TCONS_00073161 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073161
Unique NameTCONS_00073161
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length905

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073161 ID=TCONS_00073161|Name=TCONS_00073161|organism=Clytia hemisphaerica|type=transcript|length=905bp
GTAGAAATAATGAGACACGAGctgaaaaaccaaaaactttacaagaaaac
aaaaaatgagcTGGCCAAGATGTGCACAGAGAATAAAATCAATGTCAATG
GAACTACAAAAGTTGACATAGCCTTAGCCCTCCTTCAACACGAGGGAATT
GATACCAAGCAGTTCAAAACGTCTACTTCATTTCAATACAATGGAGACTT
ATCAAAAATCCCAGTCCTATCATCTCAAGTAAGAGATCTTGgTATTGCCT
CTCTTAAGACAATTCTGCAACATCACAACTTGCCcacacaaaaaaacaaa
gaccaaTTAGTATTGGATGTATGTCTACTCAGGAGTGGTAGAAAACATGT
GATCAACAAAGAAAAGAAGCTATCACTCTCAAAATTAATCGAGGTTGCAG
AAAGCATAATGAGCCACCAAAGGTCTCTCAATGTTGTACTACCTCCGTCA
AGGAAAAGGAGACATTCAACCCCAACACAATCCATTTTGAGCAGTAAAAG
TCCAAGGGCAATGGCAAGTGCTTATCCCATTTACACTGAGAGTAAAATTG
AGTTACCACCTAACATTACAAAGTTATCAATGGCTAGCATCTTAAAACCC
TTGAAAGAAGATATTCAAGCATCCCTTCGCCCAGATGACAACGAAATTTC
TCCTTCAGTCAACATATCGCCAGTGAATACATCAATCTCTGATGAATATG
aagctttttttgaaatagGAGCAAAAGTAGCTGTTCGTTGGAAGAAAGAT
CAAGGTTGGAAGTCTGGCTGGTTTGTTGCATTTGTGCAGGATTATGATAT
GATGAATGATTGGATAAAGGTTGAATATGCAAGTGAAGAAGGACATTTAT
ATAAAATCGAAGTATCACAGTATCTGGAGAGTAaagatttgaaattgaaa
agtgg
Run BLAST on NCBI

protein sequence of TCONS_00073161-protein

>TCONS_00073161-protein ID=TCONS_00073161-protein|Name=TCONS_00073161-protein|organism=Clytia hemisphaerica|type=polypeptide|length=301bp
VEIMRHELKNQKLYKKTKNELAKMCTENKINVNGTTKVDIALALLQHEGI
DTKQFKTSTSFQYNGDLSKIPVLSSQVRDLGIASLKTILQHHNLPTQKNK
DQLVLDVCLLRSGRKHVINKEKKLSLSKLIEVAESIMSHQRSLNVVLPPS
RKRRHSTPTQSILSSKSPRAMASAYPIYTESKIELPPNITKLSMASILKP
LKEDIQASLRPDDNEISPSVNISPVNTSISDEYEAFFEIGAKVAVRWKKD
QGWKSGWFVAFVQDYDMMNDWIKVEYASEEGHLYKIEVSQYLESKDLKLK
S
Run BLAST on NCBI

transcript from alignment at scaffold_87:31501..32656+

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073161 ID=TCONS_00073161|Name=TCONS_00073161|organism=Clytia hemisphaerica|type=transcript|length=1156bp|location=Sequence derived from alignment at scaffold_87:31501..32656+ (Clytia hemisphaerica)
GTAGAAATAATGAGACACGAGctgaaaaaccaaaaactttacaagaaaac aaaaaatgagcTGGCCAAGATGTGCACAGAGAATAAAATCAATGTCAATG GAACTACAAAAGTTGACATAGCCTTAGCCCTCCTTCAACACGAGGGAATT GATACCAAGCAGTTCAAAACGTCTACTTCATTTCAATACAATGGAGACTT ATCAAAAATCCCAGTCCTATCATCTCAAGTAAGAGATCTTGGTGAGTATT CGAAATAAGAGCAATTTTACCaacaattcaatttttaatgatcattaaac cCCCCCTTTGATATATACTATTTAACAATAAAAATGTGTTTCTTGTTTCC TTACCATTGTATATAAAAAAGGAAGTACCAATAAAATTGATGGAAACTTT TTGAGACTTCCTGATAATCTTTTTGCTGATACATCTAAGCACACGTTTTG cgcttaaaataatatttttcattaatttcttttttaatttaggTATTGCC TCTCTTAAGACAATTCTGCAACATCACAACTTGCCcacacaaaaaaacaa agaccaaTTAGTATTGGATGTATGTCTACTCAGGAGTGGTAGAAAACATG TGATCAACAAAGAAAAGAAGCTATCACTCTCAAAATTAATCGAGGTTGCA GAAAGCATAATGAGCCACCAAAGGTCTCTCAATGTTGTACTACCTCCGTC AAGGAAAAGGAGACATTCAACCCCAACACAATCCATTTTGAGCAGTAAAA GTCCAAGGGCAATGGCAAGTGCTTATCCCATTTACACTGAGAGTAAAATT GAGTTACCACCTAACATTACAAAGTTATCAATGGCTAGCATCTTAAAACC CTTGAAAGAAGATATTCAAGCATCCCTTCGCCCAGATGACAACGAAATTT CTCCTTCAGTCAACATATCGCCAGTGAATACATCAATCTCTGATGAATAT GaagctttttttgaaatagGAGCAAAAGTAGCTGTTCGTTGGAAGAAAGA TCAAGGTTGGAAGTCTGGCTGGTTTGTTGCATTTGTGCAGGATTATGATA TGATGAATGATTGGATAAAGGTTGAATATGCAAGTGAAGAAGGACATTTA TATAAAATCGAAGTATCACAGTATCTGGAGAGTAaagatttgaaattgaa aagtgg

Coding sequence (CDS) from alignment at scaffold_87:31501..32656+

>TCONS_00073161 ID=TCONS_00073161|Name=TCONS_00073161|organism=Clytia hemisphaerica|type=CDS|length=1806bp|location=Sequence derived from alignment at scaffold_87:31501..32656+ (Clytia hemisphaerica)
GTAGAAATAATGAGACACGAGctgaaaaaccaaaaactttacaagaaaac
aaaaaatgagcTGGCCAAGATGTGCACAGAGAATAAAATCAATGTCAATG
GAACTACAAAAGTTGACATAGCCTTAGCCCTCCTTCAACACGAGGGAATT
GATACCAAGCAGTTCAAAACGTCTACTTCATTTCAATACAATGGAGACTT
ATCAAAAATCCCAGTCCTATCATCTCAAGTAAGAGATCTTGgTATTGCCT
CTCTTAAGACAATTCTGCAACATCACAACTTGCCcacacaaaaaaacaaa
gaccaaTTAGTATTGGATGTATGTCTACTCAGGAGTGGTAGAAAACATGT
GATCAACAAAGAAAAGAAGCTATCACTCTCAAAATTAATCGAGGTTGCAG
AAAGCATAATGAGCCACCAAAGGTCTCTCAATGTTGTACTACCTCCGTCA
AGGAAAAGGAGACATTCAACCCCAACACAATCCATTTTGAGCAGTAAAAG
TCCAAGGGCAATGGCAAGTGCTTATCCCATTTACACTGAGAGTAAAATTG
AGTTACCACCTAACATTACAAAGTTATCAATGGCTAGCATCTTAAAACCC
TTGAAAGAAGATATTCAAGCATCCCTTCGCCCAGATGACAACGAAATTTC
TCCTTCAGTCAACATATCGCCAGTGAATACATCAATCTCTGATGAATATG
aagctttttttgaaatagGAGCAAAAGTAGCTGTTCGTTGGAAGAAAGAT
CAAGGTTGGAAGTCTGGCTGGTTTGTTGCATTTGTGCAGGATTATGATAT
GATGAATGATTGGATAAAGGTTGAATATGCAAGTGAAGAAGGACATTTAT
ATAAAATCGAAGTATCACAGTATCTGGAGAGTAaagatttgaaattgaaa
agtGTAGAAATAATGAGACACGAGctgaaaaaccaaaaactttacaagaa
aacaaaaaatgagcTGGCCAAGATGTGCACAGAGAATAAAATCAATGTCA
ATGGAACTACAAAAGTTGACATAGCCTTAGCCCTCCTTCAACACGAGGGA
ATTGATACCAAGCAGTTCAAAACGTCTACTTCATTTCAATACAATGGAGA
CTTATCAAAAATCCCAGTCCTATCATCTCAAGTAAGAGATCTTGgTATTG
CCTCTCTTAAGACAATTCTGCAACATCACAACTTGCCcacacaaaaaaac
aaagaccaaTTAGTATTGGATGTATGTCTACTCAGGAGTGGTAGAAAACA
TGTGATCAACAAAGAAAAGAAGCTATCACTCTCAAAATTAATCGAGGTTG
CAGAAAGCATAATGAGCCACCAAAGGTCTCTCAATGTTGTACTACCTCCG
TCAAGGAAAAGGAGACATTCAACCCCAACACAATCCATTTTGAGCAGTAA
AAGTCCAAGGGCAATGGCAAGTGCTTATCCCATTTACACTGAGAGTAAAA
TTGAGTTACCACCTAACATTACAAAGTTATCAATGGCTAGCATCTTAAAA
CCCTTGAAAGAAGATATTCAAGCATCCCTTCGCCCAGATGACAACGAAAT
TTCTCCTTCAGTCAACATATCGCCAGTGAATACATCAATCTCTGATGAAT
ATGaagctttttttgaaatagGAGCAAAAGTAGCTGTTCGTTGGAAGAAA
GATCAAGGTTGGAAGTCTGGCTGGTTTGTTGCATTTGTGCAGGATTATGA
TATGATGAATGATTGGATAAAGGTTGAATATGCAAGTGAAGAAGGACATT
TATATAAAATCGAAGTATCACAGTATCTGGAGAGTAaagatttgaaattg
aaaagt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045377XLOC_045377Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073161-proteinTCONS_00073161-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073161-exon-scaffold_87-1491911889:31501..31741TCONS_00073161-exon-scaffold_87-1491911889:31501..31741Clytia hemisphaericaexon
TCONS_00073161-exon-scaffold_87-1510915933:31501..31741TCONS_00073161-exon-scaffold_87-1510915933:31501..31741Clytia hemisphaericaexon
TCONS_00073161-exon-scaffold_87-1575043694:31501..31741TCONS_00073161-exon-scaffold_87-1575043694:31501..31741Clytia hemisphaericaexon
TCONS_00073161-exon-scaffold_87-1491911889:31993..32656TCONS_00073161-exon-scaffold_87-1491911889:31993..32656Clytia hemisphaericaexon
TCONS_00073161-exon-scaffold_87-1510915933:31993..32656TCONS_00073161-exon-scaffold_87-1510915933:31993..32656Clytia hemisphaericaexon
TCONS_00073161-exon-scaffold_87-1575043694:31993..32656TCONS_00073161-exon-scaffold_87-1575043694:31993..32656Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_87supercontigscaffold_87:31501..32656 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0 0 0 0 0 0 0 0 0 0.205657 0.347525 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003034SAP_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073161 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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