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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073157 ID=TCONS_00073157|Name=TCONS_00073157|organism=Clytia hemisphaerica|type=transcript|length=805bp
tttagaATAATTAACGGCAAAGAAAACGGATTATGGATGTCATTTCAAAA
GATTTGCTGAAACAGTTTGTGTATATGGATTCCAAAGTCAATCTTTACGC
TCCTGATGGTTCTTTTGAAATACCTCTTAGTATGACTGCTGCCAAGTTGT
ATTCACCAGTCATCAAAACAGCTTTGGAAAGCCCGTTGAGCGTTTCAAAC
GGCGACCAGAAAGATGATTCTTACGAGAGTAGGATCACTCGGTCTATTGC
AGGTTCACAAGGCAAAAAGGAAAGCAAGCAAGTCACCTCGCAATTATCGG
GAGGAAATTTGCGTCGTATCAAAGTTGATGAATTTGATGGCAAAACAGTT
CAAATTTTTATTCGCTGTCTTCAAGGGCAGATTGATGATACAGAAGTCAA
AAGCTTTGATTGGAAATGTGTTATGGAAATCTTGAAGATGTTTCATTTCT
ATGAAGTTGATCACATGTATGATATTTTCTTGAAGCAAGCGATACAGCTC
ATGAGCAACGAGTTGATAGTGGAGGCAGTAcacttcatggaaatttatgg
GTTCCAAGAAAGTTGGTGTACTAGGATGGTTGATCTTCTGTATAATAATC
CAGCCACATTCAATACTCAAGAATGGAAAGATTCCATCTTGAAATGCCCT
CACACTCAATCTCGTTTACAAGCTTTTTATATCAAACGAAAACTAGGATA
TGGTTAACAAAACTTGTTTTAGGTTCAGATATTATGTAGCGGTGTAATTT
TATTCtgatttatataaaaaacatcTATTGTTCTTGTGTTAACTGAAaat
gattc Run BLAST on NCBI protein sequence of TCONS_00073157-protein >TCONS_00073157-protein ID=TCONS_00073157-protein|Name=TCONS_00073157-protein|organism=Clytia hemisphaerica|type=polypeptide|length=224bp
MDVISKDLLKQFVYMDSKVNLYAPDGSFEIPLSMTAAKLYSPVIKTALES
PLSVSNGDQKDDSYESRITRSIAGSQGKKESKQVTSQLSGGNLRRIKVDE
FDGKTVQIFIRCLQGQIDDTEVKSFDWKCVMEILKMFHFYEVDHMYDIFL
KQAIQLMSNELIVEAVHFMEIYGFQESWCTRMVDLLYNNPATFNTQEWKD
SILKCPHTQSRLQAFYIKRKLGYG Run BLAST on NCBI transcript from alignment at scaffold_86:1432712..1433516 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00073157 ID=TCONS_00073157|Name=TCONS_00073157|organism=Clytia hemisphaerica|type=transcript|length=805bp|location=Sequence derived from alignment at scaffold_86:1432712..1433516 (Clytia hemisphaerica)
gaatcattTTCAGTTAACACAAGAACAATAgatgttttttatataaatca
GAATAAAATTACACCGCTACATAATATCTGAACCTAAAACAAGTTTTGTT
AACCATATCCTAGTTTTCGTTTGATATAAAAAGCTTGTAAACGAGATTGA
GTGTGAGGGCATTTCAAGATGGAATCTTTCCATTCTTGAGTATTGAATGT
GGCTGGATTATTATACAGAAGATCAACCATCCTAGTACACCAACTTTCTT
GGAACccataaatttccatgaagtgTACTGCCTCCACTATCAACTCGTTG
CTCATGAGCTGTATCGCTTGCTTCAAGAAAATATCATACATGTGATCAAC
TTCATAGAAATGAAACATCTTCAAGATTTCCATAACACATTTCCAATCAA
AGCTTTTGACTTCTGTATCATCAATCTGCCCTTGAAGACAGCGAATAAAA
ATTTGAACTGTTTTGCCATCAAATTCATCAACTTTGATACGACGCAAATT
TCCTCCCGATAATTGCGAGGTGACTTGCTTGCTTTCCTTTTTGCCTTGTG
AACCTGCAATAGACCGAGTGATCCTACTCTCGTAAGAATCATCTTTCTGG
TCGCCGTTTGAAACGCTCAACGGGCTTTCCAAAGCTGTTTTGATGACTGG
TGAATACAACTTGGCAGCAGTCATACTAAGAGGTATTTCAAAAGAACCAT
CAGGAGCGTAAAGATTGACTTTGGAATCCATATACACAAACTGTTTCAGC
AAATCTTTTGAAATGACATCCATAATCCGTTTTCTTTGCCGTTAATTATt
ctaaa Coding sequence (CDS) from alignment at scaffold_86:1432712..1433516 >TCONS_00073157 ID=TCONS_00073157|Name=TCONS_00073157|organism=Clytia hemisphaerica|type=CDS|length=675bp|location=Sequence derived from alignment at scaffold_86:1432712..1433516 (Clytia hemisphaerica)
TTAACCATATCCTAGTTTTCGTTTGATATAAAAAGCTTGTAAACGAGATT
GAGTGTGAGGGCATTTCAAGATGGAATCTTTCCATTCTTGAGTATTGAAT
GTGGCTGGATTATTATACAGAAGATCAACCATCCTAGTACACCAACTTTC
TTGGAACccataaatttccatgaagtgTACTGCCTCCACTATCAACTCGT
TGCTCATGAGCTGTATCGCTTGCTTCAAGAAAATATCATACATGTGATCA
ACTTCATAGAAATGAAACATCTTCAAGATTTCCATAACACATTTCCAATC
AAAGCTTTTGACTTCTGTATCATCAATCTGCCCTTGAAGACAGCGAATAA
AAATTTGAACTGTTTTGCCATCAAATTCATCAACTTTGATACGACGCAAA
TTTCCTCCCGATAATTGCGAGGTGACTTGCTTGCTTTCCTTTTTGCCTTG
TGAACCTGCAATAGACCGAGTGATCCTACTCTCGTAAGAATCATCTTTCT
GGTCGCCGTTTGAAACGCTCAACGGGCTTTCCAAAGCTGTTTTGATGACT
GGTGAATACAACTTGGCAGCAGTCATACTAAGAGGTATTTCAAAAGAACC
ATCAGGAGCGTAAAGATTGACTTTGGAATCCATATACACAAACTGTTTCA
GCAAATCTTTTGAAATGACATCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00073157-exon-scaffold_86-1491911889:1432712..1433516 | TCONS_00073157-exon-scaffold_86-1491911889:1432712..1433516 | Clytia hemisphaerica | exon |
| TCONS_00073157-exon-scaffold_86-1510915933:1432712..1433516 | TCONS_00073157-exon-scaffold_86-1510915933:1432712..1433516 | Clytia hemisphaerica | exon |
| TCONS_00073157-exon-scaffold_86-1575043694:1432712..1433516 | TCONS_00073157-exon-scaffold_86-1575043694:1432712..1433516 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_86 | supercontig | scaffold_86:1432712..1433516 . |
Blast
The following BLAST results are available for this feature:
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