hemisphaerica|type=CDS|length=2352bp|location=Sequence derived from alignment at scaffold_88:162521..167926+ (Clytia hemisphaerica) ATGGCATCTAAAGAGGATTTAGTGAAAAGCATCATCATAAAACAAAACAG TGGAGAGTCATCAAGCAAAAGTGAAACAAATGCAAAATCACAAACCGAGG AAACAACAACAGTGGAAGTCATTGTCAGCAAAACATCTGCCACTGAAGGG TCAAGTGAAACTGGACAAGAGTATGTGTATTGGGCACGTCGTGGTGAAAA TGAATTAGAAACTGCTGGAGAAGTTGAAGTCAGCAGTAGCGGAGTTGAAC AGGAAAATGTCAACCCAGAAGAATGTGGCGAATTATTACTGGTACGAGAA ACTGAAGCTAATGGTGCTCAAATTTCTTCTGTTCGTGATCCAAACAGTCT AGTGTACGGTTTGCAAGTCGCTGCTGAACAAATCACTGCTGCTCATGAGA TACAAACGGCTGGAGAGGCTGCCGAAGCCTTTGGTCAAATCACTGAAGAA TTTATTGAACAGCAGCAGCGGTTAGAGGCTAAACGAGAGGCTGCTAAACT acaagaaaaactaatgaacgaGGAATACCAAAAAGCCATTGGTTATTTAT TATGTTCGAGTAAATCAAAAAGTgggaaacaaaagaagaaacaaaCAATG ACTGCTTATTTGTTTTTCTGCAGGAGATACCGTGCCAAGATAGTGGCTAG AAATCCAAAGTTGAGTTTCGCTCAAATATCAAAGTTACTTTCTCACATGT GGCGAAACGCATCTGAGCAAGAGAAAAACACTTATCGGCTAAAGTTAGAA CAGCATCGCACGAAAGTGAATGCCATCGTTGAAAAGAACatgattgaaaa aatgaagatggtCAAACAACAGAAATTGATGGAAGAAATTCAACGACGCA GCGATGAAGAGCATCCACTGATAGCTACATCATCTGCTGAGTTACACGAT TATGAGGTTGTCCAACAACATCAACAAGAAGATTCGGAAGATGTCCATCA AGAAGAGATACCTGTGGAGGAGGAAGAGGAGTCACAGGAAGAATCTCAAC TCTCCATCATAGAGTCTCTTGAGAAGGAGAGTGTTGCAGCCGCAGCAGAA ATTACACAAACAACAGACgatggagaacaagaagaagagaCTGTAGAGCA AAATGAAGAACCGGAAATTTCGCACGCTGTCATAGACCCTCAAACTAAAA TGATGTTACTGGAGGGTGAAAGTTAAATGGCATCTAAAGAGGATTTAGTG AAAAGCATCATCATAAAACAAAACAGTGGAGAGTCATCAAGCAAAAGTGA AACAAATGCAAAATCACAAACCGAGGAAACAACAACAGTGGAAGTCATTG TCAGCAAAACATCTGCCACTGAAGGGTCAAGTGAAACTGGACAAGAGTAT GTGTATTGGGCACGTCGTGGTGAAAATGAATTAGAAACTGCTGGAGAAGT TGAAGTCAGCAGTAGCGGAGTTGAACAGGAAAATGTCAACCCAGAAGAAT GTGGCGAATTATTACTGGTACGAGAAACTGAAGCTAATGGTGCTCAAATT TCTTCTGTTCGTGATCCAAACAGTCTAGTGTACGGTTTGCAAGTCGCTGC TGAACAAATCACTGCTGCTCATGAGATACAAACGGCTGGAGAGGCTGCCG AAGCCTTTGGTCAAATCACTGAAGAATTTATTGAACAGCAGCAGCGGTTA GAGGCTAAACGAGAGGCTGCTAAACTacaagaaaaactaatgaacgaGGA ATACCAAAAAGCCATTGGTTATTTATTATGTTCGAGTAAATCAAAAAGTg ggaaacaaaagaagaaacaaaCAATGACTGCTTATTTGTTTTTCTGCAGG AGATACCGTGCCAAGATAGTGGCTAGAAATCCAAAGTTGAGTTTCGCTCA AATATCAAAGTTACTTTCTCACATGTGGCGAAACGCATCTGAGCAAGAGA AAAACACTTATCGGCTAAAGTTAGAACAGCATCGCACGAAAGTGAATGCC ATCGTTGAAAAGAACatgattgaaaaaatgaagatggtCAAACAACAGAA ATTGATGGAAGAAATTCAACGACGCAGCGATGAAGAGCATCCACTGATAG CTACATCATCTGCTGAGTTACACGATTATGAGGTTGTCCAACAACATCAA CAAGAAGATTCGGAAGATGTCCATCAAGAAGAGATACCTGTGGAGGAGGA AGAGGAGTCACAGGAAGAATCTCAACTCTCCATCATAGAGTCTCTTGAGA AGGAGAGTGTTGCAGCCGCAGCAGAAATTACACAAACAACAGACgatgga gaacaagaagaagagaCTGTAGAGCAAAATGAAGAACCGGAAATTTCGCA CGCTGTCATAGACCCTCAAACTAAAATGATGTTACTGGAGGGTGAAAGTT AA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00073199-exon-scaffold_88-1491911889:162521..163077 | TCONS_00073199-exon-scaffold_88-1491911889:162521..163077 | Clytia hemisphaerica | exon |
TCONS_00073199-exon-scaffold_88-1510915933:162521..163077 | TCONS_00073199-exon-scaffold_88-1510915933:162521..163077 | Clytia hemisphaerica | exon |
TCONS_00073199-exon-scaffold_88-1575043694:162521..163077 | TCONS_00073199-exon-scaffold_88-1575043694:162521..163077 | Clytia hemisphaerica | exon |
TCONS_00073199-exon-scaffold_88-1491911889:166375..167926 | TCONS_00073199-exon-scaffold_88-1491911889:166375..167926 | Clytia hemisphaerica | exon |
TCONS_00073199-exon-scaffold_88-1510915933:166375..167926 | TCONS_00073199-exon-scaffold_88-1510915933:166375..167926 | Clytia hemisphaerica | exon |
TCONS_00073199-exon-scaffold_88-1575043694:166375..167926 | TCONS_00073199-exon-scaffold_88-1575043694:166375..167926 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_88 | supercontig | scaffold_88:162521..167926 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
Term | Definition |
IPR009071 | HMG_box_dom |
Blast
The following BLAST results are available for this feature:
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