TCONS_00073057 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00073057
Unique Name	TCONS_00073057
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	3846

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_86:1146959..1155854-

transcript sequence

>TCONS_00073057 ID=TCONS_00073057|Name=TCONS_00073057|organism=Clytia hemisphaerica|type=transcript|length=3846bp
tttggcggatttgactgaaatccgccaaattaagttcccgccaaaatttc
ttttttccgccatccgccaaattaaattcccgccaaatttagttttttcg
tccatcggccaaattaaattccctctgaaaaaacttttttggccatccgc
caaattaaattcccgccaaattaaacattttgaaaatatgatctctttta
aggtgtttttgctttttttgctgttttgacgccattttaaggttaaattt
ttaagcgaccgccaaattaaattcccgccaaatttagttttttcgtccat
cggccaaattaaattccctctgaaaaaacttttttggccatccgccaaat
taaattcccgccaaaatttcttcctttaaggtatataataaaaaaactta
CTTCTCAGTTTCCAAGCAATACAACTAAATTAGGAGGGATGTATATTTTC
GCACGCTCTGTAAGAAAGTTGGTTGCCAACCCTGCTAAGTTGACACAAGC
TGCTCTCAACACGTTGGCAAAGAGGAATGCTAGGAGTTATGCAAGATCAA
GGATAATTGAgcaacaaaaagtcaaaacaggAGCCGGAGGTTTTAGAGCT
GAGAAAATTGGTCAAGCAGTTTTAGGTGGATCTGCAGCTGCTGGTATTGG
TGCATTGTGTTTTTATGGTCTTGGTCTATCCAATGATGTTGGTGCTATTG
ATAAAGCAAGATTTTGGCCACCTGAGATGCGTTCAATGATCAAATCGACC
TATTTGTATTTTCTTGGAAGTTTGAGTATAACTGCTGGGTCAGCATATTA
TTTGCATCGATCAGCACTTGTCACTCGTATGATGTCTGGAAATCCTTGGG
TTGTTTTTGCAGGTAGCATGGCAGCCTTGATCGGAAGTTCTATGGCTTGT
CGATCCATTGAATATGAAGCAGGATTGAATGCAAAACATTTAGCTTGGGG
AGtccACAGTGGCGTTGTTGGGCTTGTCGTTGCACCCTTGATGTTCTTGG
GCGGACCACTCATCTTGCGAGCCGCCACATACACCGCCGGAACCGTAGCG
GCGCTTTCACTGACGGCTGCATGTGCACCCGATGAGAAATTCTTATCATG
GGGCGGACCATTGTCATTGGGACTGGGTGGAATTTGCGTTGCTTCATTGG
GTGGTATGTTTTTGCCAGCCACTTCGGCAGCAGTACCGGTCATCCAATCT
TTGGTGACGTACGGTGGTCTTGTTGTCTTTGGAGGATTCATGTTGTACGA
TACACAGAAGATCATCAAGAAGGCTGAACTTGCCACGTACAGTGGAAAGA
AATATGATCCTATCAATGCATCGATCGGTATTTATATGGATactatcaac
attttcattcgAATTGCTATGATTATGGCTGGAAATAACCGTCGAAAGTA
AAAAAGAAGAAGTTTGTTGGTAGATTTTTGAAGaacttgaaaaatgaaag
tggtGTTAGTTAACGTTATGAAAGAAGGAGGTTGTATGATGtcaatttgt
ttatatttttggtTAAACAGAACATTATGATCCATAATAGCAGCAGGCAA
TAGTTGACAATACagtcgaaaaggtgtattattaaTCATgtgtttcaagc
cgaaggctagaggcgaatcttcaaccttttttttaaacaagaaaaagtga
aagcCTTAAGGTCTGCGCTGCGTTTCGGAATACAGATTGAATCTACAATC
Agttccaaaatacttggcacaaaagggaaattccccacgaaattttataa
ccacaaacgatttgtaagtgctccaaattaggttggaaaggtagagtttt
aactcttgaGTTTTAACGccagaccttaggatctgaggatccaaaagttc
aaaaatggtccggtagggcttgaaatatagcctagaaaccaataaatccc
tcccagatcgaaatattcgatgaaatcaagttgaaggcccgaaattgaca
atctcgctcgaacttcaatttttgtaaaatggtaaaatagccaaaattgc
caatatgttatggcactgattgtagcatTTCCTTTGCGTTggcgtttttt
atttttcaaattgttgcGGTGAATGTAATACTTTTGATTCagcgtttgta
tgaaaaccatGCGGGCCGTGCAACTTAtgtaggaaataagtggcttcaaa
tcctacaaaGGAGATTCAACTCTGTAGTCTTCCGCTAAACCGTATTGCTA
TTAGCTTCTTAAGTAACCTGAAGTTGTAAAAAAACCTGGATCAACTTGAA
CCCATTCTCCTTATAATGTATATAAGACATACATTGTATGTAGacattca
tcaaaattaaaaattcaaattccaaCATTTCCGAAGGCTTTACTTAGGAA
GTCCTTTAAAATGGAGTAATATTTGCATACAAATGCGAACTTATAAACGT
CATAACAGAGaatatttataaatttgaaattttataatattgcaaaatta
atttttttttaaagaagaacaATGGAAATAATTCAAgtgaaacaaacttt
tttcaatccTCGATATTTAGATGATACTAAAATTCGAAAGCTTTTCGAAT
GTGATTGTGTATTTATGTACAAGTTAAATGTTTTGCAAATACTACTTaac
tgcctaaaaataaaaatgattttgcAATAAAAGTTCTTGCCATATTTTCT
CACTCAGGATCATGACAACTGTGTAATCTTTCTGAGTTATGCTTACATTT
TGCCTTTATGACACCATAACGATTTTGTTACTCTATTACAAGTGTTTGTA
TTACAGCAAAGTGGCATTCTGTTTCCCTGCGTTGGTTGCGGATTATATTT
ATTTAGGTCTTGATTGTTCGGTTCAATAGATGCAGGGTTTTCGTTTTTCG
GTTCAGTAGATGTTGGTTTTTCGTCTTTCGTTTCAGTAGATGCAGGTATT
TCGTTTGTCGGTTCAGTAGATGCAGGTTTTTCGTTCGAAGGCTCAGTAGA
TGCGGGTTTTTCGTCTTTCGGCTCAGTGGATTCAGATTTTTCGTCTTTCG
GTTCCGTGGATGCAGGATTCTCGTCTTTCGGTTCAGTGGATGCGGGTTTT
TCGTCTTTCGGCTCAGTGGATTCAGATTTTTCGTCTTTCGGTTCCGTGGA
TGCAGGATTCTCGTCTTTCGGTTCAGTGGATGCGGGTTTTTCGTCTTTCG
GCCCAGCGGAAGCGGGTTTTTCGTTCGAGGGCTCAGTAGATGCAGGTTTT
TCGTCTTTCGGTTCAGTGGGTGCGGGTTTTTCGTCTTTCGGTTCAGTGGA
TGTGGGTTTTTCGTCTTTCGGTTCAGTGGATGCGGGTTTTTCGTCTTTCG
GTTCAGTGGATGCGGGTTTTTCGTCTTTCGGTTCAGTGGATGTGGGTTTT
TCGTCTTTTGGTTCAGTGGAAGCGGGCTTTTCATTCGAGGGCTCAGTAGG
TGCAGGTTTTTCGTTTTTCGGTTCAGTGGATGTGGGTTTTTCGTCTTTCG
GTTCAATAGACACGGGCTTTTCGTTTGAGGGCTCGTTATTCGATGGAGGT
TTTGTAGGGTCGTCCTCCGGCTTCTTTTCGGggtctttttcttcaaaagg
gGACTAAAAGagtaagtaaacaaaaaaaaattgaaatatgcaCGCATTTG
ATTGTAGATttcatactgtttttttttcatgttaAATTCACAAAATAATA
AAGAACTATAACAAATACAAATTACAAACTAAGTTAGTACTCTGAAAATT
CTTCAGTAATGGTTGTTACAAAACCCGATTTatgctttcaaataaaatta
ttctttGACCTCTTcacatttgaatttttctttcaaacttGGGTTGGGAA
TGCATTTCTCGTTTGGTTTGCATGGATTTTTGGAACAAGGTCCAGG

Run BLAST on NCBI

transcript from alignment at scaffold_86:1146959..1155854-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00073057 ID=TCONS_00073057|Name=TCONS_00073057|organism=Clytia hemisphaerica|type=transcript|length=8896bp|location=Sequence derived from alignment at scaffold_86:1146959..1155854- (Clytia hemisphaerica)
TTTGGCGGATTTGACTGAAATCCGCCAAATTAAGTTCCCGCCAAAATTTC
TTTTTTCCGCCATCCGCCAAATTAAATTCCCGCCAAATTTAGTTTTTTCG
TCCATCGGCCAAATTAAATTCCCTCTGAAAAAACTTTTTTGGCCATCCGC
CAAATTAAATTCCCGCCAAATTAAACATTTTGAAAATATGATCTCTTTTA
AGGTGTTTTTGCTTTTTTTGCTGTTTTGACGCCATTTTAAGGTTAAATTT
TTAAGCGACCGCCAAATTAAATTCCCGCCAAATTTAGTTTTTTCGTCCAT
CGGCCAAATTAAATTCCCTCTGAAAAAACTTTTTTGGCCATCCGCCAAAT
TAAATTCCCGCCAAAATTTCTTCCTTTAAGGTATATAATAAAAAAACTTA
CTTCTCAGTTTCCAAGCAATACAACTAAATTAGGAGGGATGTATATTTTC
GCACGCTCTGTAAGAAAGTTGGTTGCCAACCCTGCTAAGTTGACACAAGC
TGCTCTCAACACGTTGGCAAAGAGGAATGCTAGGAGTTATGCAAGATCAA
GGATAATTGAGCAACAAAAAGTCAAAACAGGAGCCGGAGGTTTTAGAGGT
GTGTAAAAAAATTACTGTTTTAATTTTTTTGGTTCTGTACTGTACCAGGG
CCTGAAATAATGATCCTGCATTGGACATTGTCTGACCCAAATAGCTTCTT
GTCCTACCCAAAAATCATAATTTTCAAGCTAAAGCAACTCTAATTACCCA
CTTAAAATCGTTATTTCAAACCTTGTGTATTTTGTAATGTTTATCCTGTT
ACACTACAGTACCTCTTAAAGAAAGTTAATGATTAAAACTTTTAGCATTT
TAAGAATGAAATTTGAAAAAACCTGACCTCCTTCTCGTTTCAGCTGAGAA
AATTGGTCAAGCAGTTTTAGGTGGATCTGCAGCTGCTGGTATTGGTGCAT
TGTGTTTTTATGGTCTTGGTCTATCCAATGATGTTGGTGCTATTGATAAA
GCAAGGTTAGCTGCAGCACTAATAACTTTTTCTTTAAAACAAACCTTAAA
AGAAAAGCCTGGGAAGTTTATCGGACAAGCAGTGGTATTCTTCGGTCTTA
ACAAATCTGATGAAACCGTTTCCGACACTTTTATTTCTAATGATTCGTAT
CTTCTTAGAATGTTGAATCTATGAATTCCTAAGACTCCGTTACTACTCCA
TCATGTATTTATTGTATTATGTACATACTGTAATATTAAAAACATTTAAT
TTTGAATTTTGTTTAGTCAAAGTAATCCATTTTTCTCAACGTTATTTTTC
CTTGATAGTAAGTGTCTTAACTGAAACCAACTATGGTTTAAATAAAAGTA
TATTATAAAAAGTGCTTGATAATTGCCTGATAATCGTAACCTTTTTTAAT
TCTATGATAGATTTTGGCCACCTGAGATGCGTTCAATGATCAAATCGACC
TATTTGTATTTTCTTGGAAGTTTGAGTATAACTGCTGGGTCAGCATATTA
TTTGCATCGATCAGCACTTGTCACTCGTATGATGTCTGGAAATCCTTGGG
TTGTAAGTTCAATTTCTCCGTTCTGCTGTTTGTTTTTTCTAATTTCTCAA
GATCGAAGAAATTTTGTCGACTACTCTAAGGTTCCAAACAAACGGCCCCC
CGCTTATTAATTTTTCGAAAATTTTTCGAGAAGGTCCCTTATTCTGCCCT
AAATATCCCGATTTTAGCCTATATTTACCTTATTTTCGGGTTTTTCGTAA
TTACAATTTCCAACCTCCGGCAATTAGGTCCATCTCATTTATTAAAATTT
TGAAAATTTTCCAACCCCTCTCCGTTTATTCGAACCCCCCGTTTATTTGG
AACCTAAGAGTATTGATCGAATCAAACAAATCATTTTCACAGAAGCAAAT
AATCTAAATAATCTCATCGTTAAGATGTGTTGTTATAGAATGTCTTGATT
CCAAAAATCTTATTGGGGGGATCTATTTTGAAGGTGGAAGCATAGTTGAT
TGGGAGTTTTAATAATGTGGTTGGAATTATAATTTTTGGTGGAACCTTTA
CCCCTCTTGCATACTTTGTACTTATTGGCACATTATCCCCGTCTTTATTT
CAGGTTTTTGCAGGTAGCATGGCAGCCTTGATCGGAAGTTCTATGGCTTG
TCGATCCATTGAATATGAAGCAGGATTGAATGCAAAACATTTAGCTTGGG
GAGGTTTGTTGAATTTGATTCCTTATTTCTTTTTCAAAAGATCTCTCAAG
AAGAAATATTTTTTAAAGAACATTCTTGAATCTAAACCTGTTGAAATTAG
AAATTAAAAAATGTTTATCTTTGAGTTTCCAAAGATTTTCAATTACAATC
GAACGATTCTTATCTAGGTAGGTAGATTTCACCTTGAATTTTTTTTTTAA
AAGGAAACTTAATCGTCTGAAACATTTTTCTTGGGGTATATATAATTAAA
GTTTGCGAAAAATCACTTTTTTAAGAAACTTTGTCACAACATCCTTGGAG
TTGACCAGAACGGGGGAACTTCATTACTTACATTACTTCATTGCCTAATA
TAAGAAATTTCGTGACTATTCCCGAAAAGTAGTAAGTCATCCATTTGCTA
AATCGGCCCTACAGTACTTTCTGTAATTCTATTCTAAAATATTAATCCCA
ATCTTTCATTAACTCTAAGAATATTCGCGGTTCTTTGAAGATCGAATTAG
AAAGAGTTAACTTGAAATTGATATTTCTTTTTTTTTTTACAATTTTTAGT
CCACAGTGGCGTTGTTGGGCTTGTCGTTGCACCCTTGATGTTCTTGGGCG
GACCACTCATCTTGCGAGCCGCCACATACACCGCCGGAACCGTAGCGGCG
CTTTCACTGACGGCTGCATGTGCACCCGATGAGAAATTCTTATCATGGGG
CGGACCATTGTCATTGGGACTGGGTGGAATTTGCGTTGCTTCATTGGGTA
AGTCAAGTTTATAGAGTTTCTTATTCGAAAAAATAAATATTTTAGAGACC
TCGAAATGGAGGATTACAATCTATTGCTCTCCAAATGCTAAAGTTGGTAT
CAATAAAAATTCAAAATTCAAAAAAGATTTCCTTGATTTCTTAGTCAAGG
GATAGGTTCAGAAATTGCTTAAAACATTCTACCGCCAGGTCTCATACAAA
GAGTTCAGCATGGGTAAACCTAAAATAAAAGAAACAAAAAACTTGATACC
TTAATGGTAATAAATTTCGCGTGTTACAATCGCGAAATTTTTTTCAGGAA
ACGTGTTTCACATGTATTGAATTTCGCGATTCACTAAATTGGGCATTTTC
AAAAAGTGGGAATAAAGAAAGAAAATGGCTGATTTCGCTTGAAACACAAC
GTATTGGGTGTAAACATATTAAAAAAGTAACTAAGTGTAACAAAAAAATT
CGCGATTTTTGGTCTATTTTGAAATTTTTTCACGTGTATTTAATTTTGTG
ATTTTGAAAAATTTAAACGGTATTAAATTTCGCGAAATGTGACCTAAAAA
ATCGCGAAATTAAGTACCCGCGAAATTTGTAACACGCGAAATTTAATACC
ATTAAGGTAAACCTGTTAAAGGGAACCTTTACTTGACTAAGATACTTACA
TTCGAAACTTACAAACGACCCCATCTACTTTCTTAACCAATCAGATGAAA
AAGTCAAATTTAATTTTTGAAAACGGTTTCAAATGTCTTGTTTGTAGAGT
TTTGTATTGACAATTGACGCCATTATGAAATGCTCCAAAAGGGTTCAAAA
TTCTTTAAGGTGGTTCTAGGACCCATATAAGAAACCTGTGTACCGAATTT
CAGCCAAATTATTTTTGAAAGGTAAAATCTAACTTGGATCCAAAAAGTGA
GTAAATCACCCGGATGTGAAAAGTTAATTTCACACCTTGGAGCGTGAATG
ATTTTCCTGCCCCTTTGAATTTCTTTCACGCTCTAAGGTGTGAAATGCAC
TTTTCATACCCAGATGATTCATCCATATTTTGTCACCATTTTCCAGGTGG
TATGTTTTTGCCAGCCACTTCGGCAGCAGTACCGGTCATCCAATCTTTGG
TGACGTACGGTGGTCTTGTTGTCTTTGGAGGATTCATGTTGTACGATACA
CAGAAGATCATCAAGAAGGCTGAACTTGCCACGTACAGTGGAAAGAAATA
TGATCCTATCAATGCGTAAGTTTATCGTTGGTCGTAAAAAGCCTTCTTTA
TACATGACTGTCTTTATGACATTGTACTTTTCGATATCTAATTAAAGGTA
CTGTTGTGCGCAGATTTGTAATACTTTCTGCGCAGATTTGTAATACCTGC
GCAGATTTGTAATAAACTTTGCGCAAATTTGTAATACTTGAGCTGCGCAG
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGCTGCGCAGAAAT
GTAATACTTCTCTGCGCAGATTTGTAATTTGGAATTGATATTTTCATTGG
TAACCAAATTCTATTCTGCGAACAAAATGCATTAAAAATGACTTAGAAAA
TAATACCCAAATAAAGTTGTGATTATTGAGCACACCGAATAAATAATCAA
TCAATATTTCTTTTCTAAGCAGTGCTTTTATAAGAAATTTATCTGTTAAT
ATAAAAATTGTTTATGAGAATAGCGTGGACATAATTTTTATAAGAACTGC
TTTTATAAGAAACTAATCAATAACTCGTAAAATAAAAATTATTTGTTGTC
GGTAATTGTTTATTTCGAAGTAAACAAGGTACGAAGAATAACATGAACAT
ATTTATTTTTTATAAGCACTGCTTTTATAAGAAACTAATTTCCTTTAGAT
CAAAAGATATTGATTAGTTTCTTATAAAGTTGATACTTATAAGAAAAATG
AAAATACTTAAAATAAGCAAAATCCCATATTTGTATTGAAAGAACCAAGC
GCCGAAAGCCAATTTCCATTAGATTAAAAGATATTGATTCGTTTCTTATA
AAGTTGATTCTTATAAGGAAAATGAAAATATTAAAATTATTCCCAATCCC
ATGTTTGTATTGAAAGAACCAACTGCCAAAAGCCAATTTCCATTAGATTA
AAATATATTGATTCGTTTCTTATAAAGTTGATACTTATAAGAAAAATGAA
AATATTAAAATTATTCCCAATCCCATGTTTGTATTGAAAGAACCAACTGC
CAAAAGCTTATTTTCATTAGATTAAAATATATTGATTCAATTCTTATAAA
GTTAATGTTCATACAAAAGATCTACAACCTTTGTGTTTTTTTCTGATTAT
TTTCTAAGTCTTTTTTTCGAAACTTTTCTTCGTGGAAAACATATGCCCTC
GAAGTAAAAATCTAAATTCCAAATTGCAAATCTGCGCAGAGAAGTATTAC
ATTTCTGCGCAGCTCAAGTATTACAAATTTGCGCAAAGTTTATTACAAAT
CTGCGCAGGTATTACAAATCTGCGCAGAAAGTATTACAAATTTGCGCAGG
TATTACAAATCTGCGCAAGTATTACAAATCTGCGCACAACAGGTACACAG
AAGACCTCTTAAATAGCTGGAGTAGTCTTTGAAAAGCTAACCAATTATTA
ATGACATTCTCAAAAACCAGTCCTTTTTTCCATTCCTGGGACTGGATTAA
GGTCTCATTTGTTAAAAGTCTATGAAATGGGATCGTAACCATAATACTGT
AATTGGTGGAAAATAAGGACCTCGAAAAAATTTGATAAGGTGGGGAGCTG
GAGTTAATTTGGAGTACACTCTTTTTTTTATTAGCATATGGAAAAATCCG
TTCGAGGCTCAATATGCTTAGCAAAGTTTAATTTATGCTTTATTTTATGT
GCTTAGACTTCGATTTGTTAGTTTCTCTGGGTTCATGAAAATTTCGAACT
ATAAGTCTGCACATTGATCGGTTCAAAGAATGAAAGTTATCTTTGTAATT
TGGAGCAGCAGGCGAAAATCTTTGGTCTAAGAAAGTTTAAACAGCTTTAA
AAGTAACCCTAAAAAGGTCAGCGTTTTAGAAAAGCAGCACGAATTTTTTT
GCATATCAGCTTGGAGGTATGCTTAGCATTATGCTTTTTTTACCGAATTT
GACCCCTAGTGTGCTTATAAAACGTTATGCTTATTAAAAAAGAGTGTATC
CAAATTGGAATGTTTCCGAAAAATTGAATGACCGTTGCGTATGGTCATTT
TTCTCAACATTTCAGATCGATCGGTATTTATATGGATACTATCAACATTT
TCATTCGAATTGCTATGATTATGGCTGGAAATAACCGTCGAAAGTAAAAA
AGAAGAAGTTTGTTGGTAGATTTTTGAAGAACTTGAAAAATGAAAGTGGT
GTTAGTTAACGTTATGAAAGAAGGAGGTTGTATGATGTCAATTTGTTTAT
ATTTTTGGTTAAACAGAACATTATGATCCATAATAGCAGCAGGCAATAGT
TGACAATACATCGTTTCGACCGTAGTCGCGTGCCACTTAATTATTTGATT
ATCCCCCTTAATCGACCGAATCCTTTTTTGACACATTTTACTATTGTCTA
TAGGGGCAAAAAAAAGGCTGGTACGGGCAAAAAAAACCCTGCGCGGCAAT
TGGCGGCGGCTACAGTCGAAAAGGTGTATTATTAATCATGTGTTTCAAGC
CGAAGGCTAGAGGCGAATCTTCAACCTTTTTTTTAAACAAGAAAAAGTGA
AAGCCTTAAGGTCTGCGCTGCGTTTCGGAATACAGATTGAATCTACAATC
AGTTCCAAAATACTTGGCACAAAAGGGAAATTCCCCACGAAATTTTATAA
CCACAAACGATTTGTAAGTGCTCCAAATTAGGTTGGAAAGGTAGAGTTTT
AACTCTTGAGTTTTAACGCCAGACCTTAGGATCTGAGGATCCAAAAGTTC
AAAAATGGTCCGGTAGGGCTTGAAATATAGCCTAGAAACCAATAAATCCC
TCCCAGATCGAAATATTCGATGAAATCAAGTTGAAGGCCCGAAATTGACA
ATCTCGCTCGAACTTCAATTTTTGTAAAATGGTAAAATAGCCAAAATTGC
CAATATGTTATGGCACTGATTGTAGCATTTCCTTTGCGTTGGCGTTTTTT
ATTTTTCAAATTGTTGCGGTGAATGTAATACTTTTGATTCAGCGTTTGTA
TGAAAACCATGCGGGCCGTGCAACTTATGTAGGAAATAAGTGGCTTCAAA
TCCTACAAAGGAGATTCAACTCTGTAGTCTTCCGCTAAACCGTATTGCTA
TTAGCTTCTTAAGTAACCTGAAGTTGTAAAAAAACCTGGATCAACTTGAA
CCCATTCTCCTTATAATGTATATAAGACATACATTGTATGTAGACATTCA
TCAAAATTAAAAATTCAAATTCCAACATTTCCGAAGGCTTTACTTAGGAA
GTCCTTTAAAATGGAGTAATATTTGCATACAAATGCGAACTTATAAACGT
CATAACAGAGAATATTTATAAATTTGAAATTTTATAATATTGCAAAATTA
ATTTTTTTTTAAAGAAGAACAATGGAAATAATTCAAGTGAAACAAACTTT
TTTCAATCCTCGATATTTAGATGATACTAAAATTCGAAAGCTTTTCGAAT
GTGATTGTGTATTTATGTACAAGTTAAATGTTTTGCAAATACTACTTAAC
TGCCTAAAAATAAAAATGATTTTGCAATAAAAGTTCTTGCCATATTTTCT
CACTCAGGATCATGACAACTGTGTAATCTTTCTGAGTTATGCTTACATTT
TGCCTTTATGACACCATAACGATTTTGTTACTCTATTACAAGTGTTTGTA
TTACAGCAAAGTGGCATTCTGTTTCCCTGCGTTGGTTGCGGATTATATTT
ATTTAGGTCTTGATTGTTCGGTTCAATAGATGCAGGGTTTTCGTTTTTCG
GTTCAGTAGATGTTGGTTTTTCGTCTTTCGTTTCAGTAGATGCAGGTATT
TCGTTTGTCGGTTCAGTAGATGCAGGTTTTTCGTTCGAAGGCTCAGTAGA
TGCGGGTTTTTCGTCTTTCGGCTCAGTGGATTCAGATTTTTCGTCTTTCG
GTTCCGTGGATGCAGGATTCTCGTCTTTCGGTTCAGTGGATGCGGGTTTT
TCGTCTTTCGGCTCAGTGGATTCAGATTTTTCGTCTTTCGGTTCCGTGGA
TGCAGGATTCTCGTCTTTCGGTTCAGTGGATGCGGGTTTTTCGTCTTTCG
GCCCAGCGGAAGCGGGTTTTTCGTTCGAGGGCTCAGTAGATGCAGGTTTT
TCGTCTTTCGGTTCAGTGGGTGCGGGTTTTTCGTCTTTCGGTTCAGTGGA
TGTGGGTTTTTCGTCTTTCGGTTCAGTGGATGCGGGTTTTTCGTCTTTCG
GTTCAGTGGATGCGGGTTTTTCGTCTTTCGGTTCAGTGGATGTGGGTTTT
TCGTCTTTTGGTTCAGTGGAAGCGGGCTTTTCATTCGAGGGCTCAGTAGG
TGCAGGTTTTTCGTTTTTCGGTTCAGTGGATGTGGGTTTTTCGTCTTTCG
GTTCAATAGACACGGGCTTTTCGTTTGAGGGCTCGTTATTCGATGGAGGT
TTTGTAGGGTCGTCCTCCGGCTTCTTTTCGGGGTCTTTTTCTTCAAAAGG
GGACTAAAAGAGTAAGTAAACAAAAAAAAATTGAAATATGCACGCATTTG
ATTGTAGATTTCATACTGTTTTTTTTTCATGTTAAATTCACAAAATAATA
AAGAACTATAACAAATACAAATTACAAACTAAGTTAGTACTCTGAAAATT
CTTCAGTAATGGTTGTTACAAAACCCGATTTATGCTTTCAAATAAAATTA
TTCTTTGACCTCTTCACATTTGAATTTTTCTTTCAAACTTGGGTTGGGAA
TGCATTTCTCGTTTGGTTTGCATGGATTTTTGGAACAAGGTCCAGG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_045296	XLOC_045296	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_86	supercontig	scaffold_86:1146959..1155854 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.145555	5.95394e-06	0.244847	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.35007e-05	6.24164e-09	0	0

Blast

[Close]

BLAST of TCONS_00073057 vs. Swiss-Prot (Human)
Match: GHITM (Growth hormone-inducible transmembrane protein OS=Homo sapiens GN=GHITM PE=1 SV=2)

HSP 1 Score: 243.817 bits (621), Expect = 4.863e-71
Identity = 137/264 (51.89%), Postives = 187/264 (70.83%), Query Frame = 1

Query:  592 FRAEKIGQAVLXXXXXXXXXXLCFYGLGLSNDVGAIDKARFWPPEMRSMIKSTYLYFLGSLSITAGSAYYLHRSALVTRMMSGNPWVVFAGSMAALIGSSMACRSIEYEAGLNAKHLAWGVHSGVVGLVVAPLMFLGGPLILRAATYTAGTVAALSLTAACAPDEKFXXXXXXXXXXXXXICVASLGGMFLPATSAAVPVIQSLVTYGGLVVFGGFMLYDTQKIIKKAELA-TYSGKKYDPINASIGIYMDTINIFIRIAMIMA 1380
            F+ +++G+  + G AA G+GALC+YGLGLSN++GAI+KA  WP  ++  I STY+Y  GS+ +TA SA  + R+ ++   M    WV    + AA++G+ M  RSI Y+     KHLAW +HSGV+G VVAPL  LGGPL++RAA YTAG V  LS  A CAP EKFL+ G PL +GLG + V+SLG MFLP T+ A   + S+  YGGLV+F  F+LYDTQK+IK+AE++  Y  +KYDPIN+ + IYMDT+NIF+R+A ++A
Sbjct:   75 FKIDQMGRWFVAGGAAVGLGALCYYGLGLSNEIGAIEKAVIWPQYVKDRIHSTYMYLAGSIGLTALSAIAISRTPVLMNFMMRGSWVTIGVTFAAMVGAGMLVRSIPYDQSPGPKHLAWLLHSGVMGAVVAPLTILGGPLLIRAAWYTAGIVGGLSTVAMCAPSEKFLNMGAPLGVGLGLVFVSSLGSMFLPPTTVAGATLYSVAMYGGLVLFSMFLLYDTQKVIKRAEVSPMYGVQKYDPINSMLSIYMDTLNIFMRVATMLA 338

The following BLAST results are available for this feature:

BLAST of TCONS_00073057 vs. Swiss-Prot (Human)

BLAST of TCONS_00073057 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
GHITM	4.863e-71	51.89	Growth hormone-inducible transmembrane protein OS=...	[more]

You are here

TCONS_00073057 (transcript) - C. hemisphaerica