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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073185 ID=TCONS_00073185|Name=TCONS_00073185|organism=Clytia hemisphaerica|type=transcript|length=1345bp
ACCAAAACCACGCCCCCAATGAGATGGAGGCAATCCAAGAAGTACCATCT
GAAGTTGAGGACAATGACCACAACCTGATGCCACTGAAGAGGGTGATTGA
TTTACCAGAAGCGCCACAAGTGGATGTACCATCACCCTCCCCCCTCGAAA
TCATTCAACCATCAGCACAAGAATTGTTAGATGACATCGAGGTTGAAGAT
GCGCCAAGCTCAGACAGTGACGTTCCAGAACCCCCCAGGAGATCAAAGAG
AGAACGTAAACCAGCTCAAAGATTTACCTATGACGACTTTGGGCAACCTT
CAATAAAGCCAATAAGGAACATGAGAAATTGGCTGAACGAATCGAAAGAA
GCCCTCTAAATTTTGTTGGGGAGGGAGAAAGGAAAAATATAGAGACATAA
TGTGATTGTTTTCGGAGAAGAATATTTGTTCTAAAATCGGACTGTTAAAT
ATAAATGTCAAATTTAACGCTACATTGTCTGGTGAGCTACAACTGATTAT
GTATCTGGTAGCAAGAAATCATCACAGTTATTAATCGTGTATTTTCTTCG
TTTTATGTACCCCTCCATGCGCACCTCGTCTCAATTGCAACCAACTCAGC
ACCAACGGAAATGAAGTCACTTGTCCAGTGGAGTAACCCCTGAAATAGAC
CTCTTGCTCTTCAGATGATCAAAAATACTGTCAAAGACGATACTTTGGTG
GACTGGCTTCCGCCATTGTGCATCCAACATATTCGGTATGTTATTGCATT
CGTTCACCCTGGAGTAGATTGTTAATCCTCCAGGGCTAAATTGATTCTGA
TGTTGATATACGTTCAATATGGAGAAGAATGTTGATCTTCCAGCTTTAAT
TTCGTCGTCACCCTGGAGTAGATTGCTGATCCTCCAGGGCTCTATGAACT
TTCTTTCAAACGTTTTCGTAAAATGATTTATAAGTTCTTGATGAAACCTA
AACGTattcttcaagtatgtattGTTACATCAATGAACTAAATGAACTTT
TTGAGATTCNCTCAAGGTCTATACTGAAAGTGTTTCTCAGTCAGCAAGTC
CCCCTGTGACATTTTGCCTCGCCTGCCCAACTGGCTGTCATGTCTCTGTT
AGCTCTCCCCAGTCTTGGAATGTCTAGATAAGTCTGACAGGCAGCACAGT
TGGGTGGAGAATGTGGAGCCAGCTACCAGTCTGTTATCTTAGTTGAGTAC
CTATAACTATTAGAACAGTGGCTATGTTTATAAGAGatttagttacagtg
gaatttcgttgccaattcaaccaccaacaataattacttttgtccatatt
caatcattgttctactattatcattttaatcattgttcattattg Run BLAST on NCBI protein sequence of TCONS_00073185-protein >TCONS_00073185-protein ID=TCONS_00073185-protein|Name=TCONS_00073185-protein|organism=Clytia hemisphaerica|type=polypeptide|length=118bp
QNHAPNEMEAIQEVPSEVEDNDHNLMPLKRVIDLPEAPQVDVPSPSPLEI
IQPSAQELLDDIEVEDAPSSDSDVPEPPRRSKRERKPAQRFTYDDFGQPS
IKPIRNMRNWLNESKEAL Run BLAST on NCBI transcript from alignment at scaffold_87:136529..137873 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00073185 ID=TCONS_00073185|Name=TCONS_00073185|organism=Clytia hemisphaerica|type=transcript|length=1345bp|location=Sequence derived from alignment at scaffold_87:136529..137873 (Clytia hemisphaerica)
caataatgaacaatgattaaaatgataatagtagaacaatgattgaatat
ggacaaaagtaattattgttggtggttgaattggcaacgaaattccactg
taactaaatCTCTTATAAACATAGCCACTGTTCTAATAGTTATAGGTACT
CAACTAAGATAACAGACTGGTAGCTGGCTCCACATTCTCCACCCAACTGT
GCTGCCTGTCAGACTTATCTAGACATTCCAAGACTGGGGAGAGCTAACAG
AGACATGACAGCCAGTTGGGCAGGCGAGGCAAAATGTCACAGGGGGACTT
GCTGACTGAGAAACACTTTCAGTATAGACCTTGAGNGAATCTCAAAAAGT
TCATTTAGTTCATTGATGTAACaatacatacttgaagaatACGTTTAGGT
TTCATCAAGAACTTATAAATCATTTTACGAAAACGTTTGAAAGAAAGTTC
ATAGAGCCCTGGAGGATCAGCAATCTACTCCAGGGTGACGACGAAATTAA
AGCTGGAAGATCAACATTCTTCTCCATATTGAACGTATATCAACATCAGA
ATCAATTTAGCCCTGGAGGATTAACAATCTACTCCAGGGTGAACGAATGC
AATAACATACCGAATATGTTGGATGCACAATGGCGGAAGCCAGTCCACCA
AAGTATCGTCTTTGACAGTATTTTTGATCATCTGAAGAGCAAGAGGTCTA
TTTCAGGGGTTACTCCACTGGACAAGTGACTTCATTTCCGTTGGTGCTGA
GTTGGTTGCAATTGAGACGAGGTGCGCATGGAGGGGTACATAAAACGAAG
AAAATACACGATTAATAACTGTGATGATTTCTTGCTACCAGATACATAAT
CAGTTGTAGCTCACCAGACAATGTAGCGTTAAATTTGACATTTATATTTA
ACAGTCCGATTTTAGAACAAATATTCTTCTCCGAAAACAATCACATTATG
TCTCTATATTTTTCCTTTCTCCCTCCCCAACAAAATTTAGAGGGCTTCTT
TCGATTCGTTCAGCCAATTTCTCATGTTCCTTATTGGCTTTATTGAAGGT
TGCCCAAAGTCGTCATAGGTAAATCTTTGAGCTGGTTTACGTTCTCTCTT
TGATCTCCTGGGGGGTTCTGGAACGTCACTGTCTGAGCTTGGCGCATCTT
CAACCTCGATGTCATCTAACAATTCTTGTGCTGATGGTTGAATGATTTCG
AGGGGGGAGGGTGATGGTACATCCACTTGTGGCGCTTCTGGTAAATCAAT
CACCCTCTTCAGTGGCATCAGGTTGTGGTCATTGTCCTCAACTTCAGATG
GTACTTCTTGGATTGCCTCCATCTCATTGGGGGCGTGGTTTTGGT Coding sequence (CDS) from alignment at scaffold_87:136529..137873 >TCONS_00073185 ID=TCONS_00073185|Name=TCONS_00073185|organism=Clytia hemisphaerica|type=CDS|length=357bp|location=Sequence derived from alignment at scaffold_87:136529..137873 (Clytia hemisphaerica)
TTAGAGGGCTTCTTTCGATTCGTTCAGCCAATTTCTCATGTTCCTTATTG
GCTTTATTGAAGGTTGCCCAAAGTCGTCATAGGTAAATCTTTGAGCTGGT
TTACGTTCTCTCTTTGATCTCCTGGGGGGTTCTGGAACGTCACTGTCTGA
GCTTGGCGCATCTTCAACCTCGATGTCATCTAACAATTCTTGTGCTGATG
GTTGAATGATTTCGAGGGGGGAGGGTGATGGTACATCCACTTGTGGCGCT
TCTGGTAAATCAATCACCCTCTTCAGTGGCATCAGGTTGTGGTCATTGTC
CTCAACTTCAGATGGTACTTCTTGGATTGCCTCCATCTCATTGGGGGCGT
GGTTTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00073185-exon-scaffold_87-1491911889:136529..137873 | TCONS_00073185-exon-scaffold_87-1491911889:136529..137873 | Clytia hemisphaerica | exon |
| TCONS_00073185-exon-scaffold_87-1510915933:136529..137873 | TCONS_00073185-exon-scaffold_87-1510915933:136529..137873 | Clytia hemisphaerica | exon |
| TCONS_00073185-exon-scaffold_87-1575043694:136529..137873 | TCONS_00073185-exon-scaffold_87-1575043694:136529..137873 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_87 | supercontig | scaffold_87:136529..137873 . |
Blast
The following BLAST results are available for this feature:
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