TCONS_00073146 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073146
Unique NameTCONS_00073146
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length536

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073146 ID=TCONS_00073146|Name=TCONS_00073146|organism=Clytia hemisphaerica|type=transcript|length=536bp
agccctttaaAGGCAATTTTGattcgaaaattctcatttttatccaacga
ttcgtgaaagtttatcctgcaaaaaacattttttcctcaaattcgcggga
tgagatggagtttttacaagctcttatttgatttggttggttgttaacCA
GTAAATTCGCGAAAACAAATGTCGTAAATTTGTCGtaatttttcgacctc
gcgaaagtttctgctcgcgaaagtttgtacgcctaaagtatattATAAGT
TAAGACCTGTCCGGTTTTAATAAAAACGTAGGATTGGAAAAATGTAACAC
ACGTAAACAAAAAAAGTGCTTGATTCAATCTGTCATCTGAAATATAACGC
AAATGTTAAGGCTTGCGTGCCTAGGAAAGGTTTAAGATTCCTCattagcc
ttcggcttgaaactttATCCTAAGGCAGAGGCTACAGTGATATCCACATA
AGATCTAAATAAAGGGTCAATAATGCAAACAAAAGCTTGGACtgtatact
tttgaaaaaaacttaaatagtattgggctattccag
Run BLAST on NCBI

transcript from alignment at scaffold_86:1334175..1334710

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073146 ID=TCONS_00073146|Name=TCONS_00073146|organism=Clytia hemisphaerica|type=transcript|length=536bp|location=Sequence derived from alignment at scaffold_86:1334175..1334710 (Clytia hemisphaerica)
ctggaatagcccaatactatttaagtttttttcaaaagtatacaGTCCAA
GCTTTTGTTTGCATTATTGACCCTTTATTTAGATCTTATGTGGATATCAC
TGTAGCCTCTGCCTTAGGATaaagtttcaagccgaaggctaatGAGGAAT
CTTAAACCTTTCCTAGGCACGCAAGCCTTAACATTTGCGTTATATTTCAG
ATGACAGATTGAATCAAGCACTTTTTTTGTTTACGTGTGTTACATTTTTC
CAATCCTACGTTTTTATTAAAACCGGACAGGTCTTAACTTATaatatact
ttaggcgtacaaactttcgcgagcagaaactttcgcgaggtcgaaaaatt
aCGACAAATTTACGACATTTGTTTTCGCGAATTTACTGgttaacaaccaa
ccaaatcaaataagagcttgtaaaaactccatctcatcccgcgaatttga
ggaaaaaatgttttttgcaggataaactttcacgaatcgttggataaaaa
tgagaattttcgaatCAAAATTGCCTttaaagggct
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045363XLOC_045363Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073146-exon-scaffold_86-1491911889:1334175..1334710TCONS_00073146-exon-scaffold_86-1491911889:1334175..1334710Clytia hemisphaericaexon
TCONS_00073146-exon-scaffold_86-1510915933:1334175..1334710TCONS_00073146-exon-scaffold_86-1510915933:1334175..1334710Clytia hemisphaericaexon
TCONS_00073146-exon-scaffold_86-1575043694:1334175..1334710TCONS_00073146-exon-scaffold_86-1575043694:1334175..1334710Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_86supercontigscaffold_86:1334175..1334710 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.358456	0.221382	0.890701	0.734042	2.46926	0.476208	1.48007	1.51278	0.869392	1.16547	0.334607	0.673882	1.0316	0.462591	0.534425	0.554594	0.326629	0.85354	0.818829	0.883886	0.9884	0.479327	0.38237	0.463114	0	1.17418	0.911455	0.616869	0.406992	0.497693
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073146 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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