TCONS_00073125 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073125
Unique NameTCONS_00073125
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length491

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073125 ID=TCONS_00073125|Name=TCONS_00073125|organism=Clytia hemisphaerica|type=transcript|length=491bp
TGAGGGTGTTTCGCTATCACGACATCGACAACTTTGACAATACAGCTATG
GGCAGCAATTCTGGAATGATCATTTGCTTCTGAAATAACAACAACATTTT
CGTGGATCAACTCATTGTTTCGCCTTATGTACAAGACGGCTGTGAAAATG
CTGAAAGTAGTGTGTCCAAAATAAGCCGATTGGCACTCGTCTTGTTGTTT
GTTTTCGTAACTCTCAGCATAATCCACATGCACGAGAATTGCATTCCCAG
GCATATTCTCCTTTAGTTTGCTATAAACAATGTATTGTTCATTTCGGATG
TGAATATGAAGCTTCAGTTCTTCAATTCTGGAGACCATGACTTCTctgat
tttgtcaaaaatgaCGGACTTTTGTGTTTTGGCAGCTTTTCCATCTACGT
TCACCCACTGATAAAACGTGATATCATCATCTTCCTCCGTCTCACTGTCT
GAGTTGtcgtcattggttgattttgcCGATGCGGAGTCTTG
Run BLAST on NCBI

protein sequence of TCONS_00073125-protein

>TCONS_00073125-protein ID=TCONS_00073125-protein|Name=TCONS_00073125-protein|organism=Clytia hemisphaerica|type=polypeptide|length=163bp
QDSASAKSTNDDNSDSETEEDDDITFYQWVNVDGKAAKTQKSVIFDKIRE
VMVSRIEELKLHIHIRNEQYIVYSKLKENMPGNAILVHVDYAESYENKQQ
DECQSAYFGHTTFSIFTAVLYIRRNNELIHENVVVISEANDHSRIAAHSC
IVKVVDVVIAKHP
Run BLAST on NCBI

transcript from alignment at scaffold_86:690866..691356

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073125 ID=TCONS_00073125|Name=TCONS_00073125|organism=Clytia hemisphaerica|type=transcript|length=491bp|location=Sequence derived from alignment at scaffold_86:690866..691356 (Clytia hemisphaerica)
CAAGACTCCGCATCGgcaaaatcaaccaatgacgaCAACTCAGACAGTGA
GACGGAGGAAGATGATGATATCACGTTTTATCAGTGGGTGAACGTAGATG
GAAAAGCTGCCAAAACACAAAAGTCCGtcatttttgacaaaatcagAGAA
GTCATGGTCTCCAGAATTGAAGAACTGAAGCTTCATATTCACATCCGAAA
TGAACAATACATTGTTTATAGCAAACTAAAGGAGAATATGCCTGGGAATG
CAATTCTCGTGCATGTGGATTATGCTGAGAGTTACGAAAACAAACAACAA
GACGAGTGCCAATCGGCTTATTTTGGACACACTACTTTCAGCATTTTCAC
AGCCGTCTTGTACATAAGGCGAAACAATGAGTTGATCCACGAAAATGTTG
TTGTTATTTCAGAAGCAAATGATCATTCCAGAATTGCTGCCCATAGCTGT
ATTGTCAAAGTTGTCGATGTCGTGATAGCGAAACACCCTCA

Coding sequence (CDS) from alignment at scaffold_86:690866..691356

>TCONS_00073125 ID=TCONS_00073125|Name=TCONS_00073125|organism=Clytia hemisphaerica|type=CDS|length=489bp|location=Sequence derived from alignment at scaffold_86:690866..691356 (Clytia hemisphaerica)
CAAGACTCCGCATCGgcaaaatcaaccaatgacgaCAACTCAGACAGTGA
GACGGAGGAAGATGATGATATCACGTTTTATCAGTGGGTGAACGTAGATG
GAAAAGCTGCCAAAACACAAAAGTCCGtcatttttgacaaaatcagAGAA
GTCATGGTCTCCAGAATTGAAGAACTGAAGCTTCATATTCACATCCGAAA
TGAACAATACATTGTTTATAGCAAACTAAAGGAGAATATGCCTGGGAATG
CAATTCTCGTGCATGTGGATTATGCTGAGAGTTACGAAAACAAACAACAA
GACGAGTGCCAATCGGCTTATTTTGGACACACTACTTTCAGCATTTTCAC
AGCCGTCTTGTACATAAGGCGAAACAATGAGTTGATCCACGAAAATGTTG
TTGTTATTTCAGAAGCAAATGATCATTCCAGAATTGCTGCCCATAGCTGT
ATTGTCAAAGTTGTCGATGTCGTGATAGCGAAACACCCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045342XLOC_045342Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073125-exon-scaffold_86-1491911889:690866..691356TCONS_00073125-exon-scaffold_86-1491911889:690866..691356Clytia hemisphaericaexon
TCONS_00073125-exon-scaffold_86-1510915933:690866..691356TCONS_00073125-exon-scaffold_86-1510915933:690866..691356Clytia hemisphaericaexon
TCONS_00073125-exon-scaffold_86-1575043694:690866..691356TCONS_00073125-exon-scaffold_86-1575043694:690866..691356Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073125-proteinTCONS_00073125-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_86supercontigscaffold_86:690866..691356 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.50323	0.490729	0.854675	0.696805	0.169659	0.268133	0.970473	1.66567	0.530078	0.393952	2.80412	0.418936	0.334683	0.173786	0	0	0.0944433	0.0968013	0	0.139945	0.121638	0.177992	0	0.131143	1.21567	1.4466	0	0	0.279273	0.284535
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073125 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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