TCONS_00073086 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073086
Unique NameTCONS_00073086
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1950

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073086 ID=TCONS_00073086|Name=TCONS_00073086|organism=Clytia hemisphaerica|type=transcript|length=1950bp
CTAATTATAAATATGTAATATGGTATAAAATAGTTTGATAGAATCTTATA
AAATTTCATAAAGGGAAGGATACAAAACTATCAATATTAATAATGTTCGC
TTCATATTAGgtgattttgatgaatttccTTTTTGCTTTTCCTCCATTTT
TCcaatgtttttcaaatattggTGGAAAATGTATTCAGTAAGCAACTAGT
TTTCAATACCCAAATAATTAAATAATGAAGACGGAAGATTTGCTTTAAAT
AATTCATTATAAGTAAACGATGTCAAAACAGCAAATCTTGACAAATATtt
caaagatttattttttttttcttttcaatatcatTGCAAGCCATTTTAAA
ACATAACGGTCCAAGTCTCGTAGCATTTTGAAGATTATCTTTACGAAAAG
TCATCCCAATTTCTTCATTGTTCCAATTTACAGAATAGCAAGGATGTGAA
TTTTCAGGAGAAATAATTTGGTGAACAACTTCTGTAGTAGATAAATCAAT
TGCCATGTAAAATTCAGGGTGAAATACATCCCTTGTGGTACAGTAAAATG
GCATAACAAGGCGATCGAACTTCTTGATAGGGGCACGCACTCTCAAGTCC
CTATCTCTATATTCTACTGGTACTTTCACGCAGGGAATGaagttttttgt
ttcatttattGACAAAAGAACCCCATTCTCCAGTTTTAAAACTCTTAATT
CAAGGTCCTCCAATTCGCCATAACCATTATAAAGAAATATGTAATTTGAA
TGTTTAAGATCAACAACATTAAACATCCACGATTCAATGTATTCTAAATC
ATACGAATATAAAAAATTACCAGAATAATCACATTCAAGGATCTTTAAGT
TTATCATATCTTCACTATCTTCAATATaagaccttttaaagaaaaatatt
ttgtccttAGTATATTCCCTTCTCGCAAATACTGATCCACCAGCGGTTTC
GAAATCTATAACCAATCTTCTCTCGTGACAAAGTTGATCTTTTTGTATCT
TGATAAAATCCAGATAGTTGTATTTCTCGTCCTGGTTACTCTCATAATAC
TTAGTAAAATAACTGCTTATAAGTAAAGTGGGATTCTCGTGGCCAAGAAA
TTCTGCATATTTACAAGTTATCGAGTTGAATAATTGATCATATGTCAAAG
ACAGATCTGGAGTGGATGCTtcgtcatcaatttttgaatCATGATGCTGC
AAATCTCTATTTAAATCAGCTTTAAGTGACTCTGGTGAACCATGTTCCCT
GTTTAGATTTTGACTTTGTGATTCTGAGGGCAATTCAAAAAACGATGTAG
GTCTACTAGATTCATCGTTCGAATCTTGATTGTACGAATCTTCAAAGATA
CTAGCCATAAAAGATAGATCTGGTGAATTTTGGGGTTCTGAAAAATCCTC
AGGATTATAAAATGTTGGTGTTCTTGGTGGTGATTCTGGTTCAGTTGATT
CAggaatttttaaatctttgccATTAAGCTCGTCAAAAAGATCAACAATG
TTGTAATTATAAAGATCCATTACAGTTTCATGACGTTCGTTTGTTGGGTA
TGTTTGTATGATATGAACCAATACACCACTGGTtgaattgaaaacatttt
ctcgGTGACCATCTAGTTCAGTTTTTGGTAAGCTGATAATTATTCGACTG
TGTACCCATTGGAATTCTTCTATATCGAATTTGATCACGTGAACgatatt
ttcttccttttcttcttgtAGGATCAAATAATATTTACCAGTGTGGAAGA
ACCCTTGCGCATGCTCGTTGGAGTAGCTTGAAGTGCTTGATACAGAAAAA
TTACCCAATAACAAAGGTGGAATATCTCTATTTTCGTATTCACGTGGAAT
GAACCATGATTTCTTAATGCTGTTATACATTGTTATCTGTTTCTTTTTAC
CTTAAAAATAGAGGAAAGTGATATTGAATTCAATGTTCAGTGTCACAGTC
Run BLAST on NCBI

transcript from alignment at scaffold_86:1396082..1402681-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073086 ID=TCONS_00073086|Name=TCONS_00073086|organism=Clytia hemisphaerica|type=transcript|length=6600bp|location=Sequence derived from alignment at scaffold_86:1396082..1402681- (Clytia hemisphaerica)
CTAATTATAAATATGTAATATGGTATAAAATAGTTTGATAGAATCTTATA AAATTTCATAAAGGGAAGGATACAAAACTATCAATATTAATAATGTTCGC TTCATATTAGGTGATTTTGATGAATTTCCTTTTTGCTTTTCCTCCATTTT TCCAATGTTTTTCAAATATTGGTGGAAAATGTATTCAGTAAGCAACTAGT TTTCAATACCCAAATAATTAAATAATGAAGACGGAAGATTTGCTTTAAAT AATTCATTATAAGTAAACGATGTCAAAACAGCAAATCTTGACAAATATTT CAAAGATTTATTTTTTTTTTCTTTTCAATATCATTGCAAGCCATTTTAAA ACATAACGGTCCAAGTCTCGTAGCATTTTGAAGATTATCTTTACGAAAAG TCATCCCAATTTCTTCATTGTTCCAATTTACAGAATAGCAAGGATGTGAA TTTTCAGGAGAAATAATTTGGTGAACAACTTCTGTAGTAGATAAATCAAT TGCCATGTAAAATTCAGGGTGAAATACATCCCTTGTGGTACAGTAAAATG GCATAACAAGGCGATCGAACTTCTTGATAGGGGCACGCACTCTCAAGTCC CTATCTCTATATTCTACTGGTACTTTCACGCAGGGAATGAAGTTTTTTGT TTCATTTATTGACAAAAGAACCCCATTCTCCAGTTTTAAAACTCTTAATT CAAGGTCCTCCAATTCGCCATAACCATTATAAAGAAATATGTAATTTGAA TGTTTAAGATCAACAACATTAAACATCCACGATTCAATGTATTCTAAATC ATACGAATATAAAAAATTACCAGAATAATCACATTCAAGGATCTTTAAGT TCATTATTTCTTCACTANATTCAATGTATTCCAGATTATACGAATATAAA AAATTACCAGAATAATCACATTCGAGGATCTTTAGGTTCATTATATCTTC ACTGTCTTCAATATAAGACCTTTTAAAGAAAAATATTTTGTCTTTAGTAT ATTCCCTTCTCGCAATTACTGATCCACCAACCGTATCGAAATCTAAGACC AATCTTTTCTCGTGACAAAGTTGATCTTTTTGTATCTTGATAAAATCCAG ATAGTTGTATCTCTCATCCTGGTTACTCTCATAATACGGAGTAAAATAAC TGCTTATAAGTAAAGTGGCATTCTCGTGGCCAAGAAATTTTGCATATTTA CAAGTTATAGAGTTAAATAACTGATCATATGCCAAAGACAGATCTGGAGT GGATGCTTCGTCGTCAATCTTTGAATCTTGATGATGCAAATCTCTATTTA AATCAGCTTTAAGTGACTCTGATGAACCATGTTCCATGTTTAGATTTTGA TTTTGTGATTCTGAGGGCAATTCAAAAAACGATGTAGGTCTACTAGATTC ATCGTTTGAATCTTGATCGTACGAATCTTCAAAGATACTAGTCATAAAAG ATAGATCTGGTGAATTTTGGGGTTCTGAAAAATCCTCAGGATTATAAAAT GTCGGTTTTCTTGGTGGTGATTCTGGTTCAGTTGATTCAGGAATTTTTAC ATCTTTACCATTAAGCTCGTCAAAAAGATCAACAATGTTGTAATTATAAA GATCCATTACAGTTTCTNTCGTCAAAAAGATCAACAATGTTGTAAGTATA AAGATCCATTACAGTTTCATGACGTTCGTTTGTTGGGTATGTTTGTATGA TATGAACCAATACACCACTGGTTGAATTGAAAACATTTTCTCGGTGACAT TCGAGTTCAGTTTCTGGTAATCTGATAATAATTCGACTGTGCAACCATTG GAATTCTTCTATATCGAATTTGATCACGTGAACGATATTTTCTTCATTTT CTTCTTGTAGGAACAAATAATATTTACCAGTGTGGAAGAGNAATCAATGG AATATGAATATAAAAATTTACCCGAGTAATCATATTCTAAGATTGTTGAC TTAATGGTATTGTGTTTGTTATCGATCCTTTCAAAATAGATCTTATGCTT GGTAAAATATCGAAAAACAAAAGAATTTTCCAACGGTCTGTCTAATTCTA TTACCAGTCTTTTTTCTTGCTTTATTTGATGTAGCTCGATGTTTAAAAAA TCCAAACATAAACTTCGATATGATACGAGTGAAGGGTCGTTAGCTTCATC AACTGTTCGTTGAGAAAATGCTGAAATGATAAGTTTTATATTGTTTCCAA TGATATCNTTCAGTGTCACAGTCAAAATAATACATCGGTGAAAAAGCGAA AAAAAATAGGCAAAATTTGTACGTAAGGTGGAAAAGTGAAAATTTACGTA TTCACACTCAAAAAGATTTTTGAATTCGAAAAGTTATGACGAAGGTTTTA TAAAAACCAACATAAGGATTCGCTATTACGTTTTTCTATCTGCGTGTCCT AGCTGTCTGACTTTCGTCCCTCGGACCCTTAGCAAATTCGCTTCCATCAA TTGATGNAACCATAAAGGTCGATAGTAAAATATTCCCTGTCGCTAGAATA ACGTTCGATTGTATGAAGAAGAAAACCAACATCTGGATAAAAACAAAGCT GCTCGTAATTATAATATCCAACGCAGGAACGAAGTTTAACGGTCACAATG CGTTGAAGAAATTTAGAAAAACTTTTACAGAATTCGATAATATGAATACG CACAGTATCGGATANTTTTTCAATAAATTATCCTTCTTGTAAACTTACAA TTTTCATTTTTCAATTCCCAAATAGTCAAACAATATCGATGGCAAATCCG CTTCCATTAATTGATGATAATTGAACGATGTCAAAACTTTCAATTTANGG TCACAACGCGTTGAAGAAATTTAGAATAACTTTTATAGAATTCGATAATA TGAATACGCACGGTATCGGTTTTTTTTGGATCTTCCTTAGCTAAAAAGTA TTCACCAGTGTGGTAAAATCCCATCTCATCTTTATCAAATGGCTCAAATC CGATGAATAGTGGTTGTATATCCTTGGCTTTGAAGTCAGGTGGAATGAAC CATGATTTCTTGTCGTCAATCATCGCAATTTTTTTAATGTTTTTGATTTT AATGTTTTTTTGTAACTGTAAAAGAATGACAAAATGTTATAATTCACAAG AAAGTACATGCAATTTTATCACGAGCTAAAGAAAAATGGTGGAATTATAG AAACTTGTAGTGATTTTAACCAGATATTTTAACCGATTTCCTCAACTTAA TTGGCCTTACTTTATACTTTCAATGCAGAGATATCTAACAAGGGTACTCC TACGCTTGTGTTCCTGATACCCGTCCGATGTTTGATAGGTGTTTGATAGT AAACATTGCTCAAAGATCTAACAAAACTTCAAAAGAAACAAAATATTTTT GGTACAATAGATAAAATATAAAACTTTTTTGGAAATGAAAAATTATTAGA ATTTATATTGATCTATGTAATAGATATTGAAAAAATCTTCAATCTCTTTG GTAAAAACTGATAAAGGCTTCACTGAATCTTAAATTGTCCCCTTATTTTA AAAATTTCCATTAAAAAAAGCATTGTAACCATAAAATGTTTAACTACGCC TCATTACTCTGGTCAATGACCAATTGAGTTCCATACCTATAAAGATATAA CAGTATAATGGTAAAATATTCAATCTTACTAATTATTTCAAAGATTTCAT TTTCCCTGTATAATGCTACAATTTTCACTTTTCAATTCCCAAATAGTCAA ACAATGTCCTTTTTTTTTACAATAACTGCTAAGTTGAAAGCAATAAAGTT AGACAATTATTATATCACGTCGAGATACAACATGTCACAAAAAGCCCCTG GGGCTTGAAATAGGAAAATGATAGTTTATTGCTGAAACGTACTATAAACA TCTAAGAACAACCCTGGGGGGGGGGATACTAGGGCAAAATGGGTTACGGG GATGCGCCGCTGGTTAGGGTACCTTTTTTAACCTCCAAGAGTCCCAGGTA GGGTTGCTAAAACACCAAAATAGAAAAATCAGTCCCTCTTTTGGGAAAAC TTGGGGAAAAAGTAGAAAATTTTAAAACTTTGGAGAAATTTTGGAACTCC AGTCCCATTCAGAGTCACTTTTTTCGCAAATTTCGGCAAAATTTTTTAAA AAACGAGTCCCACGTAGGGTCCATTTTTCGAACCTCAGCGGAGCGCCCTG TCAGTCGACAAGGGTAGTACCCCGTCCCCTGGGGAACAACCGAAACTTAC GATTACTGATTTTTGTAAGAAAATCTGGTAATTTATTCATTGGGTTTGAT AATATAAAAATTATAAATTTTGTAAAATATCTGTCTTAATATAGCGGGTA TAAAATAGTTTGGTAGAGCGAAAATAAAAAAATGCAGTGTTTCCAGAATG CGGGTGGAGGAACAAAACTCTCATGCGGCCGAACGGGAAAAATTTTGTTT TGCTTTTTTTGATAACTATAAAGATCATTGAAATAGAACTTTAAAGATAA CTTTTATTTATAAACAGTATGAAGTCTTGAACACCAATGCATCGACTACT AACGAACAAAACTTGATTTACAAGCGAAAATATCTAACCAAACAGCGTTT GATAGTTTGAACGGTCAGATTGATTTTCTTTACGATGAACCATATAGATG AACCCATAGTCTGCGGCCGGGTCAGAATTTTTTTTTTTTCACCCGGCCGG TTTCGTGAAACACTACATTTTTATATTTTTGCCTAGATATAAATTTTTTA ACGGGAAGGATACAAAACTATCAATATTAATAATGTTCGCTTCATATTAG GTGATTTTGATGAATTTCCTTATTGTTTTTCCTCCATTTTTCAAATGTTT TTCAAATATTAGTGGAAAATGTATTTGTATTCAGTAAGCAACTAGTTTTC AATCCCCAAATAATTAAATAAGGAAGATGGAAGATTTGCTTTAAATAATT CATTATAAGTAAACGATGTTAAAACAGCAAATCTTGCCAAATATTTCAAA GATTTCATTTCTTCTTTCCTTTCAATATTATTGCAAGCCATTTTAAAACA TAACGGTCCAAGTCTCGTAGCATTTTGAAGATTATCTTTACGAAAAGTCA TCCCAATTTCTTCATTGTTCCAATTTACAGAATAGCAAGGATGTGAATTT TCAGGAGAAATAATTTGGTGAACAACTTCTATAGTAGATAAATCAATTGC CATGTAAAATTCAGGGTGAAATACATCCTTTGTGGCACAGTAAAGTGGCA TAACAAGGCGATCGAACTTCTTGATAGGGGCACGCACTCTGAAGTCCCTT CCTCTATATTCTACTGGTACCTTCACAGAGAGAATGAAGTTTTTTGTTTC ATTTATTGACAAACGAACCCCATTCTCCAGTTTTAAAGCTCTTAATTCAA GGTCCTCTAATTCGCCATAGCCATTATAAAGAAATATGTAATTTGAATGT TTAAGATCAACAACATTAAACAACATCCACGATTCAATGTATTCCAAATC ATACGAATATAAGAAATTACCGGAATAATCACATTCAATGATCTTTAGGT TTATCATATCTTCACTATCTTCAATATAAGACCTTTTAAAGAAAAATATT TTGTCCTTAGTATATTCCCTTCTCGCAAATACTGATCCACCAGCGGTTTC GAAATCTATAACCAATCTTCTCTCGTGACAAAGTTGATCTTTTTGTATCT TGATAAAATCCAGATAGTTGTATTTCTCGTCCTGGTTACTCTCATAATAC TTAGTAAAATAACTGCTTATAAGTAAAGTGGGATTCTCGTGGCCAAGAAA TTCTGCATATTTACAAGTTATCGAGTTGAATAATTGATCATATGTCAAAG ACAGATCTGGAGTGGATGCTTCGTCATCAATTTTTGAATCATGATGCTGC AAATCTCTATTTAAATCAGCTTTAAGTGACTCTGGTGAACCATGTTCCCT GTTTAGATTTTGACTTTGTGATTCTGAGGGCAATTCAAAAAACGATGTAG GTCTACTAGATTCATCGTTCGAATCTTGATTGTACGAATCTTCAAAGATA CTAGCCATAAAAGATAGATCTGGTGAATTTTGGGGTTCTGAAAAATCCTC AGGATTATAAAATGTTGGTGTTCTTGGTGGTGATTCTGGTTCAGTTGATT CAGGAATTTTTAAATCTTTGCCATTAAGCTCGTCAAAAAGATCAACAATG TTGTAATTATAAAGATCCATTACAGTTTCATGACGTTCGTTTGTTGGGTA TGTTTGTATGATATGAACCAATACACCACTGGTTGAATTGAAAACATTTT CTCGGTGACCATCTAGTTCAGTTTTTGGTAAGCTGATAATTATTCGACTG TGTACCCATTGGAATTCTTCTATATCGAATTTGATCACGTGAACGATATT TTCTTCCTTTTCTTCTTGTAGGATCAAATAATATTTACCAGTGTGGAAGA ACCCTTGCGCATGCTCGTTGGAGTAGCTTGAAGTGCTTGATACAGAAAAA TTACCCAATAACAAAGGTGGAATATCTCTATTTTCGTATTCACGTGGAAT GAACCATGATTTCTTAATGCTGTTATACATTGTTATCTGTTTCTTTTTAC CTTAAAAATAGAGGAAAGTGATATTGAATTCAATGTTCAGTGTCACAGTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045303XLOC_045303Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073086-exon-scaffold_86-1575043694:1401834..1402681TCONS_00073086-exon-scaffold_86-1575043694:1401834..1402681Clytia hemisphaericaexon
TCONS_00073086-exon-scaffold_86-1575043694:1396082..1397183TCONS_00073086-exon-scaffold_86-1575043694:1396082..1397183Clytia hemisphaericaexon
TCONS_00073086-exon-scaffold_86-1510915933:1401834..1402681TCONS_00073086-exon-scaffold_86-1510915933:1401834..1402681Clytia hemisphaericaexon
TCONS_00073086-exon-scaffold_86-1510915933:1396082..1397183TCONS_00073086-exon-scaffold_86-1510915933:1396082..1397183Clytia hemisphaericaexon
TCONS_00073086-exon-scaffold_86-1491911889:1401834..1402681TCONS_00073086-exon-scaffold_86-1491911889:1401834..1402681Clytia hemisphaericaexon
TCONS_00073086-exon-scaffold_86-1491911889:1396082..1397183TCONS_00073086-exon-scaffold_86-1491911889:1396082..1397183Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_86supercontigscaffold_86:1396082..1402681 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.28162 0.00408299 1.17377 0.52755 0 0 0 0 0 0.699606 0 0.000587543 0 0 0 1.00381 1.09287 0.710476 0 0.273573 0 5.98378e-05 2.90107 1.93549 0 0 0 3.01335e-10 0.869576 1.24362
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073086 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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