TCONS_00073189 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073189
Unique NameTCONS_00073189
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length932

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073189 ID=TCONS_00073189|Name=TCONS_00073189|organism=Clytia hemisphaerica|type=transcript|length=932bp
CAAAAGAACAATCCATCAATGGCATCGCGCAAACATCCCAGAAATCAAAG
ATTCCATTAAACAAGACTTTACCAACTTCTGTCGGTTACACAATCACTTA
ACATACTATGGGATGAGTTCATAAACATCTCAGAGTCAGCCATGTCTAAG
GTACCAACCAAGGAGTCCTCGCAACGCTACCATGTACCGTGGATTAATAG
AGAGTGTAAGCGTACATCCCGAAGACAAAggcgtgcttataaaaaagcaa
agaGAACAAATGTAGACTCCGATTGGGAAAGATTCCGTTCACTTCGCAAG
AAAAATAAGACGTCATGCCAAAAGGCATATGACTCTTACATCAATGACTC
AATAATGAATGACAACCCCAAAAAGTTTTACAAATTCATTAAAAGTAAAC
GCCAAGACAGTGTTGGTGTACCAACTTTGAAAGTAAACAATAAAGTGATT
ATTGACGACCAAATGAAGGCTGAAGTATTAAACAGCCAGTATTGTAGTGT
TTTCTCCAACCCAGATGGTAAAACTCCACCCATACCTAACAGAGTTGTCA
ATCAAATGAGTGACTTTACAGTATCATCTGATGGGATTAAGAAACTCATC
AAATCCCTCAGGCCACATAAAGCAACCGGCCCAGATACCATTAAAGCCAG
ATTCCTCATCGAGTTTGCAGATGAAATATCTCCTGCCCTGAAACTTATCT
TTGAAGCTTCTCTAAAACAATCTGAACTCCCGACAGCTTGGAAACATGCC
CTCATTGTCCCAGCATACAAAGGGAATGGGAAATGTCGAAGTAATCCTGA
AAGCTACAGACCAATATCACTTACTTCCATCGTTTGTAAATTGCTAGAAC
ACATACTTTACAGTAAAGTAATGTCGCACCTAACCGAAAACAAAGTATTG
TCAGAGTTGCAACATGGTTTCAGAGAAAAAAG
Run BLAST on NCBI

protein sequence of TCONS_00073189-protein

>TCONS_00073189-protein ID=TCONS_00073189-protein|Name=TCONS_00073189-protein|organism=Clytia hemisphaerica|type=polypeptide|length=263bp
MSKVPTKESSQRYHVPWINRECKRTSRRQRRAYKKAKRTNVDSDWERFRS
LRKKNKTSCQKAYDSYINDSIMNDNPKKFYKFIKSKRQDSVGVPTLKVNN
KVIIDDQMKAEVLNSQYCSVFSNPDGKTPPIPNRVVNQMSDFTVSSDGIK
KLIKSLRPHKATGPDTIKARFLIEFADEISPALKLIFEASLKQSELPTAW
KHALIVPAYKGNGKCRSNPESYRPISLTSIVCKLLEHILYSKVMSHLTEN
KVLSELQHGFREK
Run BLAST on NCBI

transcript from alignment at scaffold_87:162977..163908

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073189 ID=TCONS_00073189|Name=TCONS_00073189|organism=Clytia hemisphaerica|type=transcript|length=932bp|location=Sequence derived from alignment at scaffold_87:162977..163908 (Clytia hemisphaerica)
CTTTTTTCTCTGAAACCATGTTGCAACTCTGACAATACTTTGTTTTCGGT TAGGTGCGACATTACTTTACTGTAAAGTATGTGTTCTAGCAATTTACAAA CGATGGAAGTAAGTGATATTGGTCTGTAGCTTTCAGGATTACTTCGACAT TTCCCATTCCCTTTGTATGCTGGGACAATGAGGGCATGTTTCCAAGCTGT CGGGAGTTCAGATTGTTTTAGAGAAGCTTCAAAGATAAGTTTCAGGGCAG GAGATATTTCATCTGCAAACTCGATGAGGAATCTGGCTTTAATGGTATCT GGGCCGGTTGCTTTATGTGGCCTGAGGGATTTGATGAGTTTCTTAATCCC ATCAGATGATACTGTAAAGTCACTCATTTGATTGACAACTCTGTTAGGTA TGGGTGGAGTTTTACCATCTGGGTTGGAGAAAACACTACAATACTGGCTG TTTAATACTTCAGCCTTCATTTGGTCGTCAATAATCACTTTATTGTTTAC TTTCAAAGTTGGTACACCAACACTGTCTTGGCGTTTACTTTTAATGAATT TGTAAAACTTTTTGGGGTTGTCATTCATTATTGAGTCATTGATGTAAGAG TCATATGCCTTTTGGCATGACGTCTTATTTTTCTTGCGAAGTGAACGGAA TCTTTCCCAATCGGAGTCTACATTTGTTCtctttgcttttttataagcac gccTTTGTCTTCGGGATGTACGCTTACACTCTCTATTAATCCACGGTACA TGGTAGCGTTGCGAGGACTCCTTGGTTGGTACCTTAGACATGGCTGACTC TGAGATGTTTATGAACTCATCCCATAGTATGTTAAGTGATTGTGTAACCG ACAGAAGTTGGTAAAGTCTTGTTTAATGGAATCTTTGATTTCTGGGATGT TTGCGCGATGCCATTGATGGATTGTTCTTTTG

Coding sequence (CDS) from alignment at scaffold_87:162977..163908

>TCONS_00073189 ID=TCONS_00073189|Name=TCONS_00073189|organism=Clytia hemisphaerica|type=CDS|length=789bp|location=Sequence derived from alignment at scaffold_87:162977..163908 (Clytia hemisphaerica)
TTTTTCTCTGAAACCATGTTGCAACTCTGACAATACTTTGTTTTCGGTTA
GGTGCGACATTACTTTACTGTAAAGTATGTGTTCTAGCAATTTACAAACG
ATGGAAGTAAGTGATATTGGTCTGTAGCTTTCAGGATTACTTCGACATTT
CCCATTCCCTTTGTATGCTGGGACAATGAGGGCATGTTTCCAAGCTGTCG
GGAGTTCAGATTGTTTTAGAGAAGCTTCAAAGATAAGTTTCAGGGCAGGA
GATATTTCATCTGCAAACTCGATGAGGAATCTGGCTTTAATGGTATCTGG
GCCGGTTGCTTTATGTGGCCTGAGGGATTTGATGAGTTTCTTAATCCCAT
CAGATGATACTGTAAAGTCACTCATTTGATTGACAACTCTGTTAGGTATG
GGTGGAGTTTTACCATCTGGGTTGGAGAAAACACTACAATACTGGCTGTT
TAATACTTCAGCCTTCATTTGGTCGTCAATAATCACTTTATTGTTTACTT
TCAAAGTTGGTACACCAACACTGTCTTGGCGTTTACTTTTAATGAATTTG
TAAAACTTTTTGGGGTTGTCATTCATTATTGAGTCATTGATGTAAGAGTC
ATATGCCTTTTGGCATGACGTCTTATTTTTCTTGCGAAGTGAACGGAATC
TTTCCCAATCGGAGTCTACATTTGTTCtctttgcttttttataagcacgc
cTTTGTCTTCGGGATGTACGCTTACACTCTCTATTAATCCACGGTACATG
GTAGCGTTGCGAGGACTCCTTGGTTGGTACCTTAGACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045401XLOC_045401Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073189-proteinTCONS_00073189-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073189-exon-scaffold_87-1491911889:162977..163908TCONS_00073189-exon-scaffold_87-1491911889:162977..163908Clytia hemisphaericaexon
TCONS_00073189-exon-scaffold_87-1510915933:162977..163908TCONS_00073189-exon-scaffold_87-1510915933:162977..163908Clytia hemisphaericaexon
TCONS_00073189-exon-scaffold_87-1575043694:162977..163908TCONS_00073189-exon-scaffold_87-1575043694:162977..163908Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_87supercontigscaffold_87:162977..163908 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.08867 2.09119 2.4858 1.47888 1.23619 0.490891 0.730408 1.24773 0.312636 0.476313 0.818326 0.87027 0.713452 0.802945 0.602016 0.843345 0.951408 0.823523 0.956741 1.2953 1.56976 0.932121 0.179395 0.429763 0.722995 0.523289 1.37063 0.757935 0.517436 0.406801
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073189 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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