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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073161 ID=TCONS_00073161|Name=TCONS_00073161|organism=Clytia hemisphaerica|type=transcript|length=905bp
GTAGAAATAATGAGACACGAGctgaaaaaccaaaaactttacaagaaaac
aaaaaatgagcTGGCCAAGATGTGCACAGAGAATAAAATCAATGTCAATG
GAACTACAAAAGTTGACATAGCCTTAGCCCTCCTTCAACACGAGGGAATT
GATACCAAGCAGTTCAAAACGTCTACTTCATTTCAATACAATGGAGACTT
ATCAAAAATCCCAGTCCTATCATCTCAAGTAAGAGATCTTGgTATTGCCT
CTCTTAAGACAATTCTGCAACATCACAACTTGCCcacacaaaaaaacaaa
gaccaaTTAGTATTGGATGTATGTCTACTCAGGAGTGGTAGAAAACATGT
GATCAACAAAGAAAAGAAGCTATCACTCTCAAAATTAATCGAGGTTGCAG
AAAGCATAATGAGCCACCAAAGGTCTCTCAATGTTGTACTACCTCCGTCA
AGGAAAAGGAGACATTCAACCCCAACACAATCCATTTTGAGCAGTAAAAG
TCCAAGGGCAATGGCAAGTGCTTATCCCATTTACACTGAGAGTAAAATTG
AGTTACCACCTAACATTACAAAGTTATCAATGGCTAGCATCTTAAAACCC
TTGAAAGAAGATATTCAAGCATCCCTTCGCCCAGATGACAACGAAATTTC
TCCTTCAGTCAACATATCGCCAGTGAATACATCAATCTCTGATGAATATG
aagctttttttgaaatagGAGCAAAAGTAGCTGTTCGTTGGAAGAAAGAT
CAAGGTTGGAAGTCTGGCTGGTTTGTTGCATTTGTGCAGGATTATGATAT
GATGAATGATTGGATAAAGGTTGAATATGCAAGTGAAGAAGGACATTTAT
ATAAAATCGAAGTATCACAGTATCTGGAGAGTAaagatttgaaattgaaa
agtgg Run BLAST on NCBI protein sequence of TCONS_00073161-protein >TCONS_00073161-protein ID=TCONS_00073161-protein|Name=TCONS_00073161-protein|organism=Clytia hemisphaerica|type=polypeptide|length=301bp
VEIMRHELKNQKLYKKTKNELAKMCTENKINVNGTTKVDIALALLQHEGI
DTKQFKTSTSFQYNGDLSKIPVLSSQVRDLGIASLKTILQHHNLPTQKNK
DQLVLDVCLLRSGRKHVINKEKKLSLSKLIEVAESIMSHQRSLNVVLPPS
RKRRHSTPTQSILSSKSPRAMASAYPIYTESKIELPPNITKLSMASILKP
LKEDIQASLRPDDNEISPSVNISPVNTSISDEYEAFFEIGAKVAVRWKKD
QGWKSGWFVAFVQDYDMMNDWIKVEYASEEGHLYKIEVSQYLESKDLKLK
S Run BLAST on NCBI transcript from alignment at scaffold_87:31501..32656+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00073161 ID=TCONS_00073161|Name=TCONS_00073161|organism=Clytia hemisphaerica|type=transcript|length=1156bp|location=Sequence derived from alignment at scaffold_87:31501..32656+ (Clytia hemisphaerica)
GTAGAAATAATGAGACACGAGctgaaaaaccaaaaactttacaagaaaac
aaaaaatgagcTGGCCAAGATGTGCACAGAGAATAAAATCAATGTCAATG
GAACTACAAAAGTTGACATAGCCTTAGCCCTCCTTCAACACGAGGGAATT
GATACCAAGCAGTTCAAAACGTCTACTTCATTTCAATACAATGGAGACTT
ATCAAAAATCCCAGTCCTATCATCTCAAGTAAGAGATCTTGGTGAGTATT
CGAAATAAGAGCAATTTTACCaacaattcaatttttaatgatcattaaac
cCCCCCTTTGATATATACTATTTAACAATAAAAATGTGTTTCTTGTTTCC
TTACCATTGTATATAAAAAAGGAAGTACCAATAAAATTGATGGAAACTTT
TTGAGACTTCCTGATAATCTTTTTGCTGATACATCTAAGCACACGTTTTG
cgcttaaaataatatttttcattaatttcttttttaatttaggTATTGCC
TCTCTTAAGACAATTCTGCAACATCACAACTTGCCcacacaaaaaaacaa
agaccaaTTAGTATTGGATGTATGTCTACTCAGGAGTGGTAGAAAACATG
TGATCAACAAAGAAAAGAAGCTATCACTCTCAAAATTAATCGAGGTTGCA
GAAAGCATAATGAGCCACCAAAGGTCTCTCAATGTTGTACTACCTCCGTC
AAGGAAAAGGAGACATTCAACCCCAACACAATCCATTTTGAGCAGTAAAA
GTCCAAGGGCAATGGCAAGTGCTTATCCCATTTACACTGAGAGTAAAATT
GAGTTACCACCTAACATTACAAAGTTATCAATGGCTAGCATCTTAAAACC
CTTGAAAGAAGATATTCAAGCATCCCTTCGCCCAGATGACAACGAAATTT
CTCCTTCAGTCAACATATCGCCAGTGAATACATCAATCTCTGATGAATAT
GaagctttttttgaaatagGAGCAAAAGTAGCTGTTCGTTGGAAGAAAGA
TCAAGGTTGGAAGTCTGGCTGGTTTGTTGCATTTGTGCAGGATTATGATA
TGATGAATGATTGGATAAAGGTTGAATATGCAAGTGAAGAAGGACATTTA
TATAAAATCGAAGTATCACAGTATCTGGAGAGTAaagatttgaaattgaa
aagtgg Coding sequence (CDS) from alignment at scaffold_87:31501..32656+ >TCONS_00073161 ID=TCONS_00073161|Name=TCONS_00073161|organism=Clytia hemisphaerica|type=CDS|length=1806bp|location=Sequence derived from alignment at scaffold_87:31501..32656+ (Clytia hemisphaerica)
GTAGAAATAATGAGACACGAGctgaaaaaccaaaaactttacaagaaaac
aaaaaatgagcTGGCCAAGATGTGCACAGAGAATAAAATCAATGTCAATG
GAACTACAAAAGTTGACATAGCCTTAGCCCTCCTTCAACACGAGGGAATT
GATACCAAGCAGTTCAAAACGTCTACTTCATTTCAATACAATGGAGACTT
ATCAAAAATCCCAGTCCTATCATCTCAAGTAAGAGATCTTGgTATTGCCT
CTCTTAAGACAATTCTGCAACATCACAACTTGCCcacacaaaaaaacaaa
gaccaaTTAGTATTGGATGTATGTCTACTCAGGAGTGGTAGAAAACATGT
GATCAACAAAGAAAAGAAGCTATCACTCTCAAAATTAATCGAGGTTGCAG
AAAGCATAATGAGCCACCAAAGGTCTCTCAATGTTGTACTACCTCCGTCA
AGGAAAAGGAGACATTCAACCCCAACACAATCCATTTTGAGCAGTAAAAG
TCCAAGGGCAATGGCAAGTGCTTATCCCATTTACACTGAGAGTAAAATTG
AGTTACCACCTAACATTACAAAGTTATCAATGGCTAGCATCTTAAAACCC
TTGAAAGAAGATATTCAAGCATCCCTTCGCCCAGATGACAACGAAATTTC
TCCTTCAGTCAACATATCGCCAGTGAATACATCAATCTCTGATGAATATG
aagctttttttgaaatagGAGCAAAAGTAGCTGTTCGTTGGAAGAAAGAT
CAAGGTTGGAAGTCTGGCTGGTTTGTTGCATTTGTGCAGGATTATGATAT
GATGAATGATTGGATAAAGGTTGAATATGCAAGTGAAGAAGGACATTTAT
ATAAAATCGAAGTATCACAGTATCTGGAGAGTAaagatttgaaattgaaa
agtGTAGAAATAATGAGACACGAGctgaaaaaccaaaaactttacaagaa
aacaaaaaatgagcTGGCCAAGATGTGCACAGAGAATAAAATCAATGTCA
ATGGAACTACAAAAGTTGACATAGCCTTAGCCCTCCTTCAACACGAGGGA
ATTGATACCAAGCAGTTCAAAACGTCTACTTCATTTCAATACAATGGAGA
CTTATCAAAAATCCCAGTCCTATCATCTCAAGTAAGAGATCTTGgTATTG
CCTCTCTTAAGACAATTCTGCAACATCACAACTTGCCcacacaaaaaaac
aaagaccaaTTAGTATTGGATGTATGTCTACTCAGGAGTGGTAGAAAACA
TGTGATCAACAAAGAAAAGAAGCTATCACTCTCAAAATTAATCGAGGTTG
CAGAAAGCATAATGAGCCACCAAAGGTCTCTCAATGTTGTACTACCTCCG
TCAAGGAAAAGGAGACATTCAACCCCAACACAATCCATTTTGAGCAGTAA
AAGTCCAAGGGCAATGGCAAGTGCTTATCCCATTTACACTGAGAGTAAAA
TTGAGTTACCACCTAACATTACAAAGTTATCAATGGCTAGCATCTTAAAA
CCCTTGAAAGAAGATATTCAAGCATCCCTTCGCCCAGATGACAACGAAAT
TTCTCCTTCAGTCAACATATCGCCAGTGAATACATCAATCTCTGATGAAT
ATGaagctttttttgaaatagGAGCAAAAGTAGCTGTTCGTTGGAAGAAA
GATCAAGGTTGGAAGTCTGGCTGGTTTGTTGCATTTGTGCAGGATTATGA
TATGATGAATGATTGGATAAAGGTTGAATATGCAAGTGAAGAAGGACATT
TATATAAAATCGAAGTATCACAGTATCTGGAGAGTAaagatttgaaattg
aaaagt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00073161-exon-scaffold_87-1491911889:31501..31741 | TCONS_00073161-exon-scaffold_87-1491911889:31501..31741 | Clytia hemisphaerica | exon |
| TCONS_00073161-exon-scaffold_87-1510915933:31501..31741 | TCONS_00073161-exon-scaffold_87-1510915933:31501..31741 | Clytia hemisphaerica | exon |
| TCONS_00073161-exon-scaffold_87-1575043694:31501..31741 | TCONS_00073161-exon-scaffold_87-1575043694:31501..31741 | Clytia hemisphaerica | exon |
| TCONS_00073161-exon-scaffold_87-1491911889:31993..32656 | TCONS_00073161-exon-scaffold_87-1491911889:31993..32656 | Clytia hemisphaerica | exon |
| TCONS_00073161-exon-scaffold_87-1510915933:31993..32656 | TCONS_00073161-exon-scaffold_87-1510915933:31993..32656 | Clytia hemisphaerica | exon |
| TCONS_00073161-exon-scaffold_87-1575043694:31993..32656 | TCONS_00073161-exon-scaffold_87-1575043694:31993..32656 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_87 | supercontig | scaffold_87:31501..32656 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR003034 | SAP_dom |
Blast
The following BLAST results are available for this feature:
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