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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073073 ID=TCONS_00073073|Name=TCONS_00073073|organism=Clytia hemisphaerica|type=transcript|length=1196bp
aaatgaaaaaaaaatgtacacCAGCAAAAAATCGTTCTTCATCCCATCAG
AATTCAAACTAAAGGATATCCCGCCAATCAAAATTAGTGATGAAAACAAA
ACCAATGTAAGAGAACATATTCAAGGATTTTATCACACTGGTGAATATTT
CTTAATACAGCATGAAAATCGGGATATGATGGGCGAAACTCGAGTCCATG
TCATTCGCTTCAATCAAGATAGAATTGCATTTGAACACATTGTTGTGAAG
ATAGATTTAACATGCGATGACCAGCATTATTATGGCGCCAATAAGCTTGA
CCTATCAACTGGCACATTGATCCATACAATagagagaaaacaaagaaagc
gaaAAAttaatcgaccgccggaggcggtttctttcatagtggtacgctaa
tctcgttttgccttggctcattacttcgtctaccatttactttcggtttt
tttaactagattacccaggtgtttctcttttttttcgctgaatgactttt
attcggaattgaataatcgagacatgaaaaatgactatatatTTAgataa
tctgttttcaatgaataatctaaaatgtactggagatgacatgtaggcgt
taataatgtgcgcgcgctctttcgcaaacgtgatgcgtgatggaaggcgg
tcgtttcagtgtggttagatccacactgtgacctagttctAATTCAGGTT
TTATCTTGGATATTTATAGATATAATATTATTGAATTTATCAAGGAAAAT
CGTGGTCACAGTTTAACAATGGAAGAAAAATCAACACCGGATTTATCTTT
GGTTTATGATGAATCTGAATTCAATTGTTTTGAATATGATCTTGTTCATT
CATCTGGTGAACATTCCTTatgaaagtggagaccggccctTACAGTCATT
TTGTGATGCAGTCGAGTTTTAGTTTGTATTCCGTTTTTATCCACAGAATT
GGTTATGCAATTGCAGAGGGGTTACCAGAAAACGGTGCAAAAGTTGTCAT
TAGTAGTCGTAAAGAGACAAATGTAGAAGAAGCACAATTAAGACCAAAAG
GTTTAGAAGTTTCAGGATGTGTTTGCCATGTTGGTAAAACAGAAGATAGA
GCGAAACTTTTGGAATTGACATTAAAACAATATGGAAAGTTGGATATATT
GGTGAACAATGCAGGAATCAGTCCAGCTTTTGGTCCGCTGCTCAAA Run BLAST on NCBI transcript from alignment at scaffold_86:1276838..1278745- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00073073 ID=TCONS_00073073|Name=TCONS_00073073|organism=Clytia hemisphaerica|type=transcript|length=1908bp|location=Sequence derived from alignment at scaffold_86:1276838..1278745- (Clytia hemisphaerica)
AAATGAAAAAAAAATGTACACCAGCAAAAAATCGTTCTTCATCCCATCAG
AATTCAAACTAAAGGATATCCCGCCAATCAAAATTAGTGATGAAAACAAA
ACCAATGTAAGAGAACATATTCAAGGATTTTATCACACTGGTGAATATTT
CTTAATACAGCATGAAAATCGGGATATGATGGGCGAAACTCGAGTCCATG
TCATTCGCTTCAATCAAGATAGAATTGCATTTGAACACATTGTTGTGAAG
ATAGATTTAACATGCGATGACCAGCATTATTATGGCGCCAATAAGCTTGA
CCTATCAACTGGCACATTGATCCATACAATAGAGAGAAAACAAAGAAAGC
GAAAAATTAATCGACCGCCGGAGGCGGTTTCTTTCATAGTGGTACGCTAA
TCTCGTTTTGCCTTGGCTCATTACTTCGTCTACCATTTACTTTCGGTTTT
TTTAACTAGATTACCCAGGTGTTTCTCTTTTTTTTCGCTGAATGACTTTT
ATTCGGAATTGAATAATCGAGACATGAAAAATGACTATATATTTAGATAA
TCTGTTTTCAATGAATAATCTAAAATGTACTGGAGATGACATGTAGGCGT
TAATAATGTGCGCGCGCTCTTTCGCAAACGTGATGCGTGATGGAAGGCGG
TCGTTTCAGTGTGGTTAGATCCACACTGTGACCTAGTTCTAATTCAGGTT
TTATCTTGGATATTTATAGATATAATATTATTGAATTTATCAAGGAAAAT
CGTGGTCACAGTTTAACAATGGAAGAAAAATCAACACCGGATTTATCTTT
GGTTTATGATGAATCTGAATTCAATTGTTTTGAATATGATCTTGTTCATT
CATCTGGTGAACATTCCTTATGAAAGTGGAGACCGGCCCTTACAGTCATT
TTGTGATGCAGTCGAGTTTTAGTTTGTATTCCGTTTTTATCCACAGAATT
GGTTATGCAATTGCAGAGGGGTTACCAGAAAACGGTGCAAAAGTTGTCAT
TAGTAGTCGTAAAGAGACAAATGTAGAAGAAGCACAATTAAGACCAAAAG
GTTTAGAAGTTTCAGGATGTGTTTGCCATGTTGGTAAAACAGAAGATAGA
GCGAAACTTTTGGAATTGGTGAGTTCCTCAAAATATTTTCGTTTCATTAC
ATTTTCAGATTTTCATTTAACATTGAAAATGCTTCAATATACGATATTCC
ATTCGTGAATGTGATGGAACGATTAAATTTCACAAATAAAGTAATAGTGA
AATTCTTATGATTTAATTTTTTCAGTCAGTGTTTTGAAATAATTCTCGTG
GATTCAATATCGCGTTTAAACCTTAAAAATCAGCTAAAAATGGCCTAAGC
TTTGCATGGATTCGATTTTGCGAGTAATAACAGAATAACAGTGTCAACCA
AAAAGGCTAAATTCCTGGTACTTCCTGGAAAACCTGGAAAAGAAGGTGTT
TTGTAGAATCAAATTGTTAATAACTCAGGGAAACTCAACTCTTGATTTCT
GTGTGAACTCTGGAAATTTTATCTTTTGTCGGGGGAAACTATTTGTTTTG
TTTGATATGGATTCTTGGGGTACTTTGGTTCAAGTCTTACCACCTCAAAT
TGCACGTTTTCATCGAGTGTATCTTCGTCTCCTTTCGTCGACTTTTCAAT
GAAGATATCATCGCCAGCTTGTTTTTCTCTTCAAAAAGTTTAGTTTCGTT
AGGGAAAATTTTCGTCGGGGAAATTATTCGTCACTTGGCCAAAATTTCGT
CACTTTTCCCTGACGAATTATTTAGAAATTTGAGAGGGTTTATTGATTTC
TTATGATTGTTACCCTTTTTTTCTTAACAGACATTAAAACAATATGGAAA
GTTGGATATATTGGTGAACAATGCAGGAATCAGTCCAGCTTTTGGTCCGC
TGCTCAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00073073-exon-scaffold_86-1575043694:1277628..1278745 | TCONS_00073073-exon-scaffold_86-1575043694:1277628..1278745 | Clytia hemisphaerica | exon |
| TCONS_00073073-exon-scaffold_86-1575043694:1276838..1276915 | TCONS_00073073-exon-scaffold_86-1575043694:1276838..1276915 | Clytia hemisphaerica | exon |
| TCONS_00073073-exon-scaffold_86-1510915933:1277628..1278745 | TCONS_00073073-exon-scaffold_86-1510915933:1277628..1278745 | Clytia hemisphaerica | exon |
| TCONS_00073073-exon-scaffold_86-1510915933:1276838..1276915 | TCONS_00073073-exon-scaffold_86-1510915933:1276838..1276915 | Clytia hemisphaerica | exon |
| TCONS_00073073-exon-scaffold_86-1491911889:1277628..1278745 | TCONS_00073073-exon-scaffold_86-1491911889:1277628..1278745 | Clytia hemisphaerica | exon |
| TCONS_00073073-exon-scaffold_86-1491911889:1276838..1276915 | TCONS_00073073-exon-scaffold_86-1491911889:1276838..1276915 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_86 | supercontig | scaffold_86:1276838..1278745 - |
Blast
BLAST of TCONS_00073073 vs. Swiss-Prot (Human)
Match: DHRS4 (Dehydrogenase/reductase SDR family member 4 OS=Homo sapiens GN=DHRS4 PE=1 SV=3) HSP 1 Score: 93.9745 bits (232), Expect = 1.066e-21 Identity = 48/119 (40.34%), Postives = 75/119 (63.03%), Query Frame = 3
Query: 843 CSFIW*TFLMKVETGPYSHFVMQSSFSLYSVFIHRIGYAIAEGLPENGAKVVISSRKETNVEEA--QLRPKGLEVSGCVCHVGKTEDRAKLLELTLKQYGKLDILVNNAGISPAFGPLL 1193
C+ W + M +G + + +L + IG+AIA L ++GA VV+SSRK+ NV++A L+ +GL V+G VCHVGK EDR +L+ +K +G +DILV+NA ++P FG ++
Sbjct: 10 CARAWNSVRM-ASSGMTRRDPLANKVALVTASTDGIGFAIARRLAQDGAHVVVSSRKQQNVDQAVATLQGEGLSVTGTVCHVGKAEDRERLVATAVKLHGGIDILVSNAAVNPFFGSIM 127
The following BLAST results are available for this feature:
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