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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073071 ID=TCONS_00073071|Name=TCONS_00073071|organism=Clytia hemisphaerica|type=transcript|length=2629bpRun BLAST on NCBI protein sequence of TCONS_00073071-protein >TCONS_00073071-protein ID=TCONS_00073071-protein|Name=TCONS_00073071-protein|organism=Clytia hemisphaerica|type=polypeptide|length=270bp MNCNILRKVTLSTRMMSTVSKRLEGKVAIVTASTAGIGYAIAEGLAENGARun BLAST on NCBI transcript from alignment at scaffold_86:1236710..1296983- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00073071 ID=TCONS_00073071|Name=TCONS_00073071|organism=Clytia hemisphaerica|type=transcript|length=60274bp|location=Sequence derived from alignment at scaffold_86:1236710..1296983- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_86:1236710..1296983- >TCONS_00073071 ID=TCONS_00073071|Name=TCONS_00073071|organism=Clytia hemisphaerica|type=CDS|length=7317bp|location=Sequence derived from alignment at scaffold_86:1236710..1296983- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00073071 vs. Swiss-Prot (Human)
Match: DHRS4 (Dehydrogenase/reductase SDR family member 4 OS=Homo sapiens GN=DHRS4 PE=1 SV=3) HSP 1 Score: 236.113 bits (601), Expect = 2.501e-70 Identity = 125/263 (47.53%), Postives = 175/263 (66.54%), Query Frame = 2
Query: 1232 STRMMST-VSKR--LEGKVAIVTASTAGIGYAIAEGLAENGAKVVISSRKEKNVEEALQQLKSKDLEVSGCVCHVAKEGDRTKLLEEALKQYGQLDILVNNAGISPAFGPLLKTTSEQWDKIFTTNVKAGFQMTQEAMPHLNKT-KGSVLFNSSITGYVPFPMIGAYSISKTALLGLIKALATECGPTGVRVNGIAPGIIETNLSEMLTTTDSISQTILSNTPLGRFGKPSEVAGLAVFLSSDEASYITGETIMVTGGVHSRL 2008
S RM S+ +++R L KVA+VTAST GIG+AIA LA++GA VV+SSRK++NV++A+ L+ + L V+G VCHV K DR +L+ A+K +G +DILV+NA ++P FG ++ T E WDK NVKA MT+ +P + K GSV+ SSI + P P Y++SKTALLGL K LA E P +RVN +APG+I+T+ S ML +++ + R G+P + AG+ FL S++ASYITGET++V GG SRL
Sbjct: 16 SVRMASSGMTRRDPLANKVALVTASTDGIGFAIARRLAQDGAHVVVSSRKQQNVDQAVATLQGEGLSVTGTVCHVGKAEDRERLVATAVKLHGGIDILVSNAAVNPFFGSIMDVTEEVWDKTLDINVKAPALMTKAVVPEMEKRGGGSVVIVSSIAAFSPSPGFSPYNVSKTALLGLTKTLAIELAPRNIRVNCLAPGLIKTSFSRMLWMDKEKEESMKETLRIRRLGEPEDCAGIVSFLCSEDASYITGETVVVGGGTPSRL 278 The following BLAST results are available for this feature:
BLAST of TCONS_00073071 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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