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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073168 ID=TCONS_00073168|Name=TCONS_00073168|organism=Clytia hemisphaerica|type=transcript|length=2792bp
aaaaaaaacaaggCTACTGTGTATAAGTCTAGTAAAAGTAAGTCTAAAGA
GCTGActaatatttctttttaaaattcatttttcaactatCCAGAGTTTA
TACTGGTCTTTTTCTGCTCAAGACCAAGAGTGGTGTGTTTCTCCTGGTTT
CTCTGGGAATGAGGGAGATGTATACCCTAATTTTTTCCTCCATCAGAATT
ATTAAAAGGCAAAAAGAAGTTGAGCAACAGCTTCTGGACTATGATTATTT
ATTCTCTAAAAACCATGAAgcgtataatttttttaaagattttgccAATT
ATATATATAATAACCATTTCTTTTTCATGCGTagagttaaaataaaaaaa
tataacttcgaactttcaaaagaaactttgataTAAATTATATAATGAAC
TTTTTTAAACCGTCACCGTGCATGATAACTAAAGCAAGCATACTGTGTGT
CAAAAGATCTTTAACTCACCTATTtttaaatgacaaattgatttaaaatt
tgaTTGAACGAATGTTATAAAAGTACAGCCCTATTTTTTCACTTTGCTGC
CAAACTATTTTCCCTCTGCTTTTTTCCTCTAAAATTCTGGTCCTCAATTT
GTTTAAAGTTGTCAtttcatttgttttgtttttgttgcgcACTtgtttta
ctttcgttttttaaaagtatttaatTTCAAGATTCTGTAAAGTACACTGG
AAATATATTAGGAAGCGAAATTAAAAGATAGGGCTGTTGACGATATACTT
GTTATTATAAAACAATTTGGTTCCCATGGAGagatataatttttgtttat
aaaatccACTTATATGTTGAAGCATTATACCTTTTATCCTACGTATGTAT
CATTTATAAATCTTGATTTAATGTCATCCGAAAGttttcaaattcttatt
ttgaaaaaacaccacttttcaatttcaaatcttTACTCTCCAGATACTGT
GATACTTCGATTTTATATAAATGTCCTTCTTCACTTGCATATTCAACCTT
TATCCAATCATTCATCATATCATAATCCTGCACAAATGCAACAAACCAGC
CAGACTTCCAACCTTGATCTTTCTTCCAACGAACAGCTACTTTTGCTCct
atttcaaaaaaagcttCATATTCATCAGAGATTGATGTATTCACTGGCGA
TATGTTGACTGAAGGAGAAATTTCGTTGTCATCTGGGCGAAGGGATGCTT
GAATATCTTCTTTCAAGGGTTTTAAGATGCTAGCCATTGATAACTTTGTA
ATGTTAGGTGGTAACTCAATTTTACTCTCAGTGTAAATGGGATAAGCACT
TGCCATTGCCCTTGGACTTTTACTGCTCAAAATGGATTGTGTTGGGGTTG
AATGTCTCCTTTTCCTTGACGGAGGTAGTACAACATTGAGAGACCTTTGG
TGGCTCATTATGCTTTCTGCAACCTCGATTAATTTTGAGAGTGATAGCTT
CTTTTCTTTGTTGATCACATGTTTTCTACCACTCCTGAGTAGACATACAT
CCAATACTAAttggtctttgtttttttgtgtgGGCAAGTTGTGATGTTGC
AGAATTGTCTTAAGAGAGGCAATAcctaaattaaaaaagaaattaatgaa
aaatattattttaagcgCAAAACGTGTGCTTAGATGTATCAGCAAAAAGA
TTATCAGGAAGTCTCAAAAAGTTTCCATCAATTTTATTGGTACTTCCTTT
TTTATATACAATGGTAAGGAAACAAGAAACACATTTTTATTGTTAAATAG
TATATATCAAAGGGGGggtttaatgatcattaaaaattgaattgttGGTA
AAATTGCTCTTATTTCGAATACTCACCAAGATCTCTTACTTGAGATGATA
GGACTGGGATTTTTGATAAGTCTCCATTGTATTGAAATGAAGTAGACGTT
TTGAACTGCTTGGTATCAATTCCCTCGTGTTGAAGGAGGGCTAAGGCTAT
GTCAACTTTTGTAGTTCCATTGACATTGATTTTATTCTCTGTGCACATCT
TGGCCAgctcattttttgttttcttgtaaagtttttggtttttcagCTCG
TGTCTCATTATTTCTACATTGACATCTTCTTTTGTTTGGgcctttttgtt
ttgaaaaaattgttggGTTTCATCTAAGGGGAGCCtgcaaagaaatcaaa
agagaaTATGATTACACAACTTTTATAGCACATTATTTAAGCTAAAATTT
GAGAACAAACCAGGCTTAACACTAAGCATACTCAAGATTAAGATGCTAAA
AGCTTATgccaatttttctttctttaggaAAACTTGTGGTGAGtgtaaaa
tatctaaaaaatgcAGCTTCACAGTGTAAAAAATTACTACATCAATTTTT
AGACCAGTATTCATTTTACTGCTACTtttaaagccagacgatctcaattg
aacggaatcaacgatcgaaccagtcaaacccaatcgaatgcaatcgaccg
attgaaattcgattgtcgaacacaatcgaatctcaatcgaatattaccgc
aattttcagattcgattgatatccgattgcgttcgattgatgttcgattg
cgttcgatcgtcgattcattgacccccgggttgttcatcgcataatttct
atgggaaatcgaaagtaatttcattcggcttgtgatgtttgagagcttgg
atgttgggaagctgcaagaataaagccagacgatctcaatcgaacggaat
caacgatcgaaccagtcaaacccaatcgaatgcaatcgaccgattgaaat
tcgattgtcgaacacaatcgaatctcaatcgaatattaccgc Run BLAST on NCBI transcript from alignment at scaffold_87:30776..33642- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00073168 ID=TCONS_00073168|Name=TCONS_00073168|organism=Clytia hemisphaerica|type=transcript|length=2867bp|location=Sequence derived from alignment at scaffold_87:30776..33642- (Clytia hemisphaerica)
AAAAAAAACAAGGCTACTGTGTATAAGTCTAGTAAAAGTAAGTCTAAAGA
GCTGACTAATATTTCTTTTTAAAATTCATTTTTCAACTATCCAGAGTTTA
TACTGGTCTTTTTCTGCTCAAGACCAAGAGTGGTGTGTTTCTCCTGGTTT
CTCTGGGAATGAGGGAGATGTATACCCTAATTTTTTCCTCCATCAGAATT
ATTAAAAGGCAAAAAGAAGTTGAGCAACAGCTTCTGGACTATGATTATTT
ATTCTCTAAAAACCATGAAGCGTATAATTTTTTTAAAGATTTTGCCAATT
ATATATATAATAACCATTTCTTTTTCATGCGTAGAGTTAAAATAAAAAAA
TATAACTTCGAACTTTCAAAAGAAACTTTGATATAAATTATATAATGAAC
TTTTTTAAACCGTCACCGTGCATGATAACTAAAGCAAGCATACTGTGTGT
CAAAAGATCTTTAACTCACCTATTTTTAAATGACAAATTGATTTAAAATT
TGATTGAACGAATGTTATAAAAGTACAGCCCTATTTTTTCACTTTGCTGC
CAAACTATTTTCCCTCTGCTTTTTTCCTCTAAAATTCTGGTCCTCAATTT
GTTTAAAGTTGTCATTTCATTTGTTTTGTTTTTGTTGCGCACTTGTTTTA
CTTTCGTTTTTTAAAAGTATTTAATTTCAAGATTCTGTAAAGTACACTGG
AAATATATTAGGAAGCGAAATTAAAAGATAGGGCTGTTGACGATATACTT
GTTATTATAAAACAATTTGGTTCCCATGGAGAGATATAATTTTTGTTTAT
AAAATCCACTTATATGTTGAAGCATTATACCTTTTATCCTACGTATATAT
CATTTATNAGAGATATAATTTTTGTTTCTAAAATCCACTTATATGTTGAA
GCATTATACCTTTTATCCTACGTATCATTTATAAATCTTGATTTAATGTC
ATCCGAAAGTTTTCAAATTCTTATTTTGAAAAAACACCACTTTTCAATTT
CAAATCTTTACTCTCCAGATACTGTGATACTTCGATTTTATATAAATGTC
CTTCTTCACTTGCATATTCAACCTTTATCCAATCATTCATCATATCATAA
TCCTGCACAAATGCAACAAACCAGCCAGACTTCCAACCTTGATCTTTCTT
CCAACGAACAGCTACTTTTGCTCCTATTTCAAAAAAAGCTTCATATTCAT
CAGAGATTGATGTATTCACTGGCGATATGTTGACTGAAGGAGAAATTTCG
TTGTCATCTGGGCGAAGGGATGCTTGAATATCTTCTTTCAAGGGTTTTAA
GATGCTAGCCATTGATAACTTTGTAATGTTAGGTGGTAACTCAATTTTAC
TCTCAGTGTAAATGGGATAAGCACTTGCCATTGCCCTTGGACTTTTACTG
CTCAAAATGGATTGTGTTGGGGTTGAATGTCTCCTTTTCCTTGACGGAGG
TAGTACAACATTGAGAGACCTTTGGTGGCTCATTATGCTTTCTGCAACCT
CGATTAATTTTGAGAGTGATAGCTTCTTTTCTTTGTTGATCACATGTTTT
CTACCACTCCTGAGTAGACATACATCCAATACTAATTGGTCTTTGTTTTT
TTGTGTGGGCAAGTTGTGATGTTGCAGAATTGTCTTAAGAGAGGCAATAC
CTAAATTAAAAAAGAAATTAATGAAAAATATTATTTTAAGCGCAAAACGT
GTGCTTAGATGTATCAGCAAAAAGATTATCAGGAAGTCTCAAAAAGTTTC
CATCAATTTTATTGGTACTTCCTTTTTTATATACAATGGTAAGGAAACAA
GAAACACATTTTTATTGTTAAATAGTATATATCAAAGGGGGGGTTTAATG
ATCATTAAAAATTGAATTGTTGGTAAAATTGCTCTTATTTCGAATACTCA
CCAAGATCTCTTACTTGAGATGATAGGACTGGGATTTTTGATAAGTCTCC
ATTGTATTGAAATGAAGTAGACGTTTTGAACTGCTTGGTATCAATTCCCT
CGTGTTGAAGGAGGGCTAAGGCTATGTCAACTTTTGTAGTTCCATTGACA
TTGATTTTATTCTCTGTGCACATCTTGGCCAGCTCATTTTTTGTTTTCTT
GTAAAGTTTTTGGTTTTTCAGCTCGTGTCTCATTATTTCTACATTGACAT
CTTCTTTTGTTTGGGCCTTTTTGTTTTGAAAAAATTGTTGGGTTTCATCT
AAGGGGAGCCTGCAAAGAAATCAAAAGAGAATATGATTACACAACTTTTA
TAGCACATTATTTAAGCTAAAATTTGAGAACAAACCAGGCTTAACACTAA
GCATACTCAAGATTAAGATGCTAAAAGCTTATGCCAATTTTTCTTTCTTT
AGGAAAACTTGTGGTGAGTGTAAAATATCTAAAAAATGCAGCTTCACAGT
GTAAAAAATTACTACATCAATTTTTAGACCAGTATTCATTTTACTGCTAC
TTTTAAAGCCAGACGATCTCAATTGAACGGAATCAACGATCGAACCAGTC
AAACCCAATCGAATGCAATCGACCGATTGAAATTCGATTGTCGAACACAA
TCGAATCTCAATCGAATATTACCGCAATTTTCAGATTCGATTGATATCCG
ATTGCGTTCGATTGATGTTCGATTGCGTTCGATCGTCGATTCATTGACCC
CCGGGTTGTTCATCGCATAATTTCTATGGGAAATCGAAAGTAATTTCATT
CGGCTTGTGATGTTTGAGAGCTTGGATGTTGGGAAGCTGCAAGAATAAAG
CCAGACGATCTCAATCGAACGGAATCAACGATCGAACCAGTCAAACCCAA
TCGAATGCAATCGACCGATTGAAATTCGATTGTCGAACACAATCGAATCT
CAATCGAATATTACCGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00073168-exon-scaffold_87-1575043694:32797..33642 | TCONS_00073168-exon-scaffold_87-1575043694:32797..33642 | Clytia hemisphaerica | exon |
| TCONS_00073168-exon-scaffold_87-1575043694:30776..32721 | TCONS_00073168-exon-scaffold_87-1575043694:30776..32721 | Clytia hemisphaerica | exon |
| TCONS_00073168-exon-scaffold_87-1510915933:32797..33642 | TCONS_00073168-exon-scaffold_87-1510915933:32797..33642 | Clytia hemisphaerica | exon |
| TCONS_00073168-exon-scaffold_87-1510915933:30776..32721 | TCONS_00073168-exon-scaffold_87-1510915933:30776..32721 | Clytia hemisphaerica | exon |
| TCONS_00073168-exon-scaffold_87-1491911889:32797..33642 | TCONS_00073168-exon-scaffold_87-1491911889:32797..33642 | Clytia hemisphaerica | exon |
| TCONS_00073168-exon-scaffold_87-1491911889:30776..32721 | TCONS_00073168-exon-scaffold_87-1491911889:30776..32721 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_87 | supercontig | scaffold_87:30776..33642 - |
Blast
The following BLAST results are available for this feature:
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