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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073138 ID=TCONS_00073138|Name=TCONS_00073138|organism=Clytia hemisphaerica|type=transcript|length=1403bp
GAGAGACCCAAAGGGAAACAAACATCCATTGGGGGAGACCTTGAGACTAG
GAGCATGGCTAATCTCTGGGGTAAACATCTTAAGACAGGAATTTCAGAAG
GGGCAACCCAGCTTATTGCAGATGCCCGATCTAGAGGTACAAAGGCTGCT
TACAAATCGTCCTGGAAACGGTGGAGCAGCTGGTGTGAGCAAAGGAAGGT
TGATCCTATTCGATGTGCTATAGAAGAGATCCTAGAATTTCTCACAAAAT
GCTTCAACGAAGGTCAACAATACAGAACCATTAATAAACATAGATCAGCA
ATTTCAGCCCTCCATGAAGAAATAGAAGGGGTGGCAGTAGGGAAAAACCC
ACTTGTATGCAAACTAATGAAAGGTGTCTCTAACAACCGCCCACCCAAAC
CCAGACTGGTGTTTGTGTGGGATGTGAAACAAGTGCTAGATTTTATCAAG
GGTATGGGCAAGTCCTGTAATCTGAGCAACAAGAATCTGTCCCTTAAATG
TGTGGCTTTACTGTCAATTTGCCTGATAAACAGGGGTTCCGAAATAGGGA
AACTAAGAAAGGAATACATGTTTGAGGCTCAAGATTGTGTAGTCTTTGGA
ATTGAAGGACGAGTAAAACACTCACAAACAGGGAAAGCTAACTCCAACAT
CAAAGTTTATAAGTTTCCAGAGGACTCAGATCTGTGCCCAGTCGAAACTT
TGAAAACGTACTTAGAAAGAACAAAACCCTGGAGGAAAGAAGAGGGTAGT
GGGATTTTCCTAAGCTATGTTAAACCCCATGACCAGGTTTCGAAGAAGAC
GATAGCTAGATGGTTACTAACGATGTTAGAAAAAGCAGGGATCCCAACAT
CAAAATTCACGGCACATTCTTTTAGGTCGGCTGGATCGTCTAAAGCAAGA
GCCCTAGGGGTGTCATTAAAAGACATTTTGAAACAAGGCAGTTGGAAAAG
TCAAACTGTTTGGGAAAGACATTATAATAAGGCTATTATAGATCTCTCAT
CATTTCAATCTTCCATACTAAAATCCTCCAATAACAAGCTTTAAACAGAG
GCGAATTTACCGGCAGCCGAACAAGATATACTAAGTTTGGCTGCATCGTA
AATTCGTTCGTGTAATTTCCGGaatgaaattacaaaattacCTTAGGGCA
TAGCCTGACAGGTAATTAAGATTTCATAAGGAAATTACACGAACGAATTT
ACGCCCACCCACCGCAACCCGTGGGATTTCATATGGAAGACTtattaaac
aaattttgtttctacAGGTTCGAATGGTTCAAACAGAAGAGGTCGTGGAG
GACCACGCAGAGGAAGATAATTTACAGTTTACTTCACTCATTATTTtatt
acatgtaaaatacatttGAACAAAGCATAAATCGAATAATGTCTATTTTC
TTG Run BLAST on NCBI protein sequence of TCONS_00073138-protein >TCONS_00073138-protein ID=TCONS_00073138-protein|Name=TCONS_00073138-protein|organism=Clytia hemisphaerica|type=polypeptide|length=347bp
ERPKGKQTSIGGDLETRSMANLWGKHLKTGISEGATQLIADARSRGTKAA
YKSSWKRWSSWCEQRKVDPIRCAIEEILEFLTKCFNEGQQYRTINKHRSA
ISALHEEIEGVAVGKNPLVCKLMKGVSNNRPPKPRLVFVWDVKQVLDFIK
GMGKSCNLSNKNLSLKCVALLSICLINRGSEIGKLRKEYMFEAQDCVVFG
IEGRVKHSQTGKANSNIKVYKFPEDSDLCPVETLKTYLERTKPWRKEEGS
GIFLSYVKPHDQVSKKTIARWLLTMLEKAGIPTSKFTAHSFRSAGSSKAR
ALGVSLKDILKQGSWKSQTVWERHYNKAIIDLSSFQSSILKSSNNKL Run BLAST on NCBI transcript from alignment at scaffold_86:1010952..1012354 Legend: exonthree_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00073138 ID=TCONS_00073138|Name=TCONS_00073138|organism=Clytia hemisphaerica|type=transcript|length=1403bp|location=Sequence derived from alignment at scaffold_86:1010952..1012354 (Clytia hemisphaerica)
CAAGAAAATAGACATTATTCGATTTATGCTTTGTTCaaatgtattttaca
tgtaataAAATAATGAGTGAAGTAAACTGTAAATTATCTTCCTCTGCGTG
GTCCTCCACGACCTCTTCTGTTTGAACCATTCGAACCTgtagaaacaaaa
tttgtttaataAGTCTTCCATATGAAATCCCACGGGTTGCGGTGGGTGGG
CGTAAATTCGTTCGTGTAATTTCCTTATGAAATCTTAATTACCTGTCAGG
CTATGCCCTAAGgtaattttgtaatttcattCCGGAAATTACACGAACGA
ATTTACGATGCAGCCAAACTTAGTATATCTTGTTCGGCTGCCGGTAAATT
CGCCTCTGTTTAAAGCTTGTTATTGGAGGATTTTAGTATGGAAGATTGAA
ATGATGAGAGATCTATAATAGCCTTATTATAATGTCTTTCCCAAACAGTT
TGACTTTTCCAACTGCCTTGTTTCAAAATGTCTTTTAATGACACCCCTAG
GGCTCTTGCTTTAGACGATCCAGCCGACCTAAAAGAATGTGCCGTGAATT
TTGATGTTGGGATCCCTGCTTTTTCTAACATCGTTAGTAACCATCTAGCT
ATCGTCTTCTTCGAAACCTGGTCATGGGGTTTAACATAGCTTAGGAAAAT
CCCACTACCCTCTTCTTTCCTCCAGGGTTTTGTTCTTTCTAAGTACGTTT
TCAAAGTTTCGACTGGGCACAGATCTGAGTCCTCTGGAAACTTATAAACT
TTGATGTTGGAGTTAGCTTTCCCTGTTTGTGAGTGTTTTACTCGTCCTTC
AATTCCAAAGACTACACAATCTTGAGCCTCAAACATGTATTCCTTTCTTA
GTTTCCCTATTTCGGAACCCCTGTTTATCAGGCAAATTGACAGTAAAGCC
ACACATTTAAGGGACAGATTCTTGTTGCTCAGATTACAGGACTTGCCCAT
ACCCTTGATAAAATCTAGCACTTGTTTCACATCCCACACAAACACCAGTC
TGGGTTTGGGTGGGCGGTTGTTAGAGACACCTTTCATTAGTTTGCATACA
AGTGGGTTTTTCCCTACTGCCACCCCTTCTATTTCTTCATGGAGGGCTGA
AATTGCTGATCTATGTTTATTAATGGTTCTGTATTGTTGACCTTCGTTGA
AGCATTTTGTGAGAAATTCTAGGATCTCTTCTATAGCACATCGAATAGGA
TCAACCTTCCTTTGCTCACACCAGCTGCTCCACCGTTTCCAGGACGATTT
GTAAGCAGCCTTTGTACCTCTAGATCGGGCATCTGCAATAAGCTGGGTTG
CCCCTTCTGAAATTCCTGTCTTAAGATGTTTACCCCAGAGATTAGCCATG
CTCCTAGTCTCAAGGTCTCCCCCAATGGATGTTTGTTTCCCTTTGGGTCT
CTC Coding sequence (CDS) from alignment at scaffold_86:1010952..1012354 >TCONS_00073138 ID=TCONS_00073138|Name=TCONS_00073138|organism=Clytia hemisphaerica|type=CDS|length=1044bp|location=Sequence derived from alignment at scaffold_86:1010952..1012354 (Clytia hemisphaerica)
TTAAAGCTTGTTATTGGAGGATTTTAGTATGGAAGATTGAAATGATGAGA
GATCTATAATAGCCTTATTATAATGTCTTTCCCAAACAGTTTGACTTTTC
CAACTGCCTTGTTTCAAAATGTCTTTTAATGACACCCCTAGGGCTCTTGC
TTTAGACGATCCAGCCGACCTAAAAGAATGTGCCGTGAATTTTGATGTTG
GGATCCCTGCTTTTTCTAACATCGTTAGTAACCATCTAGCTATCGTCTTC
TTCGAAACCTGGTCATGGGGTTTAACATAGCTTAGGAAAATCCCACTACC
CTCTTCTTTCCTCCAGGGTTTTGTTCTTTCTAAGTACGTTTTCAAAGTTT
CGACTGGGCACAGATCTGAGTCCTCTGGAAACTTATAAACTTTGATGTTG
GAGTTAGCTTTCCCTGTTTGTGAGTGTTTTACTCGTCCTTCAATTCCAAA
GACTACACAATCTTGAGCCTCAAACATGTATTCCTTTCTTAGTTTCCCTA
TTTCGGAACCCCTGTTTATCAGGCAAATTGACAGTAAAGCCACACATTTA
AGGGACAGATTCTTGTTGCTCAGATTACAGGACTTGCCCATACCCTTGAT
AAAATCTAGCACTTGTTTCACATCCCACACAAACACCAGTCTGGGTTTGG
GTGGGCGGTTGTTAGAGACACCTTTCATTAGTTTGCATACAAGTGGGTTT
TTCCCTACTGCCACCCCTTCTATTTCTTCATGGAGGGCTGAAATTGCTGA
TCTATGTTTATTAATGGTTCTGTATTGTTGACCTTCGTTGAAGCATTTTG
TGAGAAATTCTAGGATCTCTTCTATAGCACATCGAATAGGATCAACCTTC
CTTTGCTCACACCAGCTGCTCCACCGTTTCCAGGACGATTTGTAAGCAGC
CTTTGTACCTCTAGATCGGGCATCTGCAATAAGCTGGGTTGCCCCTTCTG
AAATTCCTGTCTTAAGATGTTTACCCCAGAGATTAGCCATGCTCCTAGTC
TCAAGGTCTCCCCCAATGGATGTTTGTTTCCCTTTGGGTCTCTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00073138-exon-scaffold_86-1491911889:1010952..1012354 | TCONS_00073138-exon-scaffold_86-1491911889:1010952..1012354 | Clytia hemisphaerica | exon |
| TCONS_00073138-exon-scaffold_86-1510915933:1010952..1012354 | TCONS_00073138-exon-scaffold_86-1510915933:1010952..1012354 | Clytia hemisphaerica | exon |
| TCONS_00073138-exon-scaffold_86-1575043694:1010952..1012354 | TCONS_00073138-exon-scaffold_86-1575043694:1010952..1012354 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_86 | supercontig | scaffold_86:1010952..1012354 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003677 | DNA binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006310 | DNA recombination |
| GO:0015074 | DNA integration |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0015074 |
DNA integration |
| biological_process |
GO:0006310 |
DNA recombination |
| molecular_function |
GO:0003677 |
DNA binding |
Blast
The following BLAST results are available for this feature:
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