TCONS_00073121 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073121
Unique NameTCONS_00073121
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1173

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073121 ID=TCONS_00073121|Name=TCONS_00073121|organism=Clytia hemisphaerica|type=transcript|length=1173bp
TTACAATCTTAGTCGAATTGAATATTGTtggaaataatatttttatgttG
TTATGTTAGGGTCATCGAAAAATTCTCTCCCTTTGATTGATGTTTGTTGA
ATATAtattgaaaacttaaaaaaaaatgaacaatccgcaaaaatcatata
aaaatgaTCTTCACTTGAAATTTGGTCTAATCTGCATATCAGTTGAATCC
ACATTTGAATCTTACTCTTGCTGGCAAAAATGGAGAAGTCATCTGGATAC
ACCATTTTATCTCAAAATGTGACTGTCAATGAAACAAATGGCATTAAGAA
TGTAATGATTCTTATTGACATCATGctaccaaaacaaaacattgtCACAA
ATGTCTTCCCGTTACTAATGGTAACTTGTCAACTCGCCATGTTAATACGA
AGTAACAAGTTCAAAAAGATTACAGATTTGCTACTGGTTGTTTCATTCTT
GACAAATACCGcctctttttcatgtttttgcaTGACGTATTACCAACAAG
TGAACGATGCAAGTAGTTATATCTTGGCTACTGCACGGTATTTTCAGCTG
ACTGGATTGTCAAGTTTCACGTTTATCTCCATATCGATCTGTTTATCAAC
ATGTCAGATTCATTTGAGAGATAGAACATTATGGTTGATATTTACGGTAG
CTTCGATGATCCACCTACCAATATCTGGGTTTCCCATATGGTTGACTCAG
AACGAATCATCATCTATAATGAAGGGTTGCAACATGCAGGATGCACTTAT
TGTTGCATATATTGTGACCAATTTCCTGCTGATTGTCTTGTCCTACAAAC
GTTTAATTTCTTCTGTTAGGAAACATAAAATGACACTACCACTTTCCATA
CACGACGATAAAGTAAGACTTACTCAATTGAAAGCGACTGAACATATGCT
TTTGTTGATTGTTCCATATGTGATATGCTTCTTaccaaaattcattttta
attgaACGAAAATTTGTAtagtatttttaatatttcaaaaaagaccttga
aattgtagatttttcatttttctaagtTCTCTTATTCAGATACTTTATAT
ATAAAATCTGCTCCACTTTTTCCTAGacacattgggcttttccagaaaaa
aatcgtgcaccccctgttgaggaggtccatttccattccaagggggtaag
gtttgaaatgcagtggaattcca
Run BLAST on NCBI

protein sequence of TCONS_00073121-protein

>TCONS_00073121-protein ID=TCONS_00073121-protein|Name=TCONS_00073121-protein|organism=Clytia hemisphaerica|type=polypeptide|length=241bp
MEKSSGYTILSQNVTVNETNGIKNVMILIDIMLPKQNIVTNVFPLLMVTC
QLAMLIRSNKFKKITDLLLVVSFLTNTASFSCFCMTYYQQVNDASSYILA
TARYFQLTGLSSFTFISISICLSTCQIHLRDRTLWLIFTVASMIHLPISG
FPIWLTQNESSSIMKGCNMQDALIVAYIVTNFLLIVLSYKRLISSVRKHK
MTLPLSIHDDKVRLTQLKATEHMLLLIVPYVICFLPKFIFN
Run BLAST on NCBI

transcript from alignment at scaffold_86:443659..444831

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073121 ID=TCONS_00073121|Name=TCONS_00073121|organism=Clytia hemisphaerica|type=transcript|length=1173bp|location=Sequence derived from alignment at scaffold_86:443659..444831 (Clytia hemisphaerica)
tggaattccactgcatttcaaaccttacccccttggaatggaaatggacc tcctcaacagggggtgcacgatttttttctggaaaagcccaatgtgtCTA GGAAAAAGTGGAGCAGATTTTATATATAAAGTATCTGAATAAGAGAactt agaaaaatgaaaaatctacaatttcaaggtcttttttgaaatattaaaaa tactaTACAAATTTTCGTtcaattaaaaatgaattttggtAAGAAGCATA TCACATATGGAACAATCAACAAAAGCATATGTTCAGTCGCTTTCAATTGA GTAAGTCTTACTTTATCGTCGTGTATGGAAAGTGGTAGTGTCATTTTATG TTTCCTAACAGAAGAAATTAAACGTTTGTAGGACAAGACAATCAGCAGGA AATTGGTCACAATATATGCAACAATAAGTGCATCCTGCATGTTGCAACCC TTCATTATAGATGATGATTCGTTCTGAGTCAACCATATGGGAAACCCAGA TATTGGTAGGTGGATCATCGAAGCTACCGTAAATATCAACCATAATGTTC TATCTCTCAAATGAATCTGACATGTTGATAAACAGATCGATATGGAGATA AACGTGAAACTTGACAATCCAGTCAGCTGAAAATACCGTGCAGTAGCCAA GATATAACTACTTGCATCGTTCACTTGTTGGTAATACGTCAtgcaaaaac atgaaaaagaggCGGTATTTGTCAAGAATGAAACAACCAGTAGCAAATCT GTAATCTTTTTGAACTTGTTACTTCGTATTAACATGGCGAGTTGACAAGT TACCATTAGTAACGGGAAGACATTTGTGacaatgttttgttttggtagCA TGATGTCAATAAGAATCATTACATTCTTAATGCCATTTGTTTCATTGACA GTCACATTTTGAGATAAAATGGTGTATCCAGATGACTTCTCCATTTTTGC CAGCAAGAGTAAGATTCAAATGTGGATTCAACTGATATGCAGATTAGACC AAATTTCAAGTGAAGAtcatttttatatgatttttgcggattgttcattt ttttttaagttttcaataTATATTCAACAAACATCAATCAAAGGGAGAGA ATTTTTCGATGACCCTAACATAACaacataaaaatattatttccaACAAT ATTCAATTCGACTAAGATTGTAA

Coding sequence (CDS) from alignment at scaffold_86:443659..444831

>TCONS_00073121 ID=TCONS_00073121|Name=TCONS_00073121|organism=Clytia hemisphaerica|type=CDS|length=726bp|location=Sequence derived from alignment at scaffold_86:443659..444831 (Clytia hemisphaerica)
tcaattaaaaatgaattttggtAAGAAGCATATCACATATGGAACAATCA
ACAAAAGCATATGTTCAGTCGCTTTCAATTGAGTAAGTCTTACTTTATCG
TCGTGTATGGAAAGTGGTAGTGTCATTTTATGTTTCCTAACAGAAGAAAT
TAAACGTTTGTAGGACAAGACAATCAGCAGGAAATTGGTCACAATATATG
CAACAATAAGTGCATCCTGCATGTTGCAACCCTTCATTATAGATGATGAT
TCGTTCTGAGTCAACCATATGGGAAACCCAGATATTGGTAGGTGGATCAT
CGAAGCTACCGTAAATATCAACCATAATGTTCTATCTCTCAAATGAATCT
GACATGTTGATAAACAGATCGATATGGAGATAAACGTGAAACTTGACAAT
CCAGTCAGCTGAAAATACCGTGCAGTAGCCAAGATATAACTACTTGCATC
GTTCACTTGTTGGTAATACGTCAtgcaaaaacatgaaaaagaggCGGTAT
TTGTCAAGAATGAAACAACCAGTAGCAAATCTGTAATCTTTTTGAACTTG
TTACTTCGTATTAACATGGCGAGTTGACAAGTTACCATTAGTAACGGGAA
GACATTTGTGacaatgttttgttttggtagCATGATGTCAATAAGAATCA
TTACATTCTTAATGCCATTTGTTTCATTGACAGTCACATTTTGAGATAAA
ATGGTGTATCCAGATGACTTCTCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045338XLOC_045338Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073121-proteinTCONS_00073121-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073121-exon-scaffold_86-1491911889:443659..444831TCONS_00073121-exon-scaffold_86-1491911889:443659..444831Clytia hemisphaericaexon
TCONS_00073121-exon-scaffold_86-1510915933:443659..444831TCONS_00073121-exon-scaffold_86-1510915933:443659..444831Clytia hemisphaericaexon
TCONS_00073121-exon-scaffold_86-1575043694:443659..444831TCONS_00073121-exon-scaffold_86-1575043694:443659..444831Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_86supercontigscaffold_86:443659..444831 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.89293 1.48584 1.13442 0.759252 1.20819 0.679003 1.33365 1.26191 0.88181 0.47507 0.535763 1.02527 0.544735 0.750036 0.593438 0.230111 1.93935 2.23059 0.876422 1.13735 3.15146 2.77258 2.20765 2.58507 2.89745 3.94965 1.99051 0.869899 0.742789 0.585865
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR017452GPCR_Rhodpsn_7TM
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073121 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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