TCONS_00073123 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073123
Unique NameTCONS_00073123
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length484

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073123 ID=TCONS_00073123|Name=TCONS_00073123|organism=Clytia hemisphaerica|type=transcript|length=484bp
TTTATACACTCTTGAGGGAATCCAATTTACCTTTTGTAGCAATGTCATTA
TTTTGAAGTCCCTCGGGAATTTCGAAGCTTCTttaaattttacgtttttt
cgaTTTGTTTACTTTCAACAAGACACCATCAGTGAGAGAGGTGAAGAGTC
TCTTTCTTGAAGCACTTCTTGCATTGCATTTTATGTACAATCGTACAATT
CTCTAAATTGATGTTCTGTTATCGGCTCCATTTTCGATAAGATTGAAGTT
CATCGTCAACTTTTCCTCGAAAAACAATCATTAGTGAAGCTCAACTTTTT
GAGATATTAATTCTTCGATAAGCCTCCGTCTTTGATGAGATTTTGTGGTC
CTTTCCATTTCATTTGCTCTTTATTTAGATTACTAGTACTGTATCCTCTA
ATTTCAATCGGAATAATCCCAAATTTGGGTTCTAGGTACAAATTGGTATG
GTCTTTtacaaaaaaccttttaaattttctgcaa
Run BLAST on NCBI

transcript from alignment at scaffold_86:500970..501453

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073123 ID=TCONS_00073123|Name=TCONS_00073123|organism=Clytia hemisphaerica|type=transcript|length=484bp|location=Sequence derived from alignment at scaffold_86:500970..501453 (Clytia hemisphaerica)
ttgcagaaaatttaaaaggttttttgtaAAAGACCATACCAATTTGTACC
TAGAACCCAAATTTGGGATTATTCCGATTGAAATTAGAGGATACAGTACT
AGTAATCTAAATAAAGAGCAAATGAAATGGAAAGGACCACAAAATCTCAT
CAAAGACGGAGGCTTATCGAAGAATTAATATCTCAAAAAGTTGAGCTTCA
CTAATGATTGTTTTTCGAGGAAAAGTTGACGATGAACTTCAATCTTATCG
AAAATGGAGCCGATAACAGAACATCAATTTAGAGAATTGTACGATTGTAC
ATAAAATGCAATGCAAGAAGTGCTTCAAGAAAGAGACTCTTCACCTCTCT
CACTGATGGTGTCTTGTTGAAAGTAAACAAAtcgaaaaaacgtaaaattt
aaAGAAGCTTCGAAATTCCCGAGGGACTTCAAAATAATGACATTGCTACA
AAAGGTAAATTGGATTCCCTCAAGAGTGTATAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045340XLOC_045340Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073123-exon-scaffold_86-1491911889:500970..501453TCONS_00073123-exon-scaffold_86-1491911889:500970..501453Clytia hemisphaericaexon
TCONS_00073123-exon-scaffold_86-1510915933:500970..501453TCONS_00073123-exon-scaffold_86-1510915933:500970..501453Clytia hemisphaericaexon
TCONS_00073123-exon-scaffold_86-1575043694:500970..501453TCONS_00073123-exon-scaffold_86-1575043694:500970..501453Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_86supercontigscaffold_86:500970..501453 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
385.869	416.289	291.705	277.528	4.17545	4.53681	0.663451	0.155279	1.522	7.00233	1.56845	1.11696	0	0	0	0	0	0	0.274281	0	0.748405	0	193.184	170.387	0	0	9.19871	10.3835	82.9076	97.5997
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073123 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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