TCONS_00073127 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073127
Unique NameTCONS_00073127
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length280

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073127 ID=TCONS_00073127|Name=TCONS_00073127|organism=Clytia hemisphaerica|type=transcript|length=280bp
AATTCTGAGAGCCGgatgttaaaatattttcttagatCCACTCTCATATT
TGCGGTtaaatattcttacaaaaacAAGCGCATAACAATCATAGCACATA
GATataaaaagtttgttttcttgGTCAGagatattcaatatttttgttta
tgatttttatatcaATCCATCTAAACATGAAATTGATAATGTAGCTGtca
atattttcctttttattatTTGGAAATATTGAACGTCGAACTTAAAAAGT
TCAAGATTTAAGAAGGCCCAAATCAAATCC
Run BLAST on NCBI

transcript from alignment at scaffold_86:891962..892241

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073127 ID=TCONS_00073127|Name=TCONS_00073127|organism=Clytia hemisphaerica|type=transcript|length=280bp|location=Sequence derived from alignment at scaffold_86:891962..892241 (Clytia hemisphaerica)
GGATTTGATTTGGGCCTTCTTAAATCTTGAACTTTTTAAGTTCGACGTTC AATATTTCCAAataataaaaaggaaaatattgaCAGCTACATTATCAATT TCATGTTTAGATGGATtgatataaaaatcataaacaaaaatattgaatat ctCTGACcaagaaaacaaactttttatATCTATGTGCTATGATTGTTATG CGCTTgtttttgtaagaatatttaACCGCAAATATGAGAGTGGatctaag aaaatattttaacatcCGGCTCTCAGAATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045344XLOC_045344Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073127-exon-scaffold_86-1491911889:891962..892241TCONS_00073127-exon-scaffold_86-1491911889:891962..892241Clytia hemisphaericaexon
TCONS_00073127-exon-scaffold_86-1510915933:891962..892241TCONS_00073127-exon-scaffold_86-1510915933:891962..892241Clytia hemisphaericaexon
TCONS_00073127-exon-scaffold_86-1575043694:891962..892241TCONS_00073127-exon-scaffold_86-1575043694:891962..892241Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_86supercontigscaffold_86:891962..892241 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0 0 0 0 0 0 0 0 0 0.32879 0.341452 1.96504 0.903765 0.371122 0.380388 0 0.549925 0 0 0 0 0 0 0 0 0 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073127 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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