TCONS_00073192 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073192
Unique NameTCONS_00073192
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length572

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073192 ID=TCONS_00073192|Name=TCONS_00073192|organism=Clytia hemisphaerica|type=transcript|length=572bp
AAACAATCAATTTTGCCGCGTcagcaataaaaacaattgttttGCCGAGT
CAGCAAAAATAATCAATATTACTAATTTCTCAGAATTTTCGTCGAAATTT
GCAAAATGGCTGAGGCAGAAAaactttgattaaaaaattagaAACTCTGA
CTTCGTTCTAATCTAAATGaatgtgaaaatgttttactgGCAATCAAATC
ATCTTCGTAACAGAAAGATACAAATTGAAGTTAACCAGAAAGATGTACTC
AAAGATGATCAAATGATGAGCTTCAAAGACTTTAGGacacttttaaactt
ttgaggACGACCTGGCCTAAAGTACCAAAAGACAGATGAGTTAAAGAACT
AATATGTTGTGAATGTTTATCATTTATTATGGCTGATCACTTTTCTACTT
AACTTTCGTGTTTGCAAAACTTGCAGATATATGAAACTCTAAAAAGGCAT
TCCACCATTTATGAAATCAGCGCTGATTTCATAAATGGTGGAATGATTAA
CCCAATCTTATTGAATTCATACTCTTGACATTCAATTAAATTGATTGGAA
ActtgagaatatttttggtATN
Run BLAST on NCBI

transcript from alignment at scaffold_87:171159..171730

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073192 ID=TCONS_00073192|Name=TCONS_00073192|organism=Clytia hemisphaerica|type=transcript|length=572bp|location=Sequence derived from alignment at scaffold_87:171159..171730 (Clytia hemisphaerica)
NATaccaaaaatattctcaagTTTCCAATCAATTTAATTGAATGTCAAGA
GTATGAATTCAATAAGATTGGGTTAATCATTCCACCATTTATGAAATCAG
CGCTGATTTCATAAATGGTGGAATGCCTTTTTAGAGTTTCATATATCTGC
AAGTTTTGCAAACACGAAAGTTAAGTAGAAAAGTGATCAGCCATAATAAA
TGATAAACATTCACAACATATTAGTTCTTTAACTCATCTGTCTTTTGGTA
CTTTAGGCCAGGTCGTcctcaaaagtttaaaagtgtCCTAAAGTCTTTGA
AGCTCATCATTTGATCATCTTTGAGTACATCTTTCTGGTTAACTTCAATT
TGTATCTTTCTGTTACGAAGATGATTTGATTGCcagtaaaacattttcac
attCATTTAGATTAGAACGAAGTCAGAGTTtctaattttttaatcaaagt
tTTTCTGCCTCAGCCATTTTGCAAATTTCGACGAAAATTCTGAGAAATTA
GTAATATTGATTATTTTTGCTGACTCGGCaaaacaattgtttttattgct
gACGCGGCAAAATTGATTGTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045404XLOC_045404Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073192-exon-scaffold_87-1491911889:171159..171730TCONS_00073192-exon-scaffold_87-1491911889:171159..171730Clytia hemisphaericaexon
TCONS_00073192-exon-scaffold_87-1510915933:171159..171730TCONS_00073192-exon-scaffold_87-1510915933:171159..171730Clytia hemisphaericaexon
TCONS_00073192-exon-scaffold_87-1575043694:171159..171730TCONS_00073192-exon-scaffold_87-1575043694:171159..171730Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_87supercontigscaffold_87:171159..171730 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.448323	0.626343	0.164217	0	1.73646	2.17988	3.19667	1.19961	1.31117	2.32183	2.19183	1.4519	1.56787	1.77914	2.63809	2.55274	1.95846	4.33466	5.28861	8.75468	5.42407	4.06099	3.80892	5.04194	1.63985	1.80501	15.4668	13.4489	17.3177	13.2615
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073192 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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