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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073189 ID=TCONS_00073189|Name=TCONS_00073189|organism=Clytia hemisphaerica|type=transcript|length=932bp
CAAAAGAACAATCCATCAATGGCATCGCGCAAACATCCCAGAAATCAAAG
ATTCCATTAAACAAGACTTTACCAACTTCTGTCGGTTACACAATCACTTA
ACATACTATGGGATGAGTTCATAAACATCTCAGAGTCAGCCATGTCTAAG
GTACCAACCAAGGAGTCCTCGCAACGCTACCATGTACCGTGGATTAATAG
AGAGTGTAAGCGTACATCCCGAAGACAAAggcgtgcttataaaaaagcaa
agaGAACAAATGTAGACTCCGATTGGGAAAGATTCCGTTCACTTCGCAAG
AAAAATAAGACGTCATGCCAAAAGGCATATGACTCTTACATCAATGACTC
AATAATGAATGACAACCCCAAAAAGTTTTACAAATTCATTAAAAGTAAAC
GCCAAGACAGTGTTGGTGTACCAACTTTGAAAGTAAACAATAAAGTGATT
ATTGACGACCAAATGAAGGCTGAAGTATTAAACAGCCAGTATTGTAGTGT
TTTCTCCAACCCAGATGGTAAAACTCCACCCATACCTAACAGAGTTGTCA
ATCAAATGAGTGACTTTACAGTATCATCTGATGGGATTAAGAAACTCATC
AAATCCCTCAGGCCACATAAAGCAACCGGCCCAGATACCATTAAAGCCAG
ATTCCTCATCGAGTTTGCAGATGAAATATCTCCTGCCCTGAAACTTATCT
TTGAAGCTTCTCTAAAACAATCTGAACTCCCGACAGCTTGGAAACATGCC
CTCATTGTCCCAGCATACAAAGGGAATGGGAAATGTCGAAGTAATCCTGA
AAGCTACAGACCAATATCACTTACTTCCATCGTTTGTAAATTGCTAGAAC
ACATACTTTACAGTAAAGTAATGTCGCACCTAACCGAAAACAAAGTATTG
TCAGAGTTGCAACATGGTTTCAGAGAAAAAAG Run BLAST on NCBI protein sequence of TCONS_00073189-protein >TCONS_00073189-protein ID=TCONS_00073189-protein|Name=TCONS_00073189-protein|organism=Clytia hemisphaerica|type=polypeptide|length=263bp
MSKVPTKESSQRYHVPWINRECKRTSRRQRRAYKKAKRTNVDSDWERFRS
LRKKNKTSCQKAYDSYINDSIMNDNPKKFYKFIKSKRQDSVGVPTLKVNN
KVIIDDQMKAEVLNSQYCSVFSNPDGKTPPIPNRVVNQMSDFTVSSDGIK
KLIKSLRPHKATGPDTIKARFLIEFADEISPALKLIFEASLKQSELPTAW
KHALIVPAYKGNGKCRSNPESYRPISLTSIVCKLLEHILYSKVMSHLTEN
KVLSELQHGFREK Run BLAST on NCBI transcript from alignment at scaffold_87:162977..163908 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00073189 ID=TCONS_00073189|Name=TCONS_00073189|organism=Clytia hemisphaerica|type=transcript|length=932bp|location=Sequence derived from alignment at scaffold_87:162977..163908 (Clytia hemisphaerica)
CTTTTTTCTCTGAAACCATGTTGCAACTCTGACAATACTTTGTTTTCGGT
TAGGTGCGACATTACTTTACTGTAAAGTATGTGTTCTAGCAATTTACAAA
CGATGGAAGTAAGTGATATTGGTCTGTAGCTTTCAGGATTACTTCGACAT
TTCCCATTCCCTTTGTATGCTGGGACAATGAGGGCATGTTTCCAAGCTGT
CGGGAGTTCAGATTGTTTTAGAGAAGCTTCAAAGATAAGTTTCAGGGCAG
GAGATATTTCATCTGCAAACTCGATGAGGAATCTGGCTTTAATGGTATCT
GGGCCGGTTGCTTTATGTGGCCTGAGGGATTTGATGAGTTTCTTAATCCC
ATCAGATGATACTGTAAAGTCACTCATTTGATTGACAACTCTGTTAGGTA
TGGGTGGAGTTTTACCATCTGGGTTGGAGAAAACACTACAATACTGGCTG
TTTAATACTTCAGCCTTCATTTGGTCGTCAATAATCACTTTATTGTTTAC
TTTCAAAGTTGGTACACCAACACTGTCTTGGCGTTTACTTTTAATGAATT
TGTAAAACTTTTTGGGGTTGTCATTCATTATTGAGTCATTGATGTAAGAG
TCATATGCCTTTTGGCATGACGTCTTATTTTTCTTGCGAAGTGAACGGAA
TCTTTCCCAATCGGAGTCTACATTTGTTCtctttgcttttttataagcac
gccTTTGTCTTCGGGATGTACGCTTACACTCTCTATTAATCCACGGTACA
TGGTAGCGTTGCGAGGACTCCTTGGTTGGTACCTTAGACATGGCTGACTC
TGAGATGTTTATGAACTCATCCCATAGTATGTTAAGTGATTGTGTAACCG
ACAGAAGTTGGTAAAGTCTTGTTTAATGGAATCTTTGATTTCTGGGATGT
TTGCGCGATGCCATTGATGGATTGTTCTTTTG Coding sequence (CDS) from alignment at scaffold_87:162977..163908 >TCONS_00073189 ID=TCONS_00073189|Name=TCONS_00073189|organism=Clytia hemisphaerica|type=CDS|length=789bp|location=Sequence derived from alignment at scaffold_87:162977..163908 (Clytia hemisphaerica)
TTTTTCTCTGAAACCATGTTGCAACTCTGACAATACTTTGTTTTCGGTTA
GGTGCGACATTACTTTACTGTAAAGTATGTGTTCTAGCAATTTACAAACG
ATGGAAGTAAGTGATATTGGTCTGTAGCTTTCAGGATTACTTCGACATTT
CCCATTCCCTTTGTATGCTGGGACAATGAGGGCATGTTTCCAAGCTGTCG
GGAGTTCAGATTGTTTTAGAGAAGCTTCAAAGATAAGTTTCAGGGCAGGA
GATATTTCATCTGCAAACTCGATGAGGAATCTGGCTTTAATGGTATCTGG
GCCGGTTGCTTTATGTGGCCTGAGGGATTTGATGAGTTTCTTAATCCCAT
CAGATGATACTGTAAAGTCACTCATTTGATTGACAACTCTGTTAGGTATG
GGTGGAGTTTTACCATCTGGGTTGGAGAAAACACTACAATACTGGCTGTT
TAATACTTCAGCCTTCATTTGGTCGTCAATAATCACTTTATTGTTTACTT
TCAAAGTTGGTACACCAACACTGTCTTGGCGTTTACTTTTAATGAATTTG
TAAAACTTTTTGGGGTTGTCATTCATTATTGAGTCATTGATGTAAGAGTC
ATATGCCTTTTGGCATGACGTCTTATTTTTCTTGCGAAGTGAACGGAATC
TTTCCCAATCGGAGTCTACATTTGTTCtctttgcttttttataagcacgc
cTTTGTCTTCGGGATGTACGCTTACACTCTCTATTAATCCACGGTACATG
GTAGCGTTGCGAGGACTCCTTGGTTGGTACCTTAGACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00073189-exon-scaffold_87-1491911889:162977..163908 | TCONS_00073189-exon-scaffold_87-1491911889:162977..163908 | Clytia hemisphaerica | exon |
| TCONS_00073189-exon-scaffold_87-1510915933:162977..163908 | TCONS_00073189-exon-scaffold_87-1510915933:162977..163908 | Clytia hemisphaerica | exon |
| TCONS_00073189-exon-scaffold_87-1575043694:162977..163908 | TCONS_00073189-exon-scaffold_87-1575043694:162977..163908 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_87 | supercontig | scaffold_87:162977..163908 . |
Blast
The following BLAST results are available for this feature:
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