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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073047 ID=TCONS_00073047|Name=TCONS_00073047|organism=Clytia hemisphaerica|type=transcript|length=3157bpRun BLAST on NCBI protein sequence of TCONS_00073047-protein >TCONS_00073047-protein ID=TCONS_00073047-protein|Name=TCONS_00073047-protein|organism=Clytia hemisphaerica|type=polypeptide|length=802bp MSTAHMSPQEEQDKLLEEALQVVKSQSFQMKRCLDKVKIMDALKHGSNMLRun BLAST on NCBI transcript from alignment at scaffold_86:936682..952763- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00073047 ID=TCONS_00073047|Name=TCONS_00073047|organism=Clytia hemisphaerica|type=transcript|length=16082bp|location=Sequence derived from alignment at scaffold_86:936682..952763- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_86:936682..952763- >TCONS_00073047 ID=TCONS_00073047|Name=TCONS_00073047|organism=Clytia hemisphaerica|type=CDS|length=38544bp|location=Sequence derived from alignment at scaffold_86:936682..952763- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00073047 vs. Swiss-Prot (Human)
Match: VPS35 (Vacuolar protein sorting-associated protein 35 OS=Homo sapiens GN=VPS35 PE=1 SV=2) HSP 1 Score: 1159.44 bits (2998), Expect = 0.000e+0 Identity = 586/805 (72.80%), Postives = 687/805 (85.34%), Query Frame = 1
Query: 82 MSTAHMSPQEEQDKLLEEALQVVKSQSFQMKRCLDKVKIMDALKHGSNMLGELRTSLLSPKSYYELYMKVSDELRHLELFLLDEFSKGRKVNDLYELVQYAGNIIPRLYLLITVGIVYIKFGDVAKKDVIKDLVEMCRGVQHPLRGLFLRNYLLQSTRGLLPDDTENTSE---GTVKDSIDFILLNFAEMNKLWVRMQHQGHSXXXXXXXXXXQELRILVGTNLVRLSQLEGVDVDIYKRDVLPGVLEQCICCRDPIAQEYLMECIIQVFPDEFHLQTLNAFLKACAELHQDVNVKNIIIALIDRLAMFAHRDDGPGIPNDIRLFEIFSQQVANVVKSRSDMPTEDIVALQVSLINLALKCYPDRVDYVDKVLEYTEEIFSKLNLAHIDKNNAVSKELMRLLKIPVDNYNNVLTILKLKHFAPLFDYFDFATRKEMAMYVINNALDSDTFIPSQEEVDSILQLAAPLVMXXXXXXXXXXXXXXFAEEQGLMGRFVTLLYSDNPDQQYLILNTARKHFGNGGEQRIKWTLPPLVFAAFRLAFIYRDQQEHDDKWDKKCQKIFQFCHQTICALSKAEYAELSLRLFLQGALAADQQRFTNAETVAYEFMSQAFAIYEDEISDSKAQLAAITLIIGTFERATCFTEENHEPLRTQCALAASKLLKKPDQCRGVSSCSHLFWSGRVYXXXXXXXXXXXXXXCRDGKRVMECLKKSLRIANQCMDPTVQVQLFVEILNRYLYYFEKGNEAVNSAILNQLIGKIREDLPGLEVSDEMEQITKHFNNTVLHIQSKKENGTEQETEMYKDVSL 2487
M T SPQ+EQ+KLL+EA+Q VK QSFQMKRCLDK K+MDALKH SNMLGELRTS+LSPKSYYELYM +SDEL +LE++L DEF+KGRKV DLYELVQYAGNIIPRLYLLITVG+VY+K ++KD++KDLVEMCRGVQHPLRGLFLRNYLLQ TR +LPD+ E T E G + DS+DF+LLNFAEMNKLWVRMQHQGHS+ +EKRERERQELRILVGTNLVRLSQLEGV+V+ YK+ VL G+LEQ + CRD +AQEYLMECIIQVFPDEFHLQTLN FL+ACAELHQ+VNVKNIIIALIDRLA+FAHR+DGPGIP DI+LF+IFSQQVA V++SR DMP+ED+V+LQVSLINLA+KCYPDRVDYVDKVLE T EIF+KLNL HI ++AVSKEL RLLKIPVD YNN+LT+LKLKHF PLF+YFD+ +RK M+ YV++N LD +T I SQ++VDSI+ L + L+ +Q DQP E DPEDFA+EQ L+GRF+ LL S++PDQQYLILNTARKHFG GG QRI++TLPPLVFAA++LAF Y++ + DDKW+KKCQKIF F HQTI AL KAE AEL LRLFLQGALAA + F N ETVAYEFMSQAF++YEDEISDSKAQLAAITLIIGTFER CF+EENHEPLRTQCALAASKLLKKPDQ R VS+C+HLFWSGR +K E GKRVMECLKK+L+IANQCMDP++QVQLF+EILNRY+Y++EK N+AV +LNQLI KIREDLP LE S+E EQI KHF+NT+ H++ ++E+ E E +Y+ + L
Sbjct: 1 MPTTQQSPQDEQEKLLDEAIQAVKVQSFQMKRCLDKNKLMDALKHASNMLGELRTSMLSPKSYYELYMAISDELHYLEVYLTDEFAKGRKVADLYELVQYAGNIIPRLYLLITVGVVYVKSFPQSRKDILKDLVEMCRGVQHPLRGLFLRNYLLQCTRNILPDEGEPTDEETTGDISDSMDFVLLNFAEMNKLWVRMQHQGHSRDREKRERERQELRILVGTNLVRLSQLEGVNVERYKQIVLTGILEQVVNCRDALAQEYLMECIIQVFPDEFHLQTLNPFLRACAELHQNVNVKNIIIALIDRLALFAHREDGPGIPADIKLFDIFSQQVATVIQSRQDMPSEDVVSLQVSLINLAMKCYPDRVDYVDKVLETTVEIFNKLNLEHIATSSAVSKELTRLLKIPVDTYNNILTVLKLKHFHPLFEYFDYESRKSMSCYVLSNVLDYNTEIVSQDQVDSIMNLVSTLIQDQPDQPVEDPDPEDFADEQSLVGRFIHLLRSEDPDQQYLILNTARKHFGAGGNQRIRFTLPPLVFAAYQLAFRYKENSKVDDKWEKKCQKIFSFAHQTISALIKAELAELPLRLFLQGALAAGEIGFENHETVAYEFMSQAFSLYEDEISDSKAQLAAITLIIGTFERMKCFSEENHEPLRTQCALAASKLLKKPDQGRAVSTCAHLFWSGR--------NTDKNGEELHGGKRVMECLKKALKIANQCMDPSLQVQLFIEILNRYIYFYEKENDAVTIQVLNQLIQKIREDLPNLESSEETEQINKHFHNTLEHLRLRRES-PESEGPIYEGLIL 796 The following BLAST results are available for this feature:
BLAST of TCONS_00073047 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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