TCONS_00073044 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073044
Unique NameTCONS_00073044
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1440

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073044 ID=TCONS_00073044|Name=TCONS_00073044|organism=Clytia hemisphaerica|type=transcript|length=1440bp
GTTTCAACGCATTAGAAGAAAGAAGGGCTCCAGGGAATAGTGCGTTAACA
GAAAGGAATAGACCAAGGagaggaaaaacttttaaattcttCTTTTAAAA
CACAAGggTAAAACTTGAATCATTATATCATTGGCCACTCAAAGGTGAAC
ATAATGACTGGTGCTGAATTTTTAGAACGTTCAAATGGTTTATTTGGTGG
ACCTAAGAAGTTATTTGAAGGTGAGCGGCGCTTATCCAATCTAGCGCAAC
AGACGCAATTCCCATCATGGAACACGCTGAAAAAGCTGAAGCCATCAAAC
GAAGAAAGAAAGAACAGTTATAAGAACAGGAACACCAAGGATGAAAGTGA
AGGGAAAGATTTGATCCAAAAGAAGCAAAATTCAGATCATTTAAATGaag
aacaaatcaaacaaaatcctAAGGTTGATCCTACAGAGGATTTACTGAAG
GATTTATCAAGGATTCATTTTGATCGAAACAGACGATCGAGTGATTCATC
AGTTATAAACCGCAAAAtggaggaaaagaaaaagaagttaAGCCCAAGCC
ATTACAAAGGAAAAAGGCGTGGGACGTACGCAGCCGTTTATGATCCACGC
GTTACGTTAACGCGACCACGCTCAGATACACGATCCCGATCTTTGTTCAT
AAAATCGGATGAAATGGGTTCCCCATCACAGTCCGATTTACGAATCCGAT
TATTAAAATCTTTccataacaacaaaagtttgaGTTTGAGTGATGCATCT
TTATCTTCCGATGAAGAAGGGGCGGTcattaaaaacaataacaatcaaCT
CCCGAGGGCGTCAACAGTGGGCGCTACACCCTGTCAAAAGAAACACCGTC
ATCAATATAGCTCTAGTGGACAACGAGCACAATCGACTATAAGTCACCTA
CCAAAAGAACATTTAGAAtatcttgaaagaaaatatgaaGAATCAAAGTT
GAAACAGAACCTGAACGAGAGccaagaattttctgatactttacACAAAG
CATGTAGAGAgggaaattatgaaaaaattcaagaactTATAAATGATGGG
CAAGATGTAAACGAATCAGACATTTTTGGACATGCGCCATGTTATTACGC
CATTTTAAATGGGCATTTCGAATGTGTTTCTTTATTAGTTTCAAACGGCG
CTAATTTGGACGATTATTTTcagaaacaaaaacaacagTATTTCAGTCAC
TGTTGAATAATTTTAATATGGTTGGAAAGAGAAGTTGGTCCCACATTGTG
AATTGTTTCTATTATTTTCCAGATTCAAGATCTATGTTTAAAAACCTGTA
CAGTTTaattcaaattctccttatcgtaatttttgtatatttctagATGA
TCAATCTTATTGTCTGTTGTTCTGCATAATTTTTAGTTATACATATTGTA
GATAGTAAATAAAGGTTTAAGAAGACATCTAATAGTTCag
Run BLAST on NCBI

protein sequence of TCONS_00073044-protein

>TCONS_00073044-protein ID=TCONS_00073044-protein|Name=TCONS_00073044-protein|organism=Clytia hemisphaerica|type=polypeptide|length=350bp
MTGAEFLERSNGLFGGPKKLFEGERRLSNLAQQTQFPSWNTLKKLKPSNE
ERKNSYKNRNTKDESEGKDLIQKKQNSDHLNEEQIKQNPKVDPTEDLLKD
LSRIHFDRNRRSSDSSVINRKMEEKKKKLSPSHYKGKRRGTYAAVYDPRV
TLTRPRSDTRSRSLFIKSDEMGSPSQSDLRIRLLKSFHNNKSLSLSDASL
SSDEEGAVIKNNNNQLPRASTVGATPCQKKHRHQYSSSGQRAQSTISHLP
KEHLEYLERKYEESKLKQNLNESQEFSDTLHKACREGNYEKIQELINDGQ
DVNESDIFGHAPCYYAILNGHFECVSLLVSNGANLDDYFQKQKQQYFSHC
Run BLAST on NCBI

transcript from alignment at scaffold_86:889619..896013-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073044 ID=TCONS_00073044|Name=TCONS_00073044|organism=Clytia hemisphaerica|type=transcript|length=6395bp|location=Sequence derived from alignment at scaffold_86:889619..896013- (Clytia hemisphaerica)
GTTTCAACGCATTAGAAGAAAGAAGGGCTCCAGGGAATAGTGCGTTAACA
GAAAGGAATAGACCAAGGAGAGGAAAAACTTTTAAATTCTTCTTTTAAAA
CACAAGGTAGGTAAAGTCTCAGTTATATTTATACAATTAACTTTCGTAGA
CACAAACCTTTAAAATAGAAAAATCTCGTGAGAGTTTCTACTCAAGGGTC
CTCTTGGGTCCAAGACAGGAGCATAAGATGTCCCCTCCCTCTCCTCCATC
TCGAAAATTCCAAAACATGAATTTTCATGAAAGTTTATTTTAGTCTAGTT
TATTTTGTACTTTATTGGGCATGAACATATCAACGACTGGACTATCTTAT
ATTGTCTCTCTGTCATTCTGATAGCTTCATTCGTACATGCTCCTACTACT
GATCTCGTATTCTCTTTGTTCTCATACGTTGGGCGTTGACTGAGGAAGGC
TGTCACTGACCTTTATATATCCCTAGACCGAGCTATATCCACCATCTTTG
ATGGCGTCTACATCACCGTCTAACGGCGATACATCATCAAAAGTTTTCGA
GGGAAAGTAGATCTAGCACTCTCGATGCATTTACACCGCTATTGAGTAGT
GCCGCAATTAGGGTACCACTTTTCAAAAAATTCTGATCAAAGATTTTGCT
TGGCCAGCATTTAGAAACTTGGTTCAGGGTATATAACGGTCAGAGGCTGT
GAGGTTTTAAATCTCTTTCTAATACCTCTCGACTAAAACGTTTAGAACAG
GATAAATTCTAACTTCTAGGATAATATCTACCAATCAGAACTGTGGAATG
AAGGCTAGTGAGAACTCTTATTAATCGTTGTAGGCTATCTACCACTTTTC
TTGACTAGGCTGCCACCGTGGAGTTTTAAACCGTACTGTCAGGAGCCCAT
TATAAAAAATTTCATGAAAACAAATTATTTTCAAAACATGAATAAACGAG
AGCCTTTTTGATACCACAACTCACAGAATCCCGAGAAGTTTTCTAAACAC
CGCTTTTTCACAAGCAGCTACGTCAATGACAATAGACACTTTTTTATGTG
CCGCAGCTGTGTAGGCGTAGAACCAAAGTCTAACACCTTCTCCCGAATAA
AGTACGTCACAAATAGTTCTGTAACCAGCTTAAATGCGTGAAAGTTTTTT
CGTCAACTTCGAAACGAAAACAAACGTGTCTCTGATCATTTCCTATGTCA
AGAAAGTACTTTAAACTTTCAAAACATTTCTATTGTTGTCTGTGGTAACT
TGAAGTTATTTTTGAAGTCCATATTGCGTAGATAGGTGGCATGGGTTTTT
TCTTATTGAATTTAAGGTACTCGTTAACACTGCTTGTTGTAAAGGGGGTT
TTCATATTGACTTGGAACTGTGAGGTGGTTAAAAGAGGCGTAAGTATTTA
GAAGTGATAATGAATTACTTTACTTGACTAGAATTATCATTATTATTTAG
ACTAACAGAGTTGTTGGCGGAGGAATTGGCAATATAACACCCTTGTCTCT
GTGAGAATGTTCTGAAATAGTTGGGGCAATAACGATGGTAAGTGGGATGG
GGGGGGGGGGGGAATATCTCTTAATCTTGATTCGTTGTAAATCTGTTAAT
TTAATTCGTAGGAAATCAGTGTACCAGTCCATAAGATTTATCATCTTGAT
GGGATAAGATTGCAGCATATTTCGTCAGTTACTGCTGTTGATAGAAAGAC
CAACAGGTTCAACTACACGATAGTTCTCAAAATTAATTGAGAAAATTAGA
TCCGAAAAAAAAATTGAAAAGACCTAACAATATATTTGCTTAAGAGGCTT
TGGGGTCTAATTTTAGAGACTAGTCACGTGAAAATTCAAAACCTTATGAA
AGTAATACGATACCTTGTCAGCGTAACCTTTGAAATTGCGTGATTAAATA
TTTTACCTAAATTATTAAAAAAAAATTCAACAGTATTTACACAACTTGTG
TCAAAAAAACTTGAGAGAGATTTATGTCGTTTTATTTGCCACGCTAGATA
AACAAATTACACAAGTAATCTTGAATATTGCATTAGAATAGAACCTTGAG
GGATTGGATAGCTTATCTGTCCAGCTTTATTTGTATTTTAAGAATCAGTA
ATTCTCGAAATTCAAATGTTAGTAAAACGTTTATAAGACTATTTGTAGAA
GTTAACGTTCATTCGAGGCTCAAATGACATCCATCTAATTTTATAGCGGC
TAGCTTTAGCGTGAGCGTTTTTACAGAGCAAGTTTAACCAACTCCAATCA
CTACAGTATCATATATATGTGTGATAAATACTTTCTGTGTAGGTCAGATG
TAAATATTGCGAAATTTTAAGCGTGAAGTTTGATTAGGCGCTCAGTTGTT
CGATCTTGATGCTGCATTTCGAATTCTAATTTTCAGTACAATGGGTTGAT
GGTATAGATTGCTGTAGATTTTGGCGTTGATTGATAGAAACACTACATGC
GAGGTTCTAGACACAACAAAATTCACAACCCAGTAAAATTGAAAGGTTTA
TTAGTTGATGAAGTATGAGATAATATTGAGGACACAACAGAAGGCTCTCA
CAAAATCTGTAAAACAAGGATATTTTACGTAAAATATATTCGAGTGATCT
CAACCTCGTCCCCGTGTATCCCAGGCTTTATCTACATTACTGATTGACGC
CAGAGAATATTATCTAGCGCTATCAGTAAGCATCAAAAAGCGTAACGAGG
TTGGGGTGATCTATTATGGGTAATTATTTCATATTTTAAGATGGCTTATG
AGTTTTGTCTGATTGAAACTTTGATTGACCTTTTCTTTTACGACGCATGT
TTTTGTATCTTGTTGAGAAAAAATTCAATCCTATGTGACCGATTGATGAG
CATGGGTGCTTACTTAATGTTTATTTCAAGAAAGGTCAACTTTTTTTCTG
TGCTTTGCTTGTTTTGGTAAGTACATGGCTTGAAATGACGTTGATGATGA
TTGGAGATGTTTTGGACAGTGGCAATCGAAATTATAAGAATTCTAATGTT
TTCAGACAGGGAAAACACCAAACATTTACGAGATCTTTCNTGGAGATGTT
TTGGACAGTGGCAATCGAAATTATAAGAATTCTAATGTTTTCAGACAGGG
AAAACACCACACATTTACGAGATCTTTCGCTCATTTCTTTGAGCATTATC
TAGTCTAAAAAGTAGAAAAAACACAGATTAATAAGTCAAATAAAAGTCAA
ATAAATCAAAAAATCAAAAATAGTAATTCTAACGTTTATGGTTGGATTTC
CAAAGTTTATGCCTTTTTCAGTGGATACTATTTCCTAGAGTTTTGTACTT
TTGCACTCCCACAGCTCCGGTATAACGTTTCCAACAGTGGGGATTAAATT
TCTATGGGAATGGAAATTCCTATTGTTTCTAGGTCAAAAATCCAGCGGAG
ACGGTTTTGGAGTGCAATTTTTTCACATTGAATCTTAATTAGGGATGAAA
ACAAAAATTAAATTTCCAGTGGGGCTGAAATTGTAGGGGGTATTTTTCCG
AAATGAGACGACGAAATTTTAGGCGATTTTTCCGTCCCACTGGGTCTGTG
ACACAGGGGTGAATTACCAGAGACGGTTTTCGGGCTATGTTTTATGATTA
GTGGGGTTTTAAGTTAAGGAGTAGCTTTTTTTTTCAGATGAAACATGAAG
TTGTTTCGATTTCAATCTCGAACATTTTATGGACATTCTAGAAACGTTCA
TTGAATTTTGAAAACAACATCTTTCGACCAGCATGATACAGACAGTCGGA
CGCTTTAGCCGATGGTCTTGATAATTCTGAGAGCCGGATGTTAAAATATT
TTCTTAGATCCACTCTCATATTTGCGGTTAAATATTCTTACAAAAACAAG
CGCATAACAATCATAGCACATAGATATAAAAAGTTTGTTTTCTTGGTCAG
AGATATTCAATATTTTTGTTTATGATTTTTATATCAATCCATCTAAACAT
GAAATTGATAATGTAGCTGTCAATATTTTCCTTTTTATTATTTGGAAATA
TTGAACGTCGAACTTAAAAAGTTCAAGATTTAAGAAGGCCCAAATCAAAT
CCTCTGTTTTTTAGAGTGGAAATAATTGATTAATCAATGACGTCACACGT
TAAGCCTTTATTATGAAATGTTCACTCTCCCCCCTTATATTACTTCACAC
TTAAGTTCGACGTAAAAAGTCACACTTAATGACGTTAAGTAAGATGGTGT
ATAAAAAGTGTGCAACGCGTAACTGATATGCTGTCTTCACTGTGGGAAAT
CCACATATGAGAAAAAAGTATCTCGGGTTTGATAAGTTAGATGAACAGTG
TGAACCCAGAAAGAAAGAGCTTAGGCAACAGGGCTATTGGCTACACATTT
TTTTGTGAGAACGTTTGAAATTTTTGAGCCCTTTTTGAAGCCTTCGAATG
TTCTTAACTTTTTGAGTTTTAAGCCTAAAAATGTTCTTAGCATGTTCTTA
TTTTAACCATTTTGTGAGTATGTTTTGCCATTTTCCTAAGAAAAAGGGTG
TTTTCAAGTCTGCAAAGCCTTAAAATGTTCTTAACTTGTTCTTAACAGTT
TGACCATCGAAGCCTTATGTTATTATATAGTTTGTTCTTATGAAAAAACG
TGTATTTCTCAGTCTCTATAGGTCAACACGTTATACATCCATCGATCATT
TTAAGCCTGGAAGTTATTAAGAGTTATTTGTATTTTGCACATGAACCCGA
TATTTTGTTTTTAAGACATTCTTAATTCAGTTTAAAAGATTAACCTTCAA
GTCCAAGTTTTCATTTAAAGGTCATGAATTAAGAAACAGTCCTTAAGTTA
GTTGAGGGGTGTTCCCTTTTTCTCATTTGAGAGCATCTTCATAATATATC
AATTTCAGCATGGATGAAATTTTAAACACAGCAGGCCCTCCTTGAAATGA
GTTTTCGAAATAATCAGGGGAGACTAAAAGCAAATATGCAAAGAGATACC
GTTCGGACGGAATAACTCGACCCCCGGAATCAATTAAAAATTTGCGTGTT
TATGAAATATAAAGCCTTGAGCTATCATATTAAATTTCTTTTTGGTTTTA
TTATTTTTCAGGGTAAAACTTGAATCATTATATCATTGGCCACTCAAAGG
TGAACATAATGACTGGTGCTGAATTTTTAGAACGTTCAAATGGTTTATTT
GGTGGACCTAAGAAGTTATTTGAAGGTGAGCGGCGCTTATCCAATCTAGC
GCAACAGACGCAATTCCCATCATGGAACACGCTGAAAAAGCTGAAGCCAT
CAAACGAAGAAAGAAAGAACAGTTATAAGAACAGGAACACCAAGGATGAA
AGTGAAGGGAAAGATTTGATCCAAAAGAAGCAAAATTCAGATCATTTAAA
TGAAGAACAAATCAAACAAAATCCTAAGGTTGATCCTACAGAGGATTTAC
TGAAGGATTTATCAAGGATTCATTTTGATCGAAACAGACGATCGAGTGAT
TCATCAGTTATAAACCGCAAAATGGAGGAAAAGAAAAAGAAGTTAAGCCC
AAGCCATTACAAAGGAAAAAGGCGTGGGACGTACGCAGCCGTTTATGATC
CACGCGTTACGTTAACGCGACCACGCTCAGATACACGATCCCGATCTTTG
TTCATAAAATCGGATGAAATGGGTTCCCCATCACAGTCCGATTTACGAAT
CCGATTATTAAAATCTTTCCATAACAACAAAAGTTTGAGTTTGAGTGATG
CATCTTTATCTTCCGATGAAGAAGGGGCGGTCATTAAAAACAATAACAAT
CAACTCCCGAGGGCGTCAACAGTGGGCGCTACACCCTGTCAAAAGAAACA
CCGTCATCAATATAGCTCTAGTGGACAACGAGCACAATCGACTATAAGTC
ACCTACCAAAAGAACATTTAGAATATCTTGAAAGAAAATATGAAGAATCA
AAGTTGAAACAGAACCTGAACGAGAGCCAAGAATTTTCTGATACTTTACA
CAAAGCATGTAGAGAGGGAAATTATGAAAAAATTCAAGAACTTATAAATG
ATGGGCAAGATGTAAACGAATCAGACATTTTTGGACATGCGCCATGTTAT
TACGCCATTTTAAATGGGCATTTCGAATGTGTTTCTTTATTAGTTTCAAA
CGGCGCTAATTTGGACGATTATTTTCAGAAACAAAAACAACAGTATTTCA
GTCACTGTTGAATAATTTTAATATGGTTGGAAAGAGAAGTTGGTCCCACA
TTGTGAATTGTTTCTATTATTTTCCAGATTCAAGATCTATGTTTAAAAAC
CTGTACAGTTTAATTCAAATTCTCCTTATCGTAATTTTTGTATATTTCTA
GATGATCAATCTTATTGTCTGTTGTTCTGCATAATTTTTAGTTATACATA
TTGTAGATAGTAAATAAAGGTTTAAGAAGACATCTAATAGTTCAG

Coding sequence (CDS) from alignment at scaffold_86:889619..896013-

>TCONS_00073044 ID=TCONS_00073044|Name=TCONS_00073044|organism=Clytia hemisphaerica|type=CDS|length=1053bp|location=Sequence derived from alignment at scaffold_86:889619..896013- (Clytia hemisphaerica)
ATGACTGGTGCTGAATTTTTAGAACGTTCAAATGGTTTATTTGGTGGACC
TAAGAAGTTATTTGAAGGTGAGCGGCGCTTATCCAATCTAGCGCAACAGA
CGCAATTCCCATCATGGAACACGCTGAAAAAGCTGAAGCCATCAAACGAA
GAAAGAAAGAACAGTTATAAGAACAGGAACACCAAGGATGAAAGTGAAGG
GAAAGATTTGATCCAAAAGAAGCAAAATTCAGATCATTTAAATGAAGAAC
AAATCAAACAAAATCCTAAGGTTGATCCTACAGAGGATTTACTGAAGGAT
TTATCAAGGATTCATTTTGATCGAAACAGACGATCGAGTGATTCATCAGT
TATAAACCGCAAAATGGAGGAAAAGAAAAAGAAGTTAAGCCCAAGCCATT
ACAAAGGAAAAAGGCGTGGGACGTACGCAGCCGTTTATGATCCACGCGTT
ACGTTAACGCGACCACGCTCAGATACACGATCCCGATCTTTGTTCATAAA
ATCGGATGAAATGGGTTCCCCATCACAGTCCGATTTACGAATCCGATTAT
TAAAATCTTTCCATAACAACAAAAGTTTGAGTTTGAGTGATGCATCTTTA
TCTTCCGATGAAGAAGGGGCGGTCATTAAAAACAATAACAATCAACTCCC
GAGGGCGTCAACAGTGGGCGCTACACCCTGTCAAAAGAAACACCGTCATC
AATATAGCTCTAGTGGACAACGAGCACAATCGACTATAAGTCACCTACCA
AAAGAACATTTAGAATATCTTGAAAGAAAATATGAAGAATCAAAGTTGAA
ACAGAACCTGAACGAGAGCCAAGAATTTTCTGATACTTTACACAAAGCAT
GTAGAGAGGGAAATTATGAAAAAATTCAAGAACTTATAAATGATGGGCAA
GATGTAAACGAATCAGACATTTTTGGACATGCGCCATGTTATTACGCCAT
TTTAAATGGGCATTTCGAATGTGTTTCTTTATTAGTTTCAAACGGCGCTA
ATTTGGACGATTATTTTCAGAAACAAAAACAACAGTATTTCAGTCACTGT
TGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045290XLOC_045290Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073044-proteinTCONS_00073044-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073044-exon-scaffold_86-1575043694:895908..896013TCONS_00073044-exon-scaffold_86-1575043694:895908..896013Clytia hemisphaericaexon
TCONS_00073044-exon-scaffold_86-1575043694:889619..890952TCONS_00073044-exon-scaffold_86-1575043694:889619..890952Clytia hemisphaericaexon
TCONS_00073044-exon-scaffold_86-1510915933:895908..896013TCONS_00073044-exon-scaffold_86-1510915933:895908..896013Clytia hemisphaericaexon
TCONS_00073044-exon-scaffold_86-1510915933:889619..890952TCONS_00073044-exon-scaffold_86-1510915933:889619..890952Clytia hemisphaericaexon
TCONS_00073044-exon-scaffold_86-1491911889:895908..896013TCONS_00073044-exon-scaffold_86-1491911889:895908..896013Clytia hemisphaericaexon
TCONS_00073044-exon-scaffold_86-1491911889:889619..890952TCONS_00073044-exon-scaffold_86-1491911889:889619..890952Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_86supercontigscaffold_86:889619..896013 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0281043	0	0.0319251	0.155463	0.399259	0.926325	0.72846	0.485726	2.44421	1.34314	2.52793	14.3423	9.24875	12.7456	9.8565	5.04987	13.9524	4.66604	5.63848	0.72731	1.01443	15.4319	11.2058	9.9652	10.7921	1.26459	1.8557	31.9107	42.6595
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002110Ankyrin_rpt
IPR020683Ankyrin_rpt-contain_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073044 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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