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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073114 ID=TCONS_00073114|Name=TCONS_00073114|organism=Clytia hemisphaerica|type=transcript|length=2004bp
acataacccgattaCATTCCCTACTAAGTTGCGCGTCCTGCttggttttc
atacaaacgctCGATTGGAAGTAATATTCACCACAAGACAATGAAAAATT
GGCGGGAATAGCGCACCTCGCTGAAtgtaaaaatagattttatttttgac
ataatcattactctcgatgtgtttgtacgagttccaatcccatcaacctt
ttgcgttaatctcttttgcacgttaatagCATACCGTCGCGAATCTAACA
ATAGccattgatttttatgtttgactgaaatttaatcccatcaccctttg
cgtttattacgcttgaacgcaaattacactcaattacaaagaaagACGAA
GCGCTAttgcatcgtttgacaaaagatatataacagcttgcacgtatcct
ttaattgagccgcgttgaattgtgggattgcaactcgtacaaatgtcaaa
aaaagtgaaaagtaataattatgacgtatgcattGCGGACCACtattaat
tttggcaaatgacagcgtaaatctgttctattttgccttatttgaagctt
tttttgtgaactcaagaagttatttaGGCAAATTAAGGTAGATTCCATCC
GTCATCCAAAATGTGCTGCATATTTATAGGCTTCAGTTTTTCTTCCCTGG
GAAAGTTAGGAAGTTCGCCTCTGGCCCCTTCACCTTGAACTCAATGGAGT
GACCAAGCCAACTGTTcgaatacacaggttgcaaaattagaatctgaaga
caaatcacgcttttactcgaaatttttatgtgctatTTATTTATTGGTTC
GAATGTTTTGACACTAATAAatttatcagctgtaagttgtaaagcaagta
acatgagaataaaatcacgtgaactttttcgagtaatcacatgttttgac
tgcattgatataattttgcaacccgtgcaATACACGGTTTCAGTGCCGTA
GTCAACCCTGTTGTCCACGGTGGTGGTGAGGAGCGGGGTTATTCTATAGT
TTGCACATGATAAATAACAAATGTTAAAACATATTggatttttcaggatt
tcaaaGGTAAATTCCTTTTCACTGAAAGAGCGCAGGGATTTAGAAAAGCC
AAGTTGTAGATTGAAggcattttaaaaacttttttagttgGTCAGTTTGA
ATGGAATATTTTAATGGGCGTTGAGCTCGGGAAGGTTACTTTTGCTTTGT
TTAGTTTAGGCTTATTATTTCATTGGGTAATACAAAAATAAGGTCATGTA
ACTAATCTGATCGACGGCTCActtgataatgtttaagcttATGTCAGCAT
TTCGGAGGGAGTTCTCAAGCACTGTTTCAAAAGTTTAgcaatttcaactt
ttcgaatcCACTTTTCCTGTCTGACAAAAAACAtcataaattaaaagaaa
aattgaaagaacaTAATAAATacataacaaaataaaaaatactgatgtaa
tccagaaaaaaatgcaaatataAGCCCCCCTAACACTCTCTAGAGCTGCT
ATTTTTAGTAGAAAACAAAGGAAAACTTAATAATCTTCGTCTTTAGCTTA
AAAGAATCGAATATTCTTAAAGAAAAACCTGAGTGAGTTTACCTCCGAAT
TAAATTCATAATGTTAAGAGTATTCTACAAATTGAAGACCTAGGAACTAA
TAAAATAACTAAAAACTTAAATATATAAAGAAAAAAATCCGAAAAAAATA
TTTGTCATCCTCGGTTAAAAATTTCACTACCCCATGAAGAATCATATAGA
ACCTGTTTTGAAAATCTTTAGAGCAAAGCCTTTAAAAAAGGTTTTTACTC
GAAGTATTTTTATCAAACTAACAGAATTCTAACTAATTAAATTTTATAAA
TCCTAAATAAACCTAAGAAATTATTATTGAAAAATACCAAAAAAGAAAGA
TACATAATCTTGGTTTTACTTTTTACTAAACTATTTTACATTGCCATTTT
TTAAGACTAAAACATAATACATTAAACAATTAGTATACACCAGAAAAAAT
ATTA Run BLAST on NCBI transcript from alignment at scaffold_86:224107..226110 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00073114 ID=TCONS_00073114|Name=TCONS_00073114|organism=Clytia hemisphaerica|type=transcript|length=2004bp|location=Sequence derived from alignment at scaffold_86:224107..226110 (Clytia hemisphaerica)
TAATATTTTTTCTGGTGTATACTAATTGTTTAATGTATTATGTTTTAGTC
TTAAAAAATGGCAATGTAAAATAGTTTAGTAAAAAGTAAAACCAAGATTA
TGTATCTTTCTTTTTTGGTATTTTTCAATAATAATTTCTTAGGTTTATTT
AGGATTTATAAAATTTAATTAGTTAGAATTCTGTTAGTTTGATAAAAATA
CTTCGAGTAAAAACCTTTTTTAAAGGCTTTGCTCTAAAGATTTTCAAAAC
AGGTTCTATATGATTCTTCATGGGGTAGTGAAATTTTTAACCGAGGATGA
CAAATATTTTTTTCGGATTTTTTTCTTTATATATTTAAGTTTTTAGTTAT
TTTATTAGTTCCTAGGTCTTCAATTTGTAGAATACTCTTAACATTATGAA
TTTAATTCGGAGGTAAACTCACTCAGGTTTTTCTTTAAGAATATTCGATT
CTTTTAAGCTAAAGACGAAGATTATTAAGTTTTCCTTTGTTTTCTACTAA
AAATAGCAGCTCTAGAGAGTGTTAGGGGGGCTtatatttgcatttttttc
tggattacatcagtattttttattttgttatgtATTTATTAtgttctttc
aatttttcttttaatttatgaTGTTTTTTGTCAGACAGGAAAAGTGgatt
cgaaaagttgaaattgcTAAACTTTTGAAACAGTGCTTGAGAACTCCCTC
CGAAATGCTGACATaagcttaaacattatcaagTGAGCCGTCGATCAGAT
TAGTTACATGACCTTATTTTTGTATTACCCAATGAAATAATAAGCCTAAA
CTAAACAAAGCAAAAGTAACCTTCCCGAGCTCAACGCCCATTAAAATATT
CCATTCAAACTGACcaactaaaaaagtttttaaaatgccTTCAATCTACA
ACTTGGCTTTTCTAAATCCCTGCGCTCTTTCAGTGAAAAGGAATTTACCt
ttgaaatcctgaaaaatccAATATGTTTTAACATTTGTTATTTATCATGT
GCAAACTATAGAATAACCCCGCTCCTCACCACCACCGTGGACAACAGGGT
TGACTACGGCACTGAAACCGTGTATtgcacgggttgcaaaattatatcaa
tgcagtcaaaacatgtgattactcgaaaaagttcacgtgattttattctc
atgttacttgctttacaacttacagctgataaatTTATTAGTGTCAAAAC
ATTCGAACCAATAAATAAatagcacataaaaatttcgagtaaaagcgtga
tttgtcttcagattctaattttgcaacctgtgtattcgAACAGTTGGCTT
GGTCACTCCATTGAGTTCAAGGTGAAGGGGCCAGAGGCGAACTTCCTAAC
TTTCCCAGGGAAGAAAAACTGAAGCCTATAAATATGCAGCACATTTTGGA
TGACGGATGGAATCTACCTTAATTTGCCtaaataacttcttgagttcaca
aaaaaagcttcaaataaggcaaaatagaacagatttacgctgtcatttgc
caaaattaataGTGGTCCGCaatgcatacgtcataattattacttttcac
tttttttgacatttgtacgagttgcaatcccacaattcaacgcggctcaa
ttaaaggatacgtgcaagctgttatatatcttttgtcaaacgatgcaaTA
GCGCTTCGTctttctttgtaattgagtgtaatttgcgttcaagcgtaata
aacgcaaagggtgatgggattaaatttcagtcaaacataaaaatcaatgg
CTATTGTTAGATTCGCGACGGTATGctattaacgtgcaaaagagattaac
gcaaaaggttgatgggattggaactcgtacaaacacatcgagagtaatga
ttatgtcaaaaataaaatctatttttacaTTCAGCGAGGTGCGCTATTCC
CGCCAATTTTTCATTGTCTTGTGGTGAATATTACTTCCAATCGagcgttt
gtatgaaaaccaaGCAGGACGCGCAACTTAGTAGGGAATGtaatcgggtt
atgt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00073114-exon-scaffold_86-1491911889:224107..226110 | TCONS_00073114-exon-scaffold_86-1491911889:224107..226110 | Clytia hemisphaerica | exon |
| TCONS_00073114-exon-scaffold_86-1510915933:224107..226110 | TCONS_00073114-exon-scaffold_86-1510915933:224107..226110 | Clytia hemisphaerica | exon |
| TCONS_00073114-exon-scaffold_86-1575043694:224107..226110 | TCONS_00073114-exon-scaffold_86-1575043694:224107..226110 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_86 | supercontig | scaffold_86:224107..226110 . |
Blast
The following BLAST results are available for this feature:
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