TCONS_00073123 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073123
Unique NameTCONS_00073123
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length484

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073123 ID=TCONS_00073123|Name=TCONS_00073123|organism=Clytia hemisphaerica|type=transcript|length=484bp
TTTATACACTCTTGAGGGAATCCAATTTACCTTTTGTAGCAATGTCATTA
TTTTGAAGTCCCTCGGGAATTTCGAAGCTTCTttaaattttacgtttttt
cgaTTTGTTTACTTTCAACAAGACACCATCAGTGAGAGAGGTGAAGAGTC
TCTTTCTTGAAGCACTTCTTGCATTGCATTTTATGTACAATCGTACAATT
CTCTAAATTGATGTTCTGTTATCGGCTCCATTTTCGATAAGATTGAAGTT
CATCGTCAACTTTTCCTCGAAAAACAATCATTAGTGAAGCTCAACTTTTT
GAGATATTAATTCTTCGATAAGCCTCCGTCTTTGATGAGATTTTGTGGTC
CTTTCCATTTCATTTGCTCTTTATTTAGATTACTAGTACTGTATCCTCTA
ATTTCAATCGGAATAATCCCAAATTTGGGTTCTAGGTACAAATTGGTATG
GTCTTTtacaaaaaaccttttaaattttctgcaa
Run BLAST on NCBI

transcript from alignment at scaffold_86:500970..501453

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073123 ID=TCONS_00073123|Name=TCONS_00073123|organism=Clytia hemisphaerica|type=transcript|length=484bp|location=Sequence derived from alignment at scaffold_86:500970..501453 (Clytia hemisphaerica)
ttgcagaaaatttaaaaggttttttgtaAAAGACCATACCAATTTGTACC TAGAACCCAAATTTGGGATTATTCCGATTGAAATTAGAGGATACAGTACT AGTAATCTAAATAAAGAGCAAATGAAATGGAAAGGACCACAAAATCTCAT CAAAGACGGAGGCTTATCGAAGAATTAATATCTCAAAAAGTTGAGCTTCA CTAATGATTGTTTTTCGAGGAAAAGTTGACGATGAACTTCAATCTTATCG AAAATGGAGCCGATAACAGAACATCAATTTAGAGAATTGTACGATTGTAC ATAAAATGCAATGCAAGAAGTGCTTCAAGAAAGAGACTCTTCACCTCTCT CACTGATGGTGTCTTGTTGAAAGTAAACAAAtcgaaaaaacgtaaaattt aaAGAAGCTTCGAAATTCCCGAGGGACTTCAAAATAATGACATTGCTACA AAAGGTAAATTGGATTCCCTCAAGAGTGTATAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045340XLOC_045340Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073123-exon-scaffold_86-1491911889:500970..501453TCONS_00073123-exon-scaffold_86-1491911889:500970..501453Clytia hemisphaericaexon
TCONS_00073123-exon-scaffold_86-1510915933:500970..501453TCONS_00073123-exon-scaffold_86-1510915933:500970..501453Clytia hemisphaericaexon
TCONS_00073123-exon-scaffold_86-1575043694:500970..501453TCONS_00073123-exon-scaffold_86-1575043694:500970..501453Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_86supercontigscaffold_86:500970..501453 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
385.869 416.289 291.705 277.528 4.17545 4.53681 0.663451 0.155279 1.522 7.00233 1.56845 1.11696 0 0 0 0 0 0 0.274281 0 0.748405 0 193.184 170.387 0 0 9.19871 10.3835 82.9076 97.5997
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073123 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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