TCONS_00073051 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073051
Unique NameTCONS_00073051
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1423

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073051 ID=TCONS_00073051|Name=TCONS_00073051|organism=Clytia hemisphaerica|type=transcript|length=1423bp
GGAAAAGGTCAGTATATAAGaccgaaaatgaaagtgaaagtgaaattgCG
TTTTGAGCCAGATTCCAGGAAGAATACACAGTCAGTCGTCTCTTGCACAT
CTAACACAGTGATATTTTGAGATAATGGATACACAAAGTGTATTCTTGTT
GGATGGTGAATTAAGAATTCGACCATATGTCAGCAAAGTTCAATTGAAAG
AAATTGCATTAAAATGTTTTGGCCTTGAACTTGATGAAAATGTTAAACCA
GTGGAAATGGTGTCCTATGATGATAGAAACTTTCGGGTTCAAGGTCGACT
GAAGAATGATGACATCACAAGAAAATTcgttctgaaaattttcaattttg
gatcAGCACCAAAACTTTCAATGGAGCTAGCTGTTGATCTATTAATACGA
TGTGGGAGAAGCAAAATCAGAAGGCGATCGTGGAGGTTGGATATGGAACC
TTGTGACGTGTCCTCAGTATCTTACCGAAGATTATTTGAGCACCTGTATC
AAAGATCACGAGCAGAGAAAAGTGTTATCTTCTATTATAAGAGAGTTCGA
AACTGAAACGTTACCTCTGctgaaaaaacatttaaaaatgtcATACATAC
ATAATGATTTGAATGAAGCCAATCTTTTGGTAAGTGCTAATGATAGCATT
GATGGAGTAttggattttgatgatatagcaTGGTCGTTCCCGGTTGTCGA
TTTGGGTATTTGTATGATGTATTTATCCTTAGCATCTCAAGAAGAGGAta
tatttcataatttgaatcTACTTTATAAAGGATTTACATCCACACGTTGT
TTAAATGATGTCGAGGATTCGGCATTGTATAATATCTGTTTATTACGGTA
TGCAGAAGTGACTGTCATCTCACTTTATCAACATGAGTTTGTTGACCCAG
ATAATGATTATTTGCTTCTCCATacggcagataattttaaaagaataGAT
TATCTGAGATCGGCAGGTCCAACAATATTTAAAAAGAGAGTTTGTTCAGA
AGATTGAGACAAGTTTCTGTTCCTTTCCTTCTTCATTACTTCCCAATACA
ATAACAACATGTTTGACAACATTGTATTCTATAATAAAGGATTAATCTAA
TACTCTACTGATATccaattttaaaaacacttccTTGCCACAGAACCTGT
GGATAATTCTGTTTCCGTTAGGAAATCCCCTAAACTTGAGAGAAACAGTA
CAATGTTGAGAATTATATCACTACCAAATACCAAAAGGGATTGATCCTTT
TAATACACAACCCCTAATCATAAAGCAACAATCATCGTATGtttcttttt
ctaatttgaTAGTTTTCTTTTCGGATTTTGGTTTGTACATTTAAATCAAA
CTGTATTTAAGACTCTTATAATTTTGCTTAGAATTTTAAAATATGTTAGT
GAGAAAGATAATCACGAGAGGAA
Run BLAST on NCBI

transcript from alignment at scaffold_86:1029767..1036173-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073051 ID=TCONS_00073051|Name=TCONS_00073051|organism=Clytia hemisphaerica|type=transcript|length=6407bp|location=Sequence derived from alignment at scaffold_86:1029767..1036173- (Clytia hemisphaerica)
GGAAAAGGTCAGTATATAAGACCGAAAATGAAAGTGAAAGTGAAATTGCG TTTTGAGCCAGATTCCAGGAAGAATACACAGTCAGTCGTCTCTTGCACAT CTAACACAGTGATATTTTGAGGTAGGTTTCATTTTTTGTGAGCTAGTCTT AGTAGGTGACACAGATTTTTTGAAGAAAATGTCCCAATTTTAGAACATAA GAACATCTCATTCACGAAAATTTTTAAGCTAATTGAAAAAAATATCCCGG CTGAAAATTTTAAAACTGTTGCAGAAAGATTTATGATTTTTAAAATAGTC CCTGAATGAATACCGTGAAGTCGAGTAACTTGCATCAGTGGAGGGAAACT TGCATAGCCATCAAATGACAGAGCAATCAAAGCAGAAAAATTTCAAAACA AATGAACTACCGTGAGATTGGGTAACTTGCATTGCATCAGTCAGTGTATA GACCTAAAGCTCTAAAACAGCATCTAATAACATGAAAACCAGAATATGAT TCTTCAATGGGAATCAAAACTATAAAGTGCACTTACAAACATCAATTTGT CAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAACCG CACTGTCATCATTGACAATAAAACAAACGATTTTCTGTCAAGAGCCTTGT AAACATTCCAACAACTTCCATCGAAATGATCTATCACAACTCAGTCTACC ATTTTTAGCGCGATCCGAGGATTGAGCTGAGAACGCTCCGCGAACTCCTG CGCGGATGAAAAACTTCAATCTGCCAATCATTTTCTCAAGCGAAGAGTAC GCGAAGCGATTCCAGCTTTACGATAGTGCCGCGTGTCATCAATGGATAGT ATTCAATTATCATTATCCCTTTATTTTCATTCCTAGAACTTTTGCGAAAA AAAGGAAAAATAGAAAAGTTGTATTTTTTACTGCTCTATTCACATACTGA ATTTGAAAGATCTTCTATGTGGCGTTTTTTTGCAAACTTCAAAAAACTGA TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNCGCCTTTGCGGGACTTTGGCTTAAGTGC TTGAGTGCAGCATAGGGTACAAAGTCCAAACATGCGTTTCCCGTAATTTT TGTGTGAAGAGTTAGGTCTATACTGTCAGTGGTAGACAGGAGACCCGTCG TGTTTTTTTTTATAATTTGATGTACACAAGCAGACAAGACAGGTTCGAGC TGTGAGTCCAATATATTGGATAAACCAAATTTCGAAAGTTGCGCTTTCTC TAAGAAAGTGTGACCAGTAAAAGAATAGGCCGTTCGTAAAAAATTGTTTG GTTCCCGTCACCCGACGGACCGTGATTTCTACTGAAAAATTCTCATTCAC ATTTTCCTGACAGCTGAAACTCCACCATCACCATCCATGTTTTCTTTTTT GAGAGAAAGAGCAAACGCTAATCTCGCCCAAAAAAACAATTCGAAACCTG TTAATTCTGTTTTTTCCTGATTTTCAAGTCCGATTTTTCATTGCGGACCA TATGGAAGCATCAAAACAAACCAGCGGAGCTTTTGTAAAATGAACAAGAG GCTTAGGGCGATCAAACGTTTGTTTACCACCCTTTTCTAAGGAAAATTCC GCCCTCTTGGACTGTTTCGTTCAAACAGAAAATATTTTTCGCCCGACCGA CCGACCGACCCACTTTTTTATGACTGGAATGACGGGAACCAAGGGATTTT TTACCAACGGCCATAACAAAATTTGATTGGCTATGTTTTCAACCGTTATT AGGTTCTGAGGAATTCAAACTCTCAGCCCGTACCATGCTATACATTTCGC CATCAGTTTATCAAAGAAGAAATCATAGCATGGATTCTCAGGCTACATCA GTGGAGGCAAACATATATAGCCCTCAAATGAATGACCTGTCTGCCTGGTC ATTAAAATACAACTATGCAGCTCCGCTCACAGCAGCTCTACTCTACCATT TTTGTTTTGATTTAGCTTTGTATTTTAATGACCAGCCAGGTCATTCATTT GAGGGCCATGCATGTTAGCCTCCACTGATGCAAGTTACTTAAAAATAAAA TAAAATTTGACACCTAGAAATTTTAACTTAGAGTAGACATTTGACACATT TCCAATTCAAATTTATTTTTTATCTTTAATATATCATTTGAACGGTATAT ACCGTAAGTTGGCCTAATGNTTTTTATCTTTAATATATTATTTGAACGGT ATATACCGTAAGTTGGCCTAATGTCGACATCCCTCTTCTAATAGACCTTT TTTCAAAGAGGCCACCCTGTTGAATAATTATGTAGTCCAGCAGAAAAACA ATGATAAAACCATGCATAATTATTACAATATGCATGATACAGTAATTATG CATGGCTCTATCATTGTTTCTATGGCTGGACTACATAATTATTCAACAGG AAGTCATCTTTGTTAAAAGGTCTATTTCGACATCCTTTAGAGATAGGAAT AATAGGAAGGTCGGAATCACTGATGGACTCCTCAACTGATCGCTTAGCAA AAAAAATAAGTTTCAATAAGCGATTCCGACCTTCCTATCATTCATATCTT TAAATAAGGATGTCAAAATTAGAAGAGGGATGTCGAAATTAGACCAACTT ACTGTAACTCATTGAACATTATATTTTGTATAATACAATGTGTTGTCTGA TCTTATCTATATCAGTGAAAGGTTTTAAACTGCGTTTTATTCTTATCTTT TCGTTACAGATAATGGATACACAAAGTGTATTCTTGTTGGATGGTGAATT AAGAATTCGACCATATGTCAGCAAAGTTCAATTGAAAGAAATTGCATTAA AATGTTTTGGCCTTGAACTTGATGAAAATGTTAAACCAGTGGAAATGGTG TCCTATGATGATAGAAACTTTCGGGTTCAAGGTAAATATTAAGGTGGTTT TTTTTCAACTTCAATTGCTGAATTGAGCTAGAATTAGTATAGTTGACGCT CTCTAATTCGATCTTCAAGGGGAATTGGATTTGCATCGAATAAGGGAGCG TGGGTTATGAGAGTTTCTTGTTGACAAGGACTTTAAATTTCATCAAATAA GGGAGCTCTATCAAATAGTAGAACGTCGAATTAGAGAGTGTCAACATTAT ATGTATTTCAACTGTATATATACACTTTAGCAAACAGAAACTTGAAAGAT CTTCGGAAACTTTGGCCCTTATTGTATAGGTTTACGCGTTTGATTTTTTA GGAAAGTTTATAAATCATTAAAAAGTATATACAAAACCTGAAACTGTAAC TAATATTTTCACCTTTCAGTCTTCTTAAACTTGCACTTTAATAGCTGTTT TAAATTTATTATGAATCAATAAATTTTTGTCAGTATTTGAAGTTACTGCT CTGCTTCAGTGGTGGCTGAAGAACTGTTTAATGTGCAAAAATTTTCAAAT TTCAAAGATCGATTTTGTAAGATAGAGCAACAGGCAACATTTTGCCATTN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAATTTTTGGGAAATTTT CAGGAGAGATACATAAAATTGTCATTAATATCATGTTCAAATATCTAAAA CATTATCTTTAAAGGAAAGAAAAAAAAATGGCAATGTTTACATTTCTCTA ACCTTCCACAGTACTAAAGTGAGCATTTTTACCTACCGCCTCTACGGTGG AGATGGCGAGACTGTTAAATGGTGTATTGTCCAATGATTGAATGAATGTG CAAATTTTCCAATTTTCAAGTTTGTTTCCGTTTTTTACCGAAAAAGTTCC CGATTTACTGAAAAATTGGGTTTGCGTGAATTGGAAAAAACGTTTGCGTG ATTGCGTGAATTGAGGGTTCGCTGGGGGAGAAGGCTCATTCACATTGACA TTTTGTTAGCAAATACCAATTTAAAATTCCGACCAAATTTTTTTTTAATT TTTACTCTTTTCTTAATTAATCCCCCTATGAAAGTTTAAAACCCCAAATT TTATCCGTAAAAAAAGTCCCACCCCTTCCCTAACAAGCCTTTCTCAAAAT CATAATTGGAAGGCTTTCTATATTTGAAACACATTGTTTTTACATCTTAG GTCGACTGAAGAATGATGACATCACAAGAAAATTCGTTCTGAAAATTTTC AATTTTGGATCAGCACCAAAACTTTCAATGGAGCTAGCTGTTGATCTATT AATACGATGTGGTGAACAATGTTCTGATTATTTAAAAGTCTCTACACCAA TCAAATCTTTACAAAACGGTCATTCTACTGAAAATGTTGAATTTATTTCA AGTTTTGATATTCCTGTACTTGAATTTGCATCATATAATAATTGCACAAA AGAAGATTTGATTGAAACAGGGGCACTGAGAGTTGGTACATCAGGAGAAG TGACTTGTCGCCATCATGTGAGACTACTGACTTATCTTGAAGGAAGAGTT CCTGATTTTTGTAAAGACAATCTTACAGACTCTTTCGTTCGACATTGGGG TGCAACTTGTGCAAGAATTTGTAATGCATTTGAAGTGAGTGATTTATTTA TTGCACCACCCGTCTTTTCTAAACTCCATGTTAGTTATTCCAATGGGGAA TATCTTTCGGTCTATGGTATCCGAAATAATATGTAGCACTGTCTTTGGTA AAACAAACCCACCTTTATCAATACTAAAGGCTTAGGGACACGAGAAGTTT TTTTCACGTTGAGGCAATGCAACATGCTCCATCCCACCAACCTGAAACGC TTTCTCAGGTTTCAACCCCATTTTCCATTTAATAACATTTATGCTTCTCT CACTTTTGTCCCAGGGACAAAATCAACGTGTCTTTTGGGTAAATTTCCCT GCATTGCACCAACGCGAAAAAAACTTCTCATTTCCCCAAGCCTTAATATA TGTAATATAGAAACTTTTCACATATTTTTTGTCCTTAGGGAGAAGCAAAA TCAGAAGGCGATCGTGGAGGTTGGATATGGAACCTTGTGACGTGTCCTCA GTATCTTACCGAAGATTATTTGAGCACCTGTATCAAAGATCACGAGCAGA GAAAAGTGTTATCTTCTATTATAAGAGAGTTCGAAACTGAAACGTTACCT CTGCTGAAAAAACATTTAAAAATGTCATACATACATAATGATTTGAATGA AGCCAATCTTTTGGTAAGTGCTAATGATAGCATTGATGGAGTATTGGATT TTGATGATATAGCATGGTCGTTCCCGGTTGTCGATTTGGGTATTTGTATG ATGTATTTATCCTTAGCATCTCAAGAAGAGGATATATTTCATAATTTGAA TCTACTTTATAAAGGATTTACATCCACACGTTGTTTAAATGATGTCGAGG ATTCGGCATTGTATAATATCTGTTTATTACGGTATGCAGAAGTGACTGTC ATCTCACTTTATCAACATGAGTTTGTTGACCCAGATAATGATTATTTGCT TCTCCATACGGCAGATAATTTTAAAAGAATAGATTATCTGAGATCGGCAG GTCCAACAATATTTAAAAAGAGAGTTTGTTCAGAAGATTGAGACAAGTTT CTGTTCCTTTCCTTCTTCATTACTTCCCAATACAATAACAACATGTTTGA CAACATTGTATTCTATAATAAAGGATTAATCTAATACTCTACTGATATCC AATTTTAAAAACACTTCCTTGCCACAGAACCTGTGGATAATTCTGTTTCC GTTAGGAAATCCCCTAAACTTGAGAGAAACAGTACAATGTTGAGAATTAT ATCACTACCAAATACCAAAAGGGATTGATCCTTTTAATACACAACCCCTA ATCATAAAGCAACAATCATCGTATGTTTCTTTTTCTAATTTGATAGTTTT CTTTTCGGATTTTGGTTTGTACATTTAAATCAAACTGTATTTAAGACTCT TATAATTTTGCTTAGAATTTTAAAATATGTTAGTGAGAAAGATAATCACG AGAGGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045294XLOC_045294Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073051-exon-scaffold_86-1575043694:1036053..1036173TCONS_00073051-exon-scaffold_86-1575043694:1036053..1036173Clytia hemisphaericaexon
TCONS_00073051-exon-scaffold_86-1575043694:1033093..1033264TCONS_00073051-exon-scaffold_86-1575043694:1033093..1033264Clytia hemisphaericaexon
TCONS_00073051-exon-scaffold_86-1575043694:1031513..1031623TCONS_00073051-exon-scaffold_86-1575043694:1031513..1031623Clytia hemisphaericaexon
TCONS_00073051-exon-scaffold_86-1575043694:1029767..1030785TCONS_00073051-exon-scaffold_86-1575043694:1029767..1030785Clytia hemisphaericaexon
TCONS_00073051-exon-scaffold_86-1510915933:1036053..1036173TCONS_00073051-exon-scaffold_86-1510915933:1036053..1036173Clytia hemisphaericaexon
TCONS_00073051-exon-scaffold_86-1510915933:1033093..1033264TCONS_00073051-exon-scaffold_86-1510915933:1033093..1033264Clytia hemisphaericaexon
TCONS_00073051-exon-scaffold_86-1510915933:1031513..1031623TCONS_00073051-exon-scaffold_86-1510915933:1031513..1031623Clytia hemisphaericaexon
TCONS_00073051-exon-scaffold_86-1510915933:1029767..1030785TCONS_00073051-exon-scaffold_86-1510915933:1029767..1030785Clytia hemisphaericaexon
TCONS_00073051-exon-scaffold_86-1491911889:1036053..1036173TCONS_00073051-exon-scaffold_86-1491911889:1036053..1036173Clytia hemisphaericaexon
TCONS_00073051-exon-scaffold_86-1491911889:1033093..1033264TCONS_00073051-exon-scaffold_86-1491911889:1033093..1033264Clytia hemisphaericaexon
TCONS_00073051-exon-scaffold_86-1491911889:1031513..1031623TCONS_00073051-exon-scaffold_86-1491911889:1031513..1031623Clytia hemisphaericaexon
TCONS_00073051-exon-scaffold_86-1491911889:1029767..1030785TCONS_00073051-exon-scaffold_86-1491911889:1029767..1030785Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_86supercontigscaffold_86:1029767..1036173 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.571568 0 0 0.507958 0.565734 0.14845 0.158087 0.260789 0.37071 0.228716 0 0 0 0 0.136531 0.0725299 0 0.0983892 0 0.616391 0.181383 0 0 0.210079 0.545686 0.318826 0 0.480018 0 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073051 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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