TCONS_00073160 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073160
Unique NameTCONS_00073160
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length797

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073160 ID=TCONS_00073160|Name=TCONS_00073160|organism=Clytia hemisphaerica|type=transcript|length=797bp
GACACAAAAAGAGACAAAGATTTACTAAAGGGGGTACTTGCTGAGGTTAC
AAGTATCCGTTTTGCGTCACATATACAGGGGAAACAGAGTAGATCAGCAG
TtagaaattgcaaaatgtcattgCGGGCCAATGTCAACAAATTCAGAAAA
TTGGAATCAGCTGTATTGAAGGAAACGAACCCTAAAGTAAAAAACCAGCA
CGCATATCAGCAAAGAAGGCTGACACAATTAAAGTTCAAAGAAATGAAGG
TTATTGCTGAAGGACGAGGAGCCCAATTGAAGTCTGACAAATTCCCAGAA
TTGGCAATGGTCCTAGAAGGCGTATTTGGTGCCAATGGTATGGAGAGCCA
TCCAAGACTATCTGATGATGTGCTTTACAAAGCCAAGAGTAATTCCATTA
TAATGGCCAAGGCTCGAGAAGTCCTGCTTGCACTGGCACCTAACAGCTTT
AACATTTCCCTATCATGTTGCTACAACTACACCCAAAATTACAAAGCAGG
AACCCATCAAGCAAAACGACATCACGATGGAAAAAACATCAATGCCCGGA
TTTCTTTGCACGCACCCCCAAGGATAGGTGTTGAAAAACCATCCCCAAAC
CTTCATTGGACATCATCCAATATAAATACTATAATTGCATCATCACCAAA
TGAAACTATCTTTGATTCAAAAGACGCTAAAAGTATTGTTTGTGCTGACA
TCTCACCAGTCCAAAGGATTggcaaaacttggaaaaaaagagaagGAACT
CTACTTGATCATGAATGGGATCAGAGCAGAAGAAACGCTGTCACTCC
Run BLAST on NCBI

protein sequence of TCONS_00073160-protein

>TCONS_00073160-protein ID=TCONS_00073160-protein|Name=TCONS_00073160-protein|organism=Clytia hemisphaerica|type=polypeptide|length=265bp
DTKRDKDLLKGVLAEVTSIRFASHIQGKQSRSAVRNCKMSLRANVNKFRK
LESAVLKETNPKVKNQHAYQQRRLTQLKFKEMKVIAEGRGAQLKSDKFPE
LAMVLEGVFGANGMESHPRLSDDVLYKAKSNSIIMAKAREVLLALAPNSF
NISLSCCYNYTQNYKAGTHQAKRHHDGKNINARISLHAPPRIGVEKPSPN
LHWTSSNINTIIASSPNETIFDSKDAKSIVCADISPVQRIGKTWKKREGT
LLDHEWDQSRRNAVT
Run BLAST on NCBI

transcript from alignment at scaffold_87:26507..28572+

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073160 ID=TCONS_00073160|Name=TCONS_00073160|organism=Clytia hemisphaerica|type=transcript|length=2066bp|location=Sequence derived from alignment at scaffold_87:26507..28572+ (Clytia hemisphaerica)
GACACAAAAAGAGACAAAGATTTACTAAAGGGGGTACTTGCTGAGGTTAC AAGTATCCGTTTTGCGTCACATATACAGGGGAAACAGAGTAGATCAGCAG TtagaaattgcaaaatgtcattgCGGGCCAATGTCAACAAATTCAGAAAA TTGGAATCAGCTGTATTGAAGGAAACGAACCCTAAAGTAAAAAACCAGCA CGCATATCAGCAAAGAAGGCTGACACAATTAAAGTTCAAAGAAATGAAGG TTATTGCTGAAGGACGAGGAGCCCAATTGAAGTCTGACAAATTCCCAGAA TTGGCAATGGTCCTAGAAGGCGTATTTGGTGCCAATGGTATGGAGAGCCA TCCAAGACTATCTGATGATGTGCTTTACAAAGCCAAGAGTAATTCCATTA TAATGGCCAAGGCTCGAGAAGTCCTGCTTGCACTGGCACCTAACAGCTTT AACATTTCCCTATCATGTTGCTACAACTACACCCAAAATTACAAAGCAGG AACCCATCAAGCAAAACGACATCACGATGGAAAAAACATCAATGCCCGGA TTTCTTTGCACGCACCCCCAAGGATAGGTGTTGAAAAACCATCCCCAAAC CTTCATTGGACATCATCCAATATAAATACTATAATTGCATCATCACCAAA TGAAACTATCTTTGATTCAAAAGACGCTAAAAGTATTGTTTGTGCTGACA TCTCACCAGTCCAAAGGATTggcaaaacttggaaaaaaagagaaggtaaa attttttcattgtgcTCTCCTCTTTCAGTTAGTGCCAATAGGAAATtgag ctttcagaaaaaaacaaatatcaatcATCTACAGGAtatatttgcaacaa caaggatgagagttacatgaatcaagttcaagatcccaaaACAATTAATC AAAACTTGAAAAGAGACAAAATTGCAGCAGCCGGAATCAACACACTagat tttgtcattcaattcctgagacagTGCTTCCATTTTTAGgtcttgtttat acgctaaagtaaaagtaattccgtacatgtaaatgggtcagtgtttgagg tctggcaaaatttccaggaaatagcctatccggtgCGTTCTGTCTAGATC CTTTTCTTAGGAAGTTGTGCTTCAAAttatagttttcaaggttggcttgg ctcaaactttttcatctatggctcaaattttaggtaatttctcatagttt ttgaaaatgttaaactCATTTAGAAAGCGTcggtatattttttcatgatt ccCTTTAGAAGTTCTgtggcaaatttttttgcttgcgagtcaagcAAATG ATATAGTGCTCTCTTAAAATCTTTAATACGCATTTTGGCTGGAGGCTAGT GTGACTGATTGTCCTTATAGTTTTATAATGCATTCAAGGTTTCCatgatt ttcataaaaaatatatttgtcaTTGGATTCAAAATGATCCTAATGATTTT CTTTGTTGGGTTTCTTCAAAACATAAATTACATCATAGTTCAAACCCTGC TTTCTTAAGAAGGGGGATGACaacttccaaaaaaaacaaagaagggGATT TGGAAATCCTCCTCAAAAAGGGGGGATAACAAGAAAGGGGGATCCCTTTG GAAGGTTGATCGTTATgaagtcttctttttcttaccATGATTGAGTTTTT CTctatatttttgtaatttaaatgagaaaatttgCTCAATTTACAAAGTA CTTTCCTGTTTGCAGGCAATTTGAGTCTGGTATTTGAGTGTTACACAGTG ttattttccaaaatcaaaaagccCAAGAACCTTaaaggaaaaagattttt aaaagttgaGGGGAAGTCTAGagggggatcatttaagaaggggatCAGAC TCCCTCTTGCACAAtgcatcaaaaaactttttatcttTAGATCTAATcag atttgaaaaagaaatgattCAAAATTTGCAGAAATGAAATTCTGCAACag ttgaaaaaatattgaacccCCTAAATGGATACAAATAATTGTATTGTGCT TTGATCATTTTTAGGAACTCTACTTGATCATGAATGGGATCAGAGCAGAA GAAACGCTGTCACTCC

Coding sequence (CDS) from alignment at scaffold_87:26507..28572+

>TCONS_00073160 ID=TCONS_00073160|Name=TCONS_00073160|organism=Clytia hemisphaerica|type=CDS|length=1590bp|location=Sequence derived from alignment at scaffold_87:26507..28572+ (Clytia hemisphaerica)
GACACAAAAAGAGACAAAGATTTACTAAAGGGGGTACTTGCTGAGGTTAC
AAGTATCCGTTTTGCGTCACATATACAGGGGAAACAGAGTAGATCAGCAG
TtagaaattgcaaaatgtcattgCGGGCCAATGTCAACAAATTCAGAAAA
TTGGAATCAGCTGTATTGAAGGAAACGAACCCTAAAGTAAAAAACCAGCA
CGCATATCAGCAAAGAAGGCTGACACAATTAAAGTTCAAAGAAATGAAGG
TTATTGCTGAAGGACGAGGAGCCCAATTGAAGTCTGACAAATTCCCAGAA
TTGGCAATGGTCCTAGAAGGCGTATTTGGTGCCAATGGTATGGAGAGCCA
TCCAAGACTATCTGATGATGTGCTTTACAAAGCCAAGAGTAATTCCATTA
TAATGGCCAAGGCTCGAGAAGTCCTGCTTGCACTGGCACCTAACAGCTTT
AACATTTCCCTATCATGTTGCTACAACTACACCCAAAATTACAAAGCAGG
AACCCATCAAGCAAAACGACATCACGATGGAAAAAACATCAATGCCCGGA
TTTCTTTGCACGCACCCCCAAGGATAGGTGTTGAAAAACCATCCCCAAAC
CTTCATTGGACATCATCCAATATAAATACTATAATTGCATCATCACCAAA
TGAAACTATCTTTGATTCAAAAGACGCTAAAAGTATTGTTTGTGCTGACA
TCTCACCAGTCCAAAGGATTggcaaaacttggaaaaaaagagaagGAACT
CTACTTGATCATGAATGGGATCAGAGCAGAAGAAACGCTGTCACTGACAC
AAAAAGAGACAAAGATTTACTAAAGGGGGTACTTGCTGAGGTTACAAGTA
TCCGTTTTGCGTCACATATACAGGGGAAACAGAGTAGATCAGCAGTtaga
aattgcaaaatgtcattgCGGGCCAATGTCAACAAATTCAGAAAATTGGA
ATCAGCTGTATTGAAGGAAACGAACCCTAAAGTAAAAAACCAGCACGCAT
ATCAGCAAAGAAGGCTGACACAATTAAAGTTCAAAGAAATGAAGGTTATT
GCTGAAGGACGAGGAGCCCAATTGAAGTCTGACAAATTCCCAGAATTGGC
AATGGTCCTAGAAGGCGTATTTGGTGCCAATGGTATGGAGAGCCATCCAA
GACTATCTGATGATGTGCTTTACAAAGCCAAGAGTAATTCCATTATAATG
GCCAAGGCTCGAGAAGTCCTGCTTGCACTGGCACCTAACAGCTTTAACAT
TTCCCTATCATGTTGCTACAACTACACCCAAAATTACAAAGCAGGAACCC
ATCAAGCAAAACGACATCACGATGGAAAAAACATCAATGCCCGGATTTCT
TTGCACGCACCCCCAAGGATAGGTGTTGAAAAACCATCCCCAAACCTTCA
TTGGACATCATCCAATATAAATACTATAATTGCATCATCACCAAATGAAA
CTATCTTTGATTCAAAAGACGCTAAAAGTATTGTTTGTGCTGACATCTCA
CCAGTCCAAAGGATTggcaaaacttggaaaaaaagagaagGAACTCTACT
TGATCATGAATGGGATCAGAGCAGAAGAAACGCTGTCACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045376XLOC_045376Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073160-proteinTCONS_00073160-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073160-exon-scaffold_87-1491911889:26507..27251TCONS_00073160-exon-scaffold_87-1491911889:26507..27251Clytia hemisphaericaexon
TCONS_00073160-exon-scaffold_87-1510915933:26507..27251TCONS_00073160-exon-scaffold_87-1510915933:26507..27251Clytia hemisphaericaexon
TCONS_00073160-exon-scaffold_87-1575043694:26507..27251TCONS_00073160-exon-scaffold_87-1575043694:26507..27251Clytia hemisphaericaexon
TCONS_00073160-exon-scaffold_87-1491911889:28521..28572TCONS_00073160-exon-scaffold_87-1491911889:28521..28572Clytia hemisphaericaexon
TCONS_00073160-exon-scaffold_87-1510915933:28521..28572TCONS_00073160-exon-scaffold_87-1510915933:28521..28572Clytia hemisphaericaexon
TCONS_00073160-exon-scaffold_87-1575043694:28521..28572TCONS_00073160-exon-scaffold_87-1575043694:28521..28572Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_87supercontigscaffold_87:26507..28572 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0 0 0 0 0 0 0 0 0 0.268524 0.323056 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073160 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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