TCONS_00073171 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073171
Unique NameTCONS_00073171
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length385

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073171 ID=TCONS_00073171|Name=TCONS_00073171|organism=Clytia hemisphaerica|type=transcript|length=385bp
TTAGTAAATTTTGGATAAAAATCCCATTGTACTTATAActgatttgtttt
gattaaactGGTGGATTATGACGTCACGTATCAAGTCCATGGCAATTATT
GCATTCCAATTAGTTTGACACGCCTTTTTTAAAAGTAGCATAGCTCAGAG
TTATTTCACTTTTACTTGGAGTCAAGAACGTTTGGGATAGTCTTTGAACA
ATAGTATTGTAAGAattttttgtacatatttttcTACTATTTATGTGGTA
TTTTTCTCCCATTTTTAAGCTTTCGAAACGTACGCTATTTCTTTTCTGGA
CATTGGCAATTTCACTACTAAAGGCCGGTGTCCACTTTCGTGCGAAGCGC
GCGATTGATTTTTTCTTAAccgtttttgcctgaag
Run BLAST on NCBI

transcript from alignment at scaffold_87:5825..6209

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073171 ID=TCONS_00073171|Name=TCONS_00073171|organism=Clytia hemisphaerica|type=transcript|length=385bp|location=Sequence derived from alignment at scaffold_87:5825..6209 (Clytia hemisphaerica)
cttcaggcaaaaacggTTAAGAAAAAATCAATCGCGCGCTTCGCACGAAA GTGGACACCGGCCTTTAGTAGTGAAATTGCCAATGTCCAGAAAAGAAATA GCGTACGTTTCGAAAGCTTAAAAATGGGAGAAAAATACCACATAAATAGT AgaaaaatatgtacaaaaaatTCTTACAATACTATTGTTCAAAGACTATC CCAAACGTTCTTGACTCCAAGTAAAAGTGAAATAACTCTGAGCTATGCTA CTTTTAAAAAAGGCGTGTCAAACTAATTGGAATGCAATAATTGCCATGGA CTTGATACGTGACGTCATAATCCACCagtttaatcaaaacaaatcagTTA TAAGTACAATGGGATTTTTATCCAAAATTTACTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045383XLOC_045383Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073171-exon-scaffold_87-1491911889:5825..6209TCONS_00073171-exon-scaffold_87-1491911889:5825..6209Clytia hemisphaericaexon
TCONS_00073171-exon-scaffold_87-1510915933:5825..6209TCONS_00073171-exon-scaffold_87-1510915933:5825..6209Clytia hemisphaericaexon
TCONS_00073171-exon-scaffold_87-1575043694:5825..6209TCONS_00073171-exon-scaffold_87-1575043694:5825..6209Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_87supercontigscaffold_87:5825..6209 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.201578 0.589711 0.228237 0.669883 2.99023 1.9333 2.85076 3.39672 1.69866 1.26244 2.85916 1.8795 1.34063 1.53149 0 0.122836 0.302648 0 0.642846 0.224231 0 0 0 0.210127 5.84349 9.27142 0 0 0.223736 0.683855
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073171 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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