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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073139 ID=TCONS_00073139|Name=TCONS_00073139|organism=Clytia hemisphaerica|type=transcript|length=888bp
CCTTTTGTGTCCTGGAAGCCAGACCCATACGCACTAGCAACGGATGCAAT
GCAAATGTGTTGGACCCAAAGGAAACCTTACGCATTCCCTCCATTTTCAC
TAATTGGAAGGGTATTAGAAAAGGTGGACCAAGAGGAGGGGAACATGGTA
CTAATAGCCCCTATTTGGCAAACACAGACATGGTACCCGAAGCTAGTGGA
AATGTGTGTCAGAAGACCCATTCTTCTTCCAACGACGGGGGAAATCCTGA
GAGACCCAAAGGGAAACAAACATCCATTGGGGGAGACCTTGAGACTAGGA
GCATGGCTAATCTCTGGGGTAAACATCTTAAGACAGGAATTTCAGAAGGG
GCAACCCAGCTTATTGCAGATGCCCGATCTAGAGGTACAAAGGCTGCTTA
CAAATCGTCCTGGAAACGGTGGAGCAGCTGGTGTGAGCAAAGGAAGGTTG
ATCCTATTCGATGTGCTATAGAAGAGGTCCTAGAATTTCTCACAAAATGC
TTCAACGAAGGTCAACAATATAGAACCATTAATAAACATAGATCAGCAAT
TTCAGCCCTCCATGAAGAAATAGAAGGAGTGGCAGTAGGGAAAAACCCAC
TTGTATGCAAACTAATGAAAGGTGTCTCTAACAACCGCCCACCCAAACCC
AGACTGGTGTTTGTGTGGGANCAGTATGCGAAAAGGATTTGGGATTACCT
TCTAAAACACCAGATCATGATTACTGTGGAGTACCTCCCAAGTCACCTGA
ACAAAGAGGCGGACAGGGAATCCAGACGGGGTCTGGACCGCAGCGAGTGG
AAACTAGACCCAAAAGTTTTCAGGGAAACAtgcaaaaaatttcaattcca
aCCGACAATAGATCTGTTTGCCTCCCGACACTCATTTC Run BLAST on NCBI protein sequence of TCONS_00073139-protein >TCONS_00073139-protein ID=TCONS_00073139-protein|Name=TCONS_00073139-protein|organism=Clytia hemisphaerica|type=polypeptide|length=295bp
FCVLEARPIRTSNGCNANVLDPKETLRIPSIFTNWKGIRKGGPRGGEHGT
NSPYLANTDMVPEASGNVCQKTHSSSNDGGNPERPKGKQTSIGGDLETRS
MANLWGKHLKTGISEGATQLIADARSRGTKAAYKSSWKRWSSWCEQRKVD
PIRCAIEEVLEFLTKCFNEGQQYRTINKHRSAISALHEEIEGVAVGKNPL
VCKLMKGVSNNRPPKPRLVFVWXQYAKRIWDYLLKHQIMITVEYLPSHLN
KEADRESRRGLDRSEWKLDPKVFRETCKKFQFQPTIDLFASRHSF Run BLAST on NCBI transcript from alignment at scaffold_86:1012611..1013498 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00073139 ID=TCONS_00073139|Name=TCONS_00073139|organism=Clytia hemisphaerica|type=transcript|length=888bp|location=Sequence derived from alignment at scaffold_86:1012611..1013498 (Clytia hemisphaerica)
GAAATGAGTGTCGGGAGGCAAACAGATCTATTGTCGGttggaattgaaat
tttttgcaTGTTTCCCTGAAAACTTTTGGGTCTAGTTTCCACTCGCTGCG
GTCCAGACCCCGTCTGGATTCCCTGTCCGCCTCTTTGTTCAGGTGACTTG
GGAGGTACTCCACAGTAATCATGATCTGGTGTTTTAGAAGGTAATCCCAA
ATCCTTTTCGCATACTGNTCCCACACAAACACCAGTCTGGGTTTGGGTGG
GCGGTTGTTAGAGACACCTTTCATTAGTTTGCATACAAGTGGGTTTTTCC
CTACTGCCACTCCTTCTATTTCTTCATGGAGGGCTGAAATTGCTGATCTA
TGTTTATTAATGGTTCTATATTGTTGACCTTCGTTGAAGCATTTTGTGAG
AAATTCTAGGACCTCTTCTATAGCACATCGAATAGGATCAACCTTCCTTT
GCTCACACCAGCTGCTCCACCGTTTCCAGGACGATTTGTAAGCAGCCTTT
GTACCTCTAGATCGGGCATCTGCAATAAGCTGGGTTGCCCCTTCTGAAAT
TCCTGTCTTAAGATGTTTACCCCAGAGATTAGCCATGCTCCTAGTCTCAA
GGTCTCCCCCAATGGATGTTTGTTTCCCTTTGGGTCTCTCAGGATTTCCC
CCGTCGTTGGAAGAAGAATGGGTCTTCTGACACACATTTCCACTAGCTTC
GGGTACCATGTCTGTGTTTGCCAAATAGGGGCTATTAGTACCATGTTCCC
CTCCTCTTGGTCCACCTTTTCTAATACCCTTCCAATTAGTGAAAATGGAG
GGAATGCGTAAGGTTTCCTTTGGGTCCAACACATTTGCATTGCATCCGTT
GCTAGTGCGTATGGGTCTGGCTTCCAGGACACAAAAGG Coding sequence (CDS) from alignment at scaffold_86:1012611..1013498 >TCONS_00073139 ID=TCONS_00073139|Name=TCONS_00073139|organism=Clytia hemisphaerica|type=CDS|length=885bp|location=Sequence derived from alignment at scaffold_86:1012611..1013498 (Clytia hemisphaerica)
AAATGAGTGTCGGGAGGCAAACAGATCTATTGTCGGttggaattgaaatt
ttttgcaTGTTTCCCTGAAAACTTTTGGGTCTAGTTTCCACTCGCTGCGG
TCCAGACCCCGTCTGGATTCCCTGTCCGCCTCTTTGTTCAGGTGACTTGG
GAGGTACTCCACAGTAATCATGATCTGGTGTTTTAGAAGGTAATCCCAAA
TCCTTTTCGCATACTGNTCCCACACAAACACCAGTCTGGGTTTGGGTGGG
CGGTTGTTAGAGACACCTTTCATTAGTTTGCATACAAGTGGGTTTTTCCC
TACTGCCACTCCTTCTATTTCTTCATGGAGGGCTGAAATTGCTGATCTAT
GTTTATTAATGGTTCTATATTGTTGACCTTCGTTGAAGCATTTTGTGAGA
AATTCTAGGACCTCTTCTATAGCACATCGAATAGGATCAACCTTCCTTTG
CTCACACCAGCTGCTCCACCGTTTCCAGGACGATTTGTAAGCAGCCTTTG
TACCTCTAGATCGGGCATCTGCAATAAGCTGGGTTGCCCCTTCTGAAATT
CCTGTCTTAAGATGTTTACCCCAGAGATTAGCCATGCTCCTAGTCTCAAG
GTCTCCCCCAATGGATGTTTGTTTCCCTTTGGGTCTCTCAGGATTTCCCC
CGTCGTTGGAAGAAGAATGGGTCTTCTGACACACATTTCCACTAGCTTCG
GGTACCATGTCTGTGTTTGCCAAATAGGGGCTATTAGTACCATGTTCCCC
TCCTCTTGGTCCACCTTTTCTAATACCCTTCCAATTAGTGAAAATGGAGG
GAATGCGTAAGGTTTCCTTTGGGTCCAACACATTTGCATTGCATCCGTTG
CTAGTGCGTATGGGTCTGGCTTCCAGGACACAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00073139-exon-scaffold_86-1491911889:1012611..1013498 | TCONS_00073139-exon-scaffold_86-1491911889:1012611..1013498 | Clytia hemisphaerica | exon |
| TCONS_00073139-exon-scaffold_86-1510915933:1012611..1013498 | TCONS_00073139-exon-scaffold_86-1510915933:1012611..1013498 | Clytia hemisphaerica | exon |
| TCONS_00073139-exon-scaffold_86-1575043694:1012611..1013498 | TCONS_00073139-exon-scaffold_86-1575043694:1012611..1013498 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_86 | supercontig | scaffold_86:1012611..1013498 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0015074 | DNA integration |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003677 | DNA binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0015074 |
DNA integration |
| molecular_function |
GO:0003677 |
DNA binding |
Blast
The following BLAST results are available for this feature:
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