TCONS_00073130 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073130
Unique NameTCONS_00073130
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length838

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073130 ID=TCONS_00073130|Name=TCONS_00073130|organism=Clytia hemisphaerica|type=transcript|length=838bp
TATGATGAAAACTGTCTTACCTGTATATATTAATAAGATGATTGAGCACT
TCACGAGGTTCTTTCGATGTCAAGGGCCGTAACTGCACGAACCGAGTAAA
AGCACACAAAACAGATAGTATATATTTATACGTTTTATCGCCAATGGTGA
TTGGATAGCTTTCCATGTTAACCAGATCAATTTGATTATGTGATTGAACC
GTTTTAGACACGACTGGTTGCAGCCTATTTTTGTTCTTAAAAAGGGGTTT
CTGTTGACAATGATCTTTATTTCTGTTTAACCATGTTTGAATATATCTTC
TCGGAATGCCGTGGAATTTGGTCTGTATTCTAATGTGCAATTTGTTTGCC
CCTTCGCCGTTGAGTCTCTCGTAAAAGTGTTTTACAATGGAtggtttttc
tgatttcttaGGGATAATCTTTTTTTCGGGGTCAATTAGTTCtttgtttg
ttaattttttcactGGGTTGTACACCTCGAGAGTCTTTACACCTTTTTTG
GATAAGTCAAAAATCATTCTCTCTTGAGCAGTGTAGAGATGAGGAAGTCC
TATTTCGTCGGGATTTTCGAAAATACGAAGAGCTTCATCATAAAACCGAT
CGTCGATTGCCTTTAATCTTGTTTGCTTCTGTTTTCCATTCTGACTTTTC
TTTGACGAATCTTTTTGTCCGTTTCCACTACCCTCTTGCTGTACTTCATT
TTCGCTGTCTCCACTATTACCACTATTTTCTGCATCCGCCtcaaaactgt
catcattagcGCAATTTATGATTAAAACcacataaaaaacaaaaaaatat
atagcaAAACTGTGAATggctttcattttcatctttac
Run BLAST on NCBI

protein sequence of TCONS_00073130-protein

>TCONS_00073130-protein ID=TCONS_00073130-protein|Name=TCONS_00073130-protein|organism=Clytia hemisphaerica|type=polypeptide|length=273bp
VKMKMKAIHSFAIYFFVFYVVLIINCANDDSFEADAENSGNSGDSENEVQ
QEGSGNGQKDSSKKSQNGKQKQTRLKAIDDRFYDEALRIFENPDEIGLPH
LYTAQERMIFDLSKKGVKTLEVYNPVKKLTNKELIDPEKKIIPKKSEKPS
IVKHFYERLNGEGANKLHIRIQTKFHGIPRRYIQTWLNRNKDHCQQKPLF
KNKNRLQPVVSKTVQSHNQIDLVNMESYPITIGDKTYKYILSVLCAFTRF
VQLRPLTSKEPREVLNHLINIYR
Run BLAST on NCBI

transcript from alignment at scaffold_86:953566..954403

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073130 ID=TCONS_00073130|Name=TCONS_00073130|organism=Clytia hemisphaerica|type=transcript|length=838bp|location=Sequence derived from alignment at scaffold_86:953566..954403 (Clytia hemisphaerica)
gtaaagatgaaaatgaaagccATTCACAGTTTtgctatatatttttttgt tttttatgtgGTTTTAATCATAAATTGCgctaatgatgacagttttgaGG CGGATGCAGAAAATAGTGGTAATAGTGGAGACAGCGAAAATGAAGTACAG CAAGAGGGTAGTGGAAACGGACAAAAAGATTCGTCAAAGAAAAGTCAGAA TGGAAAACAGAAGCAAACAAGATTAAAGGCAATCGACGATCGGTTTTATG ATGAAGCTCTTCGTATTTTCGAAAATCCCGACGAAATAGGACTTCCTCAT CTCTACACTGCTCAAGAGAGAATGATTTTTGACTTATCCAAAAAAGGTGT AAAGACTCTCGAGGTGTACAACCCagtgaaaaaattaacaaacaaaGAAC TAATTGACCCCGAAAAAAAGATTATCCCtaagaaatcagaaaaaccaTCC ATTGTAAAACACTTTTACGAGAGACTCAACGGCGAAGGGGCAAACAAATT GCACATTAGAATACAGACCAAATTCCACGGCATTCCGAGAAGATATATTC AAACATGGTTAAACAGAAATAAAGATCATTGTCAACAGAAACCCCTTTTT AAGAACAAAAATAGGCTGCAACCAGTCGTGTCTAAAACGGTTCAATCACA TAATCAAATTGATCTGGTTAACATGGAAAGCTATCCAATCACCATTGGCG ATAAAACGTATAAATATATACTATCTGTTTTGTGTGCTTTTACTCGGTTC GTGCAGTTACGGCCCTTGACATCGAAAGAACCTCGTGAAGTGCTCAATCA TCTTATTAATATATACAGGTAAGACAGTTTTCATCATA

Coding sequence (CDS) from alignment at scaffold_86:953566..954403

>TCONS_00073130 ID=TCONS_00073130|Name=TCONS_00073130|organism=Clytia hemisphaerica|type=CDS|length=822bp|location=Sequence derived from alignment at scaffold_86:953566..954403 (Clytia hemisphaerica)
gtaaagatgaaaatgaaagccATTCACAGTTTtgctatatatttttttgt
tttttatgtgGTTTTAATCATAAATTGCgctaatgatgacagttttgaGG
CGGATGCAGAAAATAGTGGTAATAGTGGAGACAGCGAAAATGAAGTACAG
CAAGAGGGTAGTGGAAACGGACAAAAAGATTCGTCAAAGAAAAGTCAGAA
TGGAAAACAGAAGCAAACAAGATTAAAGGCAATCGACGATCGGTTTTATG
ATGAAGCTCTTCGTATTTTCGAAAATCCCGACGAAATAGGACTTCCTCAT
CTCTACACTGCTCAAGAGAGAATGATTTTTGACTTATCCAAAAAAGGTGT
AAAGACTCTCGAGGTGTACAACCCagtgaaaaaattaacaaacaaaGAAC
TAATTGACCCCGAAAAAAAGATTATCCCtaagaaatcagaaaaaccaTCC
ATTGTAAAACACTTTTACGAGAGACTCAACGGCGAAGGGGCAAACAAATT
GCACATTAGAATACAGACCAAATTCCACGGCATTCCGAGAAGATATATTC
AAACATGGTTAAACAGAAATAAAGATCATTGTCAACAGAAACCCCTTTTT
AAGAACAAAAATAGGCTGCAACCAGTCGTGTCTAAAACGGTTCAATCACA
TAATCAAATTGATCTGGTTAACATGGAAAGCTATCCAATCACCATTGGCG
ATAAAACGTATAAATATATACTATCTGTTTTGTGTGCTTTTACTCGGTTC
GTGCAGTTACGGCCCTTGACATCGAAAGAACCTCGTGAAGTGCTCAATCA
TCTTATTAATATATACAGGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045347XLOC_045347Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073130-exon-scaffold_86-1491911889:953566..954403TCONS_00073130-exon-scaffold_86-1491911889:953566..954403Clytia hemisphaericaexon
TCONS_00073130-exon-scaffold_86-1510915933:953566..954403TCONS_00073130-exon-scaffold_86-1510915933:953566..954403Clytia hemisphaericaexon
TCONS_00073130-exon-scaffold_86-1575043694:953566..954403TCONS_00073130-exon-scaffold_86-1575043694:953566..954403Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073130-proteinTCONS_00073130-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_86supercontigscaffold_86:953566..954403 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0 0.228189 0.300531 0.362577 0.407329 0.23765 0.235495 0.171433 0.563465 0.150049 0.389567 0.448388 0.481189 0.211709 0.260394 0.419706 0.501934 0.27267 0.159599 0.129342 0.117591 0.121116 0.378325 0.386701 0.577777 0.250414 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073130 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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