TCONS_00073138 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073138
Unique NameTCONS_00073138
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1403

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073138 ID=TCONS_00073138|Name=TCONS_00073138|organism=Clytia hemisphaerica|type=transcript|length=1403bp
GAGAGACCCAAAGGGAAACAAACATCCATTGGGGGAGACCTTGAGACTAG
GAGCATGGCTAATCTCTGGGGTAAACATCTTAAGACAGGAATTTCAGAAG
GGGCAACCCAGCTTATTGCAGATGCCCGATCTAGAGGTACAAAGGCTGCT
TACAAATCGTCCTGGAAACGGTGGAGCAGCTGGTGTGAGCAAAGGAAGGT
TGATCCTATTCGATGTGCTATAGAAGAGATCCTAGAATTTCTCACAAAAT
GCTTCAACGAAGGTCAACAATACAGAACCATTAATAAACATAGATCAGCA
ATTTCAGCCCTCCATGAAGAAATAGAAGGGGTGGCAGTAGGGAAAAACCC
ACTTGTATGCAAACTAATGAAAGGTGTCTCTAACAACCGCCCACCCAAAC
CCAGACTGGTGTTTGTGTGGGATGTGAAACAAGTGCTAGATTTTATCAAG
GGTATGGGCAAGTCCTGTAATCTGAGCAACAAGAATCTGTCCCTTAAATG
TGTGGCTTTACTGTCAATTTGCCTGATAAACAGGGGTTCCGAAATAGGGA
AACTAAGAAAGGAATACATGTTTGAGGCTCAAGATTGTGTAGTCTTTGGA
ATTGAAGGACGAGTAAAACACTCACAAACAGGGAAAGCTAACTCCAACAT
CAAAGTTTATAAGTTTCCAGAGGACTCAGATCTGTGCCCAGTCGAAACTT
TGAAAACGTACTTAGAAAGAACAAAACCCTGGAGGAAAGAAGAGGGTAGT
GGGATTTTCCTAAGCTATGTTAAACCCCATGACCAGGTTTCGAAGAAGAC
GATAGCTAGATGGTTACTAACGATGTTAGAAAAAGCAGGGATCCCAACAT
CAAAATTCACGGCACATTCTTTTAGGTCGGCTGGATCGTCTAAAGCAAGA
GCCCTAGGGGTGTCATTAAAAGACATTTTGAAACAAGGCAGTTGGAAAAG
TCAAACTGTTTGGGAAAGACATTATAATAAGGCTATTATAGATCTCTCAT
CATTTCAATCTTCCATACTAAAATCCTCCAATAACAAGCTTTAAACAGAG
GCGAATTTACCGGCAGCCGAACAAGATATACTAAGTTTGGCTGCATCGTA
AATTCGTTCGTGTAATTTCCGGaatgaaattacaaaattacCTTAGGGCA
TAGCCTGACAGGTAATTAAGATTTCATAAGGAAATTACACGAACGAATTT
ACGCCCACCCACCGCAACCCGTGGGATTTCATATGGAAGACTtattaaac
aaattttgtttctacAGGTTCGAATGGTTCAAACAGAAGAGGTCGTGGAG
GACCACGCAGAGGAAGATAATTTACAGTTTACTTCACTCATTATTTtatt
acatgtaaaatacatttGAACAAAGCATAAATCGAATAATGTCTATTTTC
TTG
Run BLAST on NCBI

protein sequence of TCONS_00073138-protein

>TCONS_00073138-protein ID=TCONS_00073138-protein|Name=TCONS_00073138-protein|organism=Clytia hemisphaerica|type=polypeptide|length=347bp
ERPKGKQTSIGGDLETRSMANLWGKHLKTGISEGATQLIADARSRGTKAA
YKSSWKRWSSWCEQRKVDPIRCAIEEILEFLTKCFNEGQQYRTINKHRSA
ISALHEEIEGVAVGKNPLVCKLMKGVSNNRPPKPRLVFVWDVKQVLDFIK
GMGKSCNLSNKNLSLKCVALLSICLINRGSEIGKLRKEYMFEAQDCVVFG
IEGRVKHSQTGKANSNIKVYKFPEDSDLCPVETLKTYLERTKPWRKEEGS
GIFLSYVKPHDQVSKKTIARWLLTMLEKAGIPTSKFTAHSFRSAGSSKAR
ALGVSLKDILKQGSWKSQTVWERHYNKAIIDLSSFQSSILKSSNNKL
Run BLAST on NCBI

transcript from alignment at scaffold_86:1010952..1012354

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073138 ID=TCONS_00073138|Name=TCONS_00073138|organism=Clytia hemisphaerica|type=transcript|length=1403bp|location=Sequence derived from alignment at scaffold_86:1010952..1012354 (Clytia hemisphaerica)
CAAGAAAATAGACATTATTCGATTTATGCTTTGTTCaaatgtattttaca tgtaataAAATAATGAGTGAAGTAAACTGTAAATTATCTTCCTCTGCGTG GTCCTCCACGACCTCTTCTGTTTGAACCATTCGAACCTgtagaaacaaaa tttgtttaataAGTCTTCCATATGAAATCCCACGGGTTGCGGTGGGTGGG CGTAAATTCGTTCGTGTAATTTCCTTATGAAATCTTAATTACCTGTCAGG CTATGCCCTAAGgtaattttgtaatttcattCCGGAAATTACACGAACGA ATTTACGATGCAGCCAAACTTAGTATATCTTGTTCGGCTGCCGGTAAATT CGCCTCTGTTTAAAGCTTGTTATTGGAGGATTTTAGTATGGAAGATTGAA ATGATGAGAGATCTATAATAGCCTTATTATAATGTCTTTCCCAAACAGTT TGACTTTTCCAACTGCCTTGTTTCAAAATGTCTTTTAATGACACCCCTAG GGCTCTTGCTTTAGACGATCCAGCCGACCTAAAAGAATGTGCCGTGAATT TTGATGTTGGGATCCCTGCTTTTTCTAACATCGTTAGTAACCATCTAGCT ATCGTCTTCTTCGAAACCTGGTCATGGGGTTTAACATAGCTTAGGAAAAT CCCACTACCCTCTTCTTTCCTCCAGGGTTTTGTTCTTTCTAAGTACGTTT TCAAAGTTTCGACTGGGCACAGATCTGAGTCCTCTGGAAACTTATAAACT TTGATGTTGGAGTTAGCTTTCCCTGTTTGTGAGTGTTTTACTCGTCCTTC AATTCCAAAGACTACACAATCTTGAGCCTCAAACATGTATTCCTTTCTTA GTTTCCCTATTTCGGAACCCCTGTTTATCAGGCAAATTGACAGTAAAGCC ACACATTTAAGGGACAGATTCTTGTTGCTCAGATTACAGGACTTGCCCAT ACCCTTGATAAAATCTAGCACTTGTTTCACATCCCACACAAACACCAGTC TGGGTTTGGGTGGGCGGTTGTTAGAGACACCTTTCATTAGTTTGCATACA AGTGGGTTTTTCCCTACTGCCACCCCTTCTATTTCTTCATGGAGGGCTGA AATTGCTGATCTATGTTTATTAATGGTTCTGTATTGTTGACCTTCGTTGA AGCATTTTGTGAGAAATTCTAGGATCTCTTCTATAGCACATCGAATAGGA TCAACCTTCCTTTGCTCACACCAGCTGCTCCACCGTTTCCAGGACGATTT GTAAGCAGCCTTTGTACCTCTAGATCGGGCATCTGCAATAAGCTGGGTTG CCCCTTCTGAAATTCCTGTCTTAAGATGTTTACCCCAGAGATTAGCCATG CTCCTAGTCTCAAGGTCTCCCCCAATGGATGTTTGTTTCCCTTTGGGTCT CTC

Coding sequence (CDS) from alignment at scaffold_86:1010952..1012354

>TCONS_00073138 ID=TCONS_00073138|Name=TCONS_00073138|organism=Clytia hemisphaerica|type=CDS|length=1044bp|location=Sequence derived from alignment at scaffold_86:1010952..1012354 (Clytia hemisphaerica)
TTAAAGCTTGTTATTGGAGGATTTTAGTATGGAAGATTGAAATGATGAGA
GATCTATAATAGCCTTATTATAATGTCTTTCCCAAACAGTTTGACTTTTC
CAACTGCCTTGTTTCAAAATGTCTTTTAATGACACCCCTAGGGCTCTTGC
TTTAGACGATCCAGCCGACCTAAAAGAATGTGCCGTGAATTTTGATGTTG
GGATCCCTGCTTTTTCTAACATCGTTAGTAACCATCTAGCTATCGTCTTC
TTCGAAACCTGGTCATGGGGTTTAACATAGCTTAGGAAAATCCCACTACC
CTCTTCTTTCCTCCAGGGTTTTGTTCTTTCTAAGTACGTTTTCAAAGTTT
CGACTGGGCACAGATCTGAGTCCTCTGGAAACTTATAAACTTTGATGTTG
GAGTTAGCTTTCCCTGTTTGTGAGTGTTTTACTCGTCCTTCAATTCCAAA
GACTACACAATCTTGAGCCTCAAACATGTATTCCTTTCTTAGTTTCCCTA
TTTCGGAACCCCTGTTTATCAGGCAAATTGACAGTAAAGCCACACATTTA
AGGGACAGATTCTTGTTGCTCAGATTACAGGACTTGCCCATACCCTTGAT
AAAATCTAGCACTTGTTTCACATCCCACACAAACACCAGTCTGGGTTTGG
GTGGGCGGTTGTTAGAGACACCTTTCATTAGTTTGCATACAAGTGGGTTT
TTCCCTACTGCCACCCCTTCTATTTCTTCATGGAGGGCTGAAATTGCTGA
TCTATGTTTATTAATGGTTCTGTATTGTTGACCTTCGTTGAAGCATTTTG
TGAGAAATTCTAGGATCTCTTCTATAGCACATCGAATAGGATCAACCTTC
CTTTGCTCACACCAGCTGCTCCACCGTTTCCAGGACGATTTGTAAGCAGC
CTTTGTACCTCTAGATCGGGCATCTGCAATAAGCTGGGTTGCCCCTTCTG
AAATTCCTGTCTTAAGATGTTTACCCCAGAGATTAGCCATGCTCCTAGTC
TCAAGGTCTCCCCCAATGGATGTTTGTTTCCCTTTGGGTCTCTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045355XLOC_045355Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073138-exon-scaffold_86-1491911889:1010952..1012354TCONS_00073138-exon-scaffold_86-1491911889:1010952..1012354Clytia hemisphaericaexon
TCONS_00073138-exon-scaffold_86-1510915933:1010952..1012354TCONS_00073138-exon-scaffold_86-1510915933:1010952..1012354Clytia hemisphaericaexon
TCONS_00073138-exon-scaffold_86-1575043694:1010952..1012354TCONS_00073138-exon-scaffold_86-1575043694:1010952..1012354Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073138-proteinTCONS_00073138-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_86supercontigscaffold_86:1010952..1012354 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.478263 0.645985 0.410318 0.29434 3.8868 3.30785 2.02542 2.85226 1.11911 1.18534 0.86228 1.01351 0.817037 0.957322 0.915143 0.897636 1.32202 0.647431 0.972532 1.33784 0.543358 0.36023 0.408825 0.202042 0.931938 0.954902 1.23125 1.2184 0.800511 0.712865
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013762Integrase-like_cat
IPR002104Integrase_catalytic
IPR023109Integrase_recombinase_N
IPR011010DNA_brk_join_enz
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006310DNA recombination
GO:0015074DNA integration
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
biological_process GO:0006310 DNA recombination
molecular_function GO:0003677 DNA binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073138 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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