TCONS_00073152 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073152
Unique NameTCONS_00073152
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length668

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073152 ID=TCONS_00073152|Name=TCONS_00073152|organism=Clytia hemisphaerica|type=transcript|length=668bp
aaatttttcaataaattatcaTTCTTGTAATCTTACGATTTTAAcatttc
aattcccaaataGTCAAATAAAGTCGATGGTAAATTCGCTTCCATCAATT
GATGATAATTGAACGAtgtcaaaactttcaatttgttaaatttttcaata
aattatcaTTCTTGTAATCTTACGATTTTAAcatttcaattcccaaataG
TCAAATAAAGTCGATGGTAAATTCGCTTCCATCAATTGATGATAATTGAA
CGAtgtcaaaactttcaatttgttaaatttttcaataaattatcaTTCTT
GTAATCTTACGATTTTAAcatttcaattcccaaataGTCAAATAAAGTCG
ATGGTAAATTCGCTTCCATCAATTGATGATAATTGAACGAtgtcaaaact
ttcaatttgttaaatttttcaataaattatcaTTCTTGTAATCTTACGAT
TTTAAcatttcaattcccaaataGTCAAATAAAGTCGATGGTAAATTCGC
TTCCATCAATTGATGATAATTGAAAGAtgtcaaaactttcaatttatAAA
TTTGTCAATAATTTATCCTTCCTGTAATCTTACGATTTTAAcatttcaat
tcccaaataGTCAAACAATGTTGATGGCAAATTCGCTTCCATCAATTAGT
GATAATTGAACGATGTCA
Run BLAST on NCBI

transcript from alignment at scaffold_86:1406319..1406986

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073152 ID=TCONS_00073152|Name=TCONS_00073152|organism=Clytia hemisphaerica|type=transcript|length=668bp|location=Sequence derived from alignment at scaffold_86:1406319..1406986 (Clytia hemisphaerica)
TGACATCGTTCAATTATCACTAATTGATGGAAGCGAATTTGCCATCAACA
TTGTTTGACtatttgggaattgaaatgTTAAAATCGTAAGATTACAGGAA
GGATAAATTATTGACAAATTTataaattgaaagttttgacaTCTTTCAAT
TATCATCAATTGATGGAAGCGAATTTACCATCGACTTTATTTGACtattt
gggaattgaaatgTTAAAATCGTAAGATTACAAGAAtgataatttattga
aaaatttaacaaattgaaagttttgacaTCGTTCAATTATCATCAATTGA
TGGAAGCGAATTTACCATCGACTTTATTTGACtatttgggaattgaaatg
TTAAAATCGTAAGATTACAAGAAtgataatttattgaaaaatttaacaaa
ttgaaagttttgacaTCGTTCAATTATCATCAATTGATGGAAGCGAATTT
ACCATCGACTTTATTTGACtatttgggaattgaaatgTTAAAATCGTAAG
ATTACAAGAAtgataatttattgaaaaatttaacaaattgaaagttttga
caTCGTTCAATTATCATCAATTGATGGAAGCGAATTTACCATCGACTTTA
TTTGACtatttgggaattgaaatgTTAAAATCGTAAGATTACAAGAAtga
taatttattgaaaaattt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045369XLOC_045369Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073152-exon-scaffold_86-1491911889:1406319..1406986TCONS_00073152-exon-scaffold_86-1491911889:1406319..1406986Clytia hemisphaericaexon
TCONS_00073152-exon-scaffold_86-1510915933:1406319..1406986TCONS_00073152-exon-scaffold_86-1510915933:1406319..1406986Clytia hemisphaericaexon
TCONS_00073152-exon-scaffold_86-1575043694:1406319..1406986TCONS_00073152-exon-scaffold_86-1575043694:1406319..1406986Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_86supercontigscaffold_86:1406319..1406986 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.238891	0.616569	0.810363	0.271123	0	0.0823676	0.231639	0	0	0	0	0	0.0687388	0	0.13167	0.225913	0	0.0610878	0	0.297465	0.629055	0.272972	0.467544	0.821815	0	0	0.105985	0.119026	0.0885462	0.202854
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073152 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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