TCONS_00073117 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073117
Unique NameTCONS_00073117
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1122

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073117 ID=TCONS_00073117|Name=TCONS_00073117|organism=Clytia hemisphaerica|type=transcript|length=1122bp
NNACATGAAGATTTCGCCTCCAGGAGATATTTTGAGCCAGTTAAAAGCCA
AATTTAGGCAATATAACTTGGCAGCCTTCTACCAGTAGGACTGACATTCC
ATCAGATCTGTACCAAAAGAGTGTTAATTTCCTTCAATATGATATCTAAG
CCCATTCGCTTTAAGTGAGCACTCTTTTTTAACACCATATGAAAAGTATT
CTTAAACCAGTTAGTCTaatcagtagcgtggtgggttgAATAAAATTCGG
GCAAATCGGGGAGGCAATTTTAGaaggttttgattttggcgttccctatg
aaaagtaaatatctttttaaaaataatgcgagcgaagcaagcactatatt
ttggggtattttctctttttttagccAAAAATTGGCGTAAGGTGTAAAGG
AGCAAAGGGGTCCCGAAAGTAGTAATCAGAGGCGTCTTTTTGCACCCTTT
GtattttggcgcccctttgAAAAACCCCCACATAGTTTCCACTTGGTAAC
AAAAGCGAGTTCATACTTAAaaagcgaatggactttaaAGTAAATCTTGA
ACCTTCTATTATATCAATCACTGCAATGAAAAACAAATTAGTCAATTTTA
GGCCTCCATCCATCCTTAAATCGATTCAATttcttgatttcaaatttggt
caaatttaagtctctcatttcttcttcatcaaggTGAAGAAATAGTTCAC
CATCAATTTGATTCTCAACAAAAACATCCATATGTTTCTCCATGTTtaag
tttttcaatttctcgGCAAGTTGTTGGACACTCAATTCCCTAATCTCTTT
ATACTTATCAATAGCAGGTCCACCGTTAAGGTGATTCTCTGAATGACCAT
TAATGCTGGTCATAGAGCCATTATGACTCCTGTTAAAGCCGTTGATGCCA
TTCATAGGGTACTGGACCGACGAGCTTCGACGTTGTTGAGCCAACGGGTC
CATAGCTGGGTTCATCGGTGTCGCGAAATTAGAATGGCCATTCATGGAGC
CACGTTTTTCCATTGATGAATAATCTATAGGCTGGTTCATTGGAGTCGCG
AAATTTGTTGGGCCACCATTCATCGAGTTTCGTTTCTCCATATGTCGTGT
TGAGTTCCCTTGTGGATTATAA
Run BLAST on NCBI

protein sequence of TCONS_00073117-protein

>TCONS_00073117-protein ID=TCONS_00073117-protein|Name=TCONS_00073117-protein|organism=Clytia hemisphaerica|type=polypeptide|length=177bp
YNPQGNSTRHMEKRNSMNGGPTNFATPMNQPIDYSSMEKRGSMNGHSNFA
TPMNPAMDPLAQQRRSSSVQYPMNGINGFNRSHNGSMTSINGHSENHLNG
GPAIDKYKEIRELSVQQLAEKLKNLNMEKHMDVFVENQIDGELFLHLDEE
EMRDLNLTKFEIKKLNRFKDGWRPKID
Run BLAST on NCBI

transcript from alignment at scaffold_86:259812..260933

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073117 ID=TCONS_00073117|Name=TCONS_00073117|organism=Clytia hemisphaerica|type=transcript|length=1122bp|location=Sequence derived from alignment at scaffold_86:259812..260933 (Clytia hemisphaerica)
TTATAATCCACAAGGGAACTCAACACGACATATGGAGAAACGAAACTCGA TGAATGGTGGCCCAACAAATTTCGCGACTCCAATGAACCAGCCTATAGAT TATTCATCAATGGAAAAACGTGGCTCCATGAATGGCCATTCTAATTTCGC GACACCGATGAACCCAGCTATGGACCCGTTGGCTCAACAACGTCGAAGCT CGTCGGTCCAGTACCCTATGAATGGCATCAACGGCTTTAACAGGAGTCAT AATGGCTCTATGACCAGCATTAATGGTCATTCAGAGAATCACCTTAACGG TGGACCTGCTATTGATAAGTATAAAGAGATTAGGGAATTGAGTGTCCAAC AACTTGCcgagaaattgaaaaacttaAACATGGAGAAACATATGGATGTT TTTGTTGAGAATCAAATTGATGGTGAACTATTTCTTCAccttgatgaaga agaaatgagagacttaaatttgaccaaatttgaaatcaagaaATTGAATC GATTTAAGGATGGATGGAGGCCTAAAATTGACTAATTTGTTTTTCATTGC AGTGATTGATATAATAGAAGGTTCAAGATTTACTttaaagtccattcgct ttTTAAGTATGAACTCGCTTTTGTTACCAAGTGGAAACTATGTGGGGGTT TTTcaaaggggcgccaaaataCAAAGGGTGCAAAAAGACGCCTCTGATTA CTACTTTCGGGACCCCTTTGCTCCTTTACACCTTACGCCAATTTTTggct aaaaaaagagaaaataccccaaaatatagtgcttgcttcgctcgcattat ttttaaaaagatatttacttttcatagggaacgccaaaatcaaaaccttC TAAAATTGCCTCCCCGATTTGCCCGAATTTTATTcaacccaccacgctac tgattAGACTAACTGGTTTAAGAATACTTTTCATATGGTGTTAAAAAAGA GTGCTCACTTAAAGCGAATGGGCTTAGATATCATATTGAAGGAAATTAAC ACTCTTTTGGTACAGATCTGATGGAATGTCAGTCCTACTGGTAGAAGGCT GCCAAGTTATATTGCCTAAATTTGGCTTTTAACTGGCTCAAAATATCTCC TGGAGGCGAAATCTTCATGTNN

Coding sequence (CDS) from alignment at scaffold_86:259812..260933

>TCONS_00073117 ID=TCONS_00073117|Name=TCONS_00073117|organism=Clytia hemisphaerica|type=CDS|length=534bp|location=Sequence derived from alignment at scaffold_86:259812..260933 (Clytia hemisphaerica)
TATAATCCACAAGGGAACTCAACACGACATATGGAGAAACGAAACTCGAT
GAATGGTGGCCCAACAAATTTCGCGACTCCAATGAACCAGCCTATAGATT
ATTCATCAATGGAAAAACGTGGCTCCATGAATGGCCATTCTAATTTCGCG
ACACCGATGAACCCAGCTATGGACCCGTTGGCTCAACAACGTCGAAGCTC
GTCGGTCCAGTACCCTATGAATGGCATCAACGGCTTTAACAGGAGTCATA
ATGGCTCTATGACCAGCATTAATGGTCATTCAGAGAATCACCTTAACGGT
GGACCTGCTATTGATAAGTATAAAGAGATTAGGGAATTGAGTGTCCAACA
ACTTGCcgagaaattgaaaaacttaAACATGGAGAAACATATGGATGTTT
TTGTTGAGAATCAAATTGATGGTGAACTATTTCTTCAccttgatgaagaa
gaaatgagagacttaaatttgaccaaatttgaaatcaagaaATTGAATCG
ATTTAAGGATGGATGGAGGCCTAAAATTGACTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045334XLOC_045334Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073117-proteinTCONS_00073117-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073117-exon-scaffold_86-1491911889:259812..260933TCONS_00073117-exon-scaffold_86-1491911889:259812..260933Clytia hemisphaericaexon
TCONS_00073117-exon-scaffold_86-1510915933:259812..260933TCONS_00073117-exon-scaffold_86-1510915933:259812..260933Clytia hemisphaericaexon
TCONS_00073117-exon-scaffold_86-1575043694:259812..260933TCONS_00073117-exon-scaffold_86-1575043694:259812..260933Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_86supercontigscaffold_86:259812..260933 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.194292 0.0378931 0.087995 0 0.733639 0.496912 7.14409 7.71716 7.13846 10.8455 8.30682 5.07238 15.4544 9.99639 12.9863 11.9224 4.20061 8.01299 7.35271 7.95343 3.53163 5.66261 2.76237 3.60506 7.59314 8.19161 66.3369 64.6551 52.6184 48.3807
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001660SAM
IPR013761SAM/pointed
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073117 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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