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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073121 ID=TCONS_00073121|Name=TCONS_00073121|organism=Clytia hemisphaerica|type=transcript|length=1173bp
TTACAATCTTAGTCGAATTGAATATTGTtggaaataatatttttatgttG
TTATGTTAGGGTCATCGAAAAATTCTCTCCCTTTGATTGATGTTTGTTGA
ATATAtattgaaaacttaaaaaaaaatgaacaatccgcaaaaatcatata
aaaatgaTCTTCACTTGAAATTTGGTCTAATCTGCATATCAGTTGAATCC
ACATTTGAATCTTACTCTTGCTGGCAAAAATGGAGAAGTCATCTGGATAC
ACCATTTTATCTCAAAATGTGACTGTCAATGAAACAAATGGCATTAAGAA
TGTAATGATTCTTATTGACATCATGctaccaaaacaaaacattgtCACAA
ATGTCTTCCCGTTACTAATGGTAACTTGTCAACTCGCCATGTTAATACGA
AGTAACAAGTTCAAAAAGATTACAGATTTGCTACTGGTTGTTTCATTCTT
GACAAATACCGcctctttttcatgtttttgcaTGACGTATTACCAACAAG
TGAACGATGCAAGTAGTTATATCTTGGCTACTGCACGGTATTTTCAGCTG
ACTGGATTGTCAAGTTTCACGTTTATCTCCATATCGATCTGTTTATCAAC
ATGTCAGATTCATTTGAGAGATAGAACATTATGGTTGATATTTACGGTAG
CTTCGATGATCCACCTACCAATATCTGGGTTTCCCATATGGTTGACTCAG
AACGAATCATCATCTATAATGAAGGGTTGCAACATGCAGGATGCACTTAT
TGTTGCATATATTGTGACCAATTTCCTGCTGATTGTCTTGTCCTACAAAC
GTTTAATTTCTTCTGTTAGGAAACATAAAATGACACTACCACTTTCCATA
CACGACGATAAAGTAAGACTTACTCAATTGAAAGCGACTGAACATATGCT
TTTGTTGATTGTTCCATATGTGATATGCTTCTTaccaaaattcattttta
attgaACGAAAATTTGTAtagtatttttaatatttcaaaaaagaccttga
aattgtagatttttcatttttctaagtTCTCTTATTCAGATACTTTATAT
ATAAAATCTGCTCCACTTTTTCCTAGacacattgggcttttccagaaaaa
aatcgtgcaccccctgttgaggaggtccatttccattccaagggggtaag
gtttgaaatgcagtggaattcca Run BLAST on NCBI protein sequence of TCONS_00073121-protein >TCONS_00073121-protein ID=TCONS_00073121-protein|Name=TCONS_00073121-protein|organism=Clytia hemisphaerica|type=polypeptide|length=241bp
MEKSSGYTILSQNVTVNETNGIKNVMILIDIMLPKQNIVTNVFPLLMVTC
QLAMLIRSNKFKKITDLLLVVSFLTNTASFSCFCMTYYQQVNDASSYILA
TARYFQLTGLSSFTFISISICLSTCQIHLRDRTLWLIFTVASMIHLPISG
FPIWLTQNESSSIMKGCNMQDALIVAYIVTNFLLIVLSYKRLISSVRKHK
MTLPLSIHDDKVRLTQLKATEHMLLLIVPYVICFLPKFIFN Run BLAST on NCBI transcript from alignment at scaffold_86:443659..444831 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00073121 ID=TCONS_00073121|Name=TCONS_00073121|organism=Clytia hemisphaerica|type=transcript|length=1173bp|location=Sequence derived from alignment at scaffold_86:443659..444831 (Clytia hemisphaerica)
tggaattccactgcatttcaaaccttacccccttggaatggaaatggacc
tcctcaacagggggtgcacgatttttttctggaaaagcccaatgtgtCTA
GGAAAAAGTGGAGCAGATTTTATATATAAAGTATCTGAATAAGAGAactt
agaaaaatgaaaaatctacaatttcaaggtcttttttgaaatattaaaaa
tactaTACAAATTTTCGTtcaattaaaaatgaattttggtAAGAAGCATA
TCACATATGGAACAATCAACAAAAGCATATGTTCAGTCGCTTTCAATTGA
GTAAGTCTTACTTTATCGTCGTGTATGGAAAGTGGTAGTGTCATTTTATG
TTTCCTAACAGAAGAAATTAAACGTTTGTAGGACAAGACAATCAGCAGGA
AATTGGTCACAATATATGCAACAATAAGTGCATCCTGCATGTTGCAACCC
TTCATTATAGATGATGATTCGTTCTGAGTCAACCATATGGGAAACCCAGA
TATTGGTAGGTGGATCATCGAAGCTACCGTAAATATCAACCATAATGTTC
TATCTCTCAAATGAATCTGACATGTTGATAAACAGATCGATATGGAGATA
AACGTGAAACTTGACAATCCAGTCAGCTGAAAATACCGTGCAGTAGCCAA
GATATAACTACTTGCATCGTTCACTTGTTGGTAATACGTCAtgcaaaaac
atgaaaaagaggCGGTATTTGTCAAGAATGAAACAACCAGTAGCAAATCT
GTAATCTTTTTGAACTTGTTACTTCGTATTAACATGGCGAGTTGACAAGT
TACCATTAGTAACGGGAAGACATTTGTGacaatgttttgttttggtagCA
TGATGTCAATAAGAATCATTACATTCTTAATGCCATTTGTTTCATTGACA
GTCACATTTTGAGATAAAATGGTGTATCCAGATGACTTCTCCATTTTTGC
CAGCAAGAGTAAGATTCAAATGTGGATTCAACTGATATGCAGATTAGACC
AAATTTCAAGTGAAGAtcatttttatatgatttttgcggattgttcattt
ttttttaagttttcaataTATATTCAACAAACATCAATCAAAGGGAGAGA
ATTTTTCGATGACCCTAACATAACaacataaaaatattatttccaACAAT
ATTCAATTCGACTAAGATTGTAA Coding sequence (CDS) from alignment at scaffold_86:443659..444831 >TCONS_00073121 ID=TCONS_00073121|Name=TCONS_00073121|organism=Clytia hemisphaerica|type=CDS|length=726bp|location=Sequence derived from alignment at scaffold_86:443659..444831 (Clytia hemisphaerica)
tcaattaaaaatgaattttggtAAGAAGCATATCACATATGGAACAATCA
ACAAAAGCATATGTTCAGTCGCTTTCAATTGAGTAAGTCTTACTTTATCG
TCGTGTATGGAAAGTGGTAGTGTCATTTTATGTTTCCTAACAGAAGAAAT
TAAACGTTTGTAGGACAAGACAATCAGCAGGAAATTGGTCACAATATATG
CAACAATAAGTGCATCCTGCATGTTGCAACCCTTCATTATAGATGATGAT
TCGTTCTGAGTCAACCATATGGGAAACCCAGATATTGGTAGGTGGATCAT
CGAAGCTACCGTAAATATCAACCATAATGTTCTATCTCTCAAATGAATCT
GACATGTTGATAAACAGATCGATATGGAGATAAACGTGAAACTTGACAAT
CCAGTCAGCTGAAAATACCGTGCAGTAGCCAAGATATAACTACTTGCATC
GTTCACTTGTTGGTAATACGTCAtgcaaaaacatgaaaaagaggCGGTAT
TTGTCAAGAATGAAACAACCAGTAGCAAATCTGTAATCTTTTTGAACTTG
TTACTTCGTATTAACATGGCGAGTTGACAAGTTACCATTAGTAACGGGAA
GACATTTGTGacaatgttttgttttggtagCATGATGTCAATAAGAATCA
TTACATTCTTAATGCCATTTGTTTCATTGACAGTCACATTTTGAGATAAA
ATGGTGTATCCAGATGACTTCTCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00073121-exon-scaffold_86-1491911889:443659..444831 | TCONS_00073121-exon-scaffold_86-1491911889:443659..444831 | Clytia hemisphaerica | exon |
| TCONS_00073121-exon-scaffold_86-1510915933:443659..444831 | TCONS_00073121-exon-scaffold_86-1510915933:443659..444831 | Clytia hemisphaerica | exon |
| TCONS_00073121-exon-scaffold_86-1575043694:443659..444831 | TCONS_00073121-exon-scaffold_86-1575043694:443659..444831 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_86 | supercontig | scaffold_86:443659..444831 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR017452 | GPCR_Rhodpsn_7TM |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0016021 |
integral component of membrane |
Blast
The following BLAST results are available for this feature:
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