TCONS_00073171 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073171
Unique NameTCONS_00073171
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length385

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073171 ID=TCONS_00073171|Name=TCONS_00073171|organism=Clytia hemisphaerica|type=transcript|length=385bp
TTAGTAAATTTTGGATAAAAATCCCATTGTACTTATAActgatttgtttt
gattaaactGGTGGATTATGACGTCACGTATCAAGTCCATGGCAATTATT
GCATTCCAATTAGTTTGACACGCCTTTTTTAAAAGTAGCATAGCTCAGAG
TTATTTCACTTTTACTTGGAGTCAAGAACGTTTGGGATAGTCTTTGAACA
ATAGTATTGTAAGAattttttgtacatatttttcTACTATTTATGTGGTA
TTTTTCTCCCATTTTTAAGCTTTCGAAACGTACGCTATTTCTTTTCTGGA
CATTGGCAATTTCACTACTAAAGGCCGGTGTCCACTTTCGTGCGAAGCGC
GCGATTGATTTTTTCTTAAccgtttttgcctgaag
Run BLAST on NCBI

transcript from alignment at scaffold_87:5825..6209

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073171 ID=TCONS_00073171|Name=TCONS_00073171|organism=Clytia hemisphaerica|type=transcript|length=385bp|location=Sequence derived from alignment at scaffold_87:5825..6209 (Clytia hemisphaerica)
cttcaggcaaaaacggTTAAGAAAAAATCAATCGCGCGCTTCGCACGAAA
GTGGACACCGGCCTTTAGTAGTGAAATTGCCAATGTCCAGAAAAGAAATA
GCGTACGTTTCGAAAGCTTAAAAATGGGAGAAAAATACCACATAAATAGT
AgaaaaatatgtacaaaaaatTCTTACAATACTATTGTTCAAAGACTATC
CCAAACGTTCTTGACTCCAAGTAAAAGTGAAATAACTCTGAGCTATGCTA
CTTTTAAAAAAGGCGTGTCAAACTAATTGGAATGCAATAATTGCCATGGA
CTTGATACGTGACGTCATAATCCACCagtttaatcaaaacaaatcagTTA
TAAGTACAATGGGATTTTTATCCAAAATTTACTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045383XLOC_045383Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073171-exon-scaffold_87-1491911889:5825..6209TCONS_00073171-exon-scaffold_87-1491911889:5825..6209Clytia hemisphaericaexon
TCONS_00073171-exon-scaffold_87-1510915933:5825..6209TCONS_00073171-exon-scaffold_87-1510915933:5825..6209Clytia hemisphaericaexon
TCONS_00073171-exon-scaffold_87-1575043694:5825..6209TCONS_00073171-exon-scaffold_87-1575043694:5825..6209Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_87supercontigscaffold_87:5825..6209 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.201578	0.589711	0.228237	0.669883	2.99023	1.9333	2.85076	3.39672	1.69866	1.26244	2.85916	1.8795	1.34063	1.53149	0	0.122836	0.302648	0	0.642846	0.224231	0	0	0	0.210127	5.84349	9.27142	0	0	0.223736	0.683855
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073171 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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