TCONS_00073168 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073168
Unique NameTCONS_00073168
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2792

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073168 ID=TCONS_00073168|Name=TCONS_00073168|organism=Clytia hemisphaerica|type=transcript|length=2792bp
aaaaaaaacaaggCTACTGTGTATAAGTCTAGTAAAAGTAAGTCTAAAGA
GCTGActaatatttctttttaaaattcatttttcaactatCCAGAGTTTA
TACTGGTCTTTTTCTGCTCAAGACCAAGAGTGGTGTGTTTCTCCTGGTTT
CTCTGGGAATGAGGGAGATGTATACCCTAATTTTTTCCTCCATCAGAATT
ATTAAAAGGCAAAAAGAAGTTGAGCAACAGCTTCTGGACTATGATTATTT
ATTCTCTAAAAACCATGAAgcgtataatttttttaaagattttgccAATT
ATATATATAATAACCATTTCTTTTTCATGCGTagagttaaaataaaaaaa
tataacttcgaactttcaaaagaaactttgataTAAATTATATAATGAAC
TTTTTTAAACCGTCACCGTGCATGATAACTAAAGCAAGCATACTGTGTGT
CAAAAGATCTTTAACTCACCTATTtttaaatgacaaattgatttaaaatt
tgaTTGAACGAATGTTATAAAAGTACAGCCCTATTTTTTCACTTTGCTGC
CAAACTATTTTCCCTCTGCTTTTTTCCTCTAAAATTCTGGTCCTCAATTT
GTTTAAAGTTGTCAtttcatttgttttgtttttgttgcgcACTtgtttta
ctttcgttttttaaaagtatttaatTTCAAGATTCTGTAAAGTACACTGG
AAATATATTAGGAAGCGAAATTAAAAGATAGGGCTGTTGACGATATACTT
GTTATTATAAAACAATTTGGTTCCCATGGAGagatataatttttgtttat
aaaatccACTTATATGTTGAAGCATTATACCTTTTATCCTACGTATGTAT
CATTTATAAATCTTGATTTAATGTCATCCGAAAGttttcaaattcttatt
ttgaaaaaacaccacttttcaatttcaaatcttTACTCTCCAGATACTGT
GATACTTCGATTTTATATAAATGTCCTTCTTCACTTGCATATTCAACCTT
TATCCAATCATTCATCATATCATAATCCTGCACAAATGCAACAAACCAGC
CAGACTTCCAACCTTGATCTTTCTTCCAACGAACAGCTACTTTTGCTCct
atttcaaaaaaagcttCATATTCATCAGAGATTGATGTATTCACTGGCGA
TATGTTGACTGAAGGAGAAATTTCGTTGTCATCTGGGCGAAGGGATGCTT
GAATATCTTCTTTCAAGGGTTTTAAGATGCTAGCCATTGATAACTTTGTA
ATGTTAGGTGGTAACTCAATTTTACTCTCAGTGTAAATGGGATAAGCACT
TGCCATTGCCCTTGGACTTTTACTGCTCAAAATGGATTGTGTTGGGGTTG
AATGTCTCCTTTTCCTTGACGGAGGTAGTACAACATTGAGAGACCTTTGG
TGGCTCATTATGCTTTCTGCAACCTCGATTAATTTTGAGAGTGATAGCTT
CTTTTCTTTGTTGATCACATGTTTTCTACCACTCCTGAGTAGACATACAT
CCAATACTAAttggtctttgtttttttgtgtgGGCAAGTTGTGATGTTGC
AGAATTGTCTTAAGAGAGGCAATAcctaaattaaaaaagaaattaatgaa
aaatattattttaagcgCAAAACGTGTGCTTAGATGTATCAGCAAAAAGA
TTATCAGGAAGTCTCAAAAAGTTTCCATCAATTTTATTGGTACTTCCTTT
TTTATATACAATGGTAAGGAAACAAGAAACACATTTTTATTGTTAAATAG
TATATATCAAAGGGGGggtttaatgatcattaaaaattgaattgttGGTA
AAATTGCTCTTATTTCGAATACTCACCAAGATCTCTTACTTGAGATGATA
GGACTGGGATTTTTGATAAGTCTCCATTGTATTGAAATGAAGTAGACGTT
TTGAACTGCTTGGTATCAATTCCCTCGTGTTGAAGGAGGGCTAAGGCTAT
GTCAACTTTTGTAGTTCCATTGACATTGATTTTATTCTCTGTGCACATCT
TGGCCAgctcattttttgttttcttgtaaagtttttggtttttcagCTCG
TGTCTCATTATTTCTACATTGACATCTTCTTTTGTTTGGgcctttttgtt
ttgaaaaaattgttggGTTTCATCTAAGGGGAGCCtgcaaagaaatcaaa
agagaaTATGATTACACAACTTTTATAGCACATTATTTAAGCTAAAATTT
GAGAACAAACCAGGCTTAACACTAAGCATACTCAAGATTAAGATGCTAAA
AGCTTATgccaatttttctttctttaggaAAACTTGTGGTGAGtgtaaaa
tatctaaaaaatgcAGCTTCACAGTGTAAAAAATTACTACATCAATTTTT
AGACCAGTATTCATTTTACTGCTACTtttaaagccagacgatctcaattg
aacggaatcaacgatcgaaccagtcaaacccaatcgaatgcaatcgaccg
attgaaattcgattgtcgaacacaatcgaatctcaatcgaatattaccgc
aattttcagattcgattgatatccgattgcgttcgattgatgttcgattg
cgttcgatcgtcgattcattgacccccgggttgttcatcgcataatttct
atgggaaatcgaaagtaatttcattcggcttgtgatgtttgagagcttgg
atgttgggaagctgcaagaataaagccagacgatctcaatcgaacggaat
caacgatcgaaccagtcaaacccaatcgaatgcaatcgaccgattgaaat
tcgattgtcgaacacaatcgaatctcaatcgaatattaccgc
Run BLAST on NCBI

transcript from alignment at scaffold_87:30776..33642-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073168 ID=TCONS_00073168|Name=TCONS_00073168|organism=Clytia hemisphaerica|type=transcript|length=2867bp|location=Sequence derived from alignment at scaffold_87:30776..33642- (Clytia hemisphaerica)
AAAAAAAACAAGGCTACTGTGTATAAGTCTAGTAAAAGTAAGTCTAAAGA GCTGACTAATATTTCTTTTTAAAATTCATTTTTCAACTATCCAGAGTTTA TACTGGTCTTTTTCTGCTCAAGACCAAGAGTGGTGTGTTTCTCCTGGTTT CTCTGGGAATGAGGGAGATGTATACCCTAATTTTTTCCTCCATCAGAATT ATTAAAAGGCAAAAAGAAGTTGAGCAACAGCTTCTGGACTATGATTATTT ATTCTCTAAAAACCATGAAGCGTATAATTTTTTTAAAGATTTTGCCAATT ATATATATAATAACCATTTCTTTTTCATGCGTAGAGTTAAAATAAAAAAA TATAACTTCGAACTTTCAAAAGAAACTTTGATATAAATTATATAATGAAC TTTTTTAAACCGTCACCGTGCATGATAACTAAAGCAAGCATACTGTGTGT CAAAAGATCTTTAACTCACCTATTTTTAAATGACAAATTGATTTAAAATT TGATTGAACGAATGTTATAAAAGTACAGCCCTATTTTTTCACTTTGCTGC CAAACTATTTTCCCTCTGCTTTTTTCCTCTAAAATTCTGGTCCTCAATTT GTTTAAAGTTGTCATTTCATTTGTTTTGTTTTTGTTGCGCACTTGTTTTA CTTTCGTTTTTTAAAAGTATTTAATTTCAAGATTCTGTAAAGTACACTGG AAATATATTAGGAAGCGAAATTAAAAGATAGGGCTGTTGACGATATACTT GTTATTATAAAACAATTTGGTTCCCATGGAGAGATATAATTTTTGTTTAT AAAATCCACTTATATGTTGAAGCATTATACCTTTTATCCTACGTATATAT CATTTATNAGAGATATAATTTTTGTTTCTAAAATCCACTTATATGTTGAA GCATTATACCTTTTATCCTACGTATCATTTATAAATCTTGATTTAATGTC ATCCGAAAGTTTTCAAATTCTTATTTTGAAAAAACACCACTTTTCAATTT CAAATCTTTACTCTCCAGATACTGTGATACTTCGATTTTATATAAATGTC CTTCTTCACTTGCATATTCAACCTTTATCCAATCATTCATCATATCATAA TCCTGCACAAATGCAACAAACCAGCCAGACTTCCAACCTTGATCTTTCTT CCAACGAACAGCTACTTTTGCTCCTATTTCAAAAAAAGCTTCATATTCAT CAGAGATTGATGTATTCACTGGCGATATGTTGACTGAAGGAGAAATTTCG TTGTCATCTGGGCGAAGGGATGCTTGAATATCTTCTTTCAAGGGTTTTAA GATGCTAGCCATTGATAACTTTGTAATGTTAGGTGGTAACTCAATTTTAC TCTCAGTGTAAATGGGATAAGCACTTGCCATTGCCCTTGGACTTTTACTG CTCAAAATGGATTGTGTTGGGGTTGAATGTCTCCTTTTCCTTGACGGAGG TAGTACAACATTGAGAGACCTTTGGTGGCTCATTATGCTTTCTGCAACCT CGATTAATTTTGAGAGTGATAGCTTCTTTTCTTTGTTGATCACATGTTTT CTACCACTCCTGAGTAGACATACATCCAATACTAATTGGTCTTTGTTTTT TTGTGTGGGCAAGTTGTGATGTTGCAGAATTGTCTTAAGAGAGGCAATAC CTAAATTAAAAAAGAAATTAATGAAAAATATTATTTTAAGCGCAAAACGT GTGCTTAGATGTATCAGCAAAAAGATTATCAGGAAGTCTCAAAAAGTTTC CATCAATTTTATTGGTACTTCCTTTTTTATATACAATGGTAAGGAAACAA GAAACACATTTTTATTGTTAAATAGTATATATCAAAGGGGGGGTTTAATG ATCATTAAAAATTGAATTGTTGGTAAAATTGCTCTTATTTCGAATACTCA CCAAGATCTCTTACTTGAGATGATAGGACTGGGATTTTTGATAAGTCTCC ATTGTATTGAAATGAAGTAGACGTTTTGAACTGCTTGGTATCAATTCCCT CGTGTTGAAGGAGGGCTAAGGCTATGTCAACTTTTGTAGTTCCATTGACA TTGATTTTATTCTCTGTGCACATCTTGGCCAGCTCATTTTTTGTTTTCTT GTAAAGTTTTTGGTTTTTCAGCTCGTGTCTCATTATTTCTACATTGACAT CTTCTTTTGTTTGGGCCTTTTTGTTTTGAAAAAATTGTTGGGTTTCATCT AAGGGGAGCCTGCAAAGAAATCAAAAGAGAATATGATTACACAACTTTTA TAGCACATTATTTAAGCTAAAATTTGAGAACAAACCAGGCTTAACACTAA GCATACTCAAGATTAAGATGCTAAAAGCTTATGCCAATTTTTCTTTCTTT AGGAAAACTTGTGGTGAGTGTAAAATATCTAAAAAATGCAGCTTCACAGT GTAAAAAATTACTACATCAATTTTTAGACCAGTATTCATTTTACTGCTAC TTTTAAAGCCAGACGATCTCAATTGAACGGAATCAACGATCGAACCAGTC AAACCCAATCGAATGCAATCGACCGATTGAAATTCGATTGTCGAACACAA TCGAATCTCAATCGAATATTACCGCAATTTTCAGATTCGATTGATATCCG ATTGCGTTCGATTGATGTTCGATTGCGTTCGATCGTCGATTCATTGACCC CCGGGTTGTTCATCGCATAATTTCTATGGGAAATCGAAAGTAATTTCATT CGGCTTGTGATGTTTGAGAGCTTGGATGTTGGGAAGCTGCAAGAATAAAG CCAGACGATCTCAATCGAACGGAATCAACGATCGAACCAGTCAAACCCAA TCGAATGCAATCGACCGATTGAAATTCGATTGTCGAACACAATCGAATCT CAATCGAATATTACCGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045380XLOC_045380Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073168-exon-scaffold_87-1575043694:32797..33642TCONS_00073168-exon-scaffold_87-1575043694:32797..33642Clytia hemisphaericaexon
TCONS_00073168-exon-scaffold_87-1575043694:30776..32721TCONS_00073168-exon-scaffold_87-1575043694:30776..32721Clytia hemisphaericaexon
TCONS_00073168-exon-scaffold_87-1510915933:32797..33642TCONS_00073168-exon-scaffold_87-1510915933:32797..33642Clytia hemisphaericaexon
TCONS_00073168-exon-scaffold_87-1510915933:30776..32721TCONS_00073168-exon-scaffold_87-1510915933:30776..32721Clytia hemisphaericaexon
TCONS_00073168-exon-scaffold_87-1491911889:32797..33642TCONS_00073168-exon-scaffold_87-1491911889:32797..33642Clytia hemisphaericaexon
TCONS_00073168-exon-scaffold_87-1491911889:30776..32721TCONS_00073168-exon-scaffold_87-1491911889:30776..32721Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_87supercontigscaffold_87:30776..33642 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.62637 0.500497 1.23825 1.55326 1.51757 1.11085 1.19218 1.45805 0.757676 0.848689 0.846135 0.938811 0.867435 1.10502 0.6053 0.830847 0.782012 0.593402 0.812995 0.815891 0.7536 0.653959 0.291923 0.514859 1.43855 1.24159 1.41351 0.894662 0.534004 0.646238
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073168 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top