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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072999 ID=TCONS_00072999|Name=TCONS_00072999|organism=Clytia hemisphaerica|type=transcript|length=1469bp
TGTAAACAATAGAAGGTTTCGTTTCTACGTGTTTTGCAAAAATACATAAA
TATTCGACACGGAAGAGAAAGTATCTATCTCTCTTGATTCCATCGATTCG
GCTGTCTTCAAGGTCTTCAAGtAACCTGAAAGACATCGAATAAGAACAAT
CGCAATCATGGTTCAGAAAGGTTCAAAAGTTGGTGTGATCAGTGCCTTAA
CATTCGTTGTATTTACTGTCCACGTTGTGTTTGCTGGACTTGCAGGCTCT
GGTGCATCACCGAAACTTTTTCCTGAAACTGTTGGTAAAGTATCTGATGA
ATTGAAGCTGTTCGTTACGCCGGTAGGAGCTACATTCTCCATATGGGGAG
TGATCTATTTCTTACAATTCGCTTGGATCATTTACACTTTGACTGCAATT
TGTAGACAAGGAGCCAGCACCAGTATCTTATCAACCAGATTCTATGTCTT
CTTTATGATAAGCACTGCCTTCATTACTGGTTGGTTGTTCTCGTGGACCA
GAAAAGAGGTTCTACCTTCCTTTATTGTGGTCATATTCCATCAGATTTTC
ATCGAGCTGGCATTCACAATTTCGTGTTATGATCTGCACGATTATTTAAA
TACACATGAAATTGACAATAATAATAAGATAGATGTCTGGTGTCAGCGCA
TATTGGTTCAAAATGGTATCTTATTCTATTTGACTTGGACCATTGTTGCA
TCGCtgttaaatttcgcgatttttcttAACCAAGAGTTGAGCACCAGTGA
TGAAACATCATCCCTGATTGCATTGATTATCCTTGGTGTCACAGCTATCG
CTTGGTTTGTCTTGGAAAATTTCGCATTCAAAGCATATACCGAATATACT
TTCTCCGCTTACATCACATTGATTTGGGCCCTCTCTGGAGTCATTGCAAA
TGTTTGGGATAATAATCGAGTTGTATCTGGTTTGACTTTGGGTCTCTTGG
TTACTGCTTGCATCCTATTGGTCCTCAGAATTCTCCTTATTGTCTTACGA
GTAAGAAAACGTGCAAGCTATTCAAATATCTCTTATAACGCAGAATCAGA
GAAAGTGTCAGGACATTGATGGAGCAAcattattcatagaattattcACA
AATAGGATTTACACACAGGCTTTTGGACACATGGGTGTTTAAAATCCAAG
CTGGATGAATTATCTAACTCTAACTGTTGTTTGGATTTCTTACACAGGAC
CTTAAAACTTAGTCTAAATTGAATTTAATCCGAAACAAATGTCAAATGAT
CTCTTCAAGACACCTTTCATCAAGCAACTGGTAAAAACTGCTGAATAAAC
ACTTTCATCAAACCTATATatataatttaatttcaatgTTTGTTTTCTTG
GATTTTTGAATGTcacatgttttttattttacgaatttgataaatttatg
aggatttgtttaagatatttgttttaatttcttgaaagaaaaaaacgggg
aaaaaactcgaaaaaaagg Run BLAST on NCBI protein sequence of TCONS_00072999-protein >TCONS_00072999-protein ID=TCONS_00072999-protein|Name=TCONS_00072999-protein|organism=Clytia hemisphaerica|type=polypeptide|length=303bp
MVQKGSKVGVISALTFVVFTVHVVFAGLAGSGASPKLFPETVGKVSDELK
LFVTPVGATFSIWGVIYFLQFAWIIYTLTAICRQGASTSILSTRFYVFFM
ISTAFITGWLFSWTRKEVLPSFIVVIFHQIFIELAFTISCYDLHDYLNTH
EIDNNNKIDVWCQRILVQNGILFYLTWTIVASLLNFAIFLNQELSTSDET
SSLIALIILGVTAIAWFVLENFAFKAYTEYTFSAYITLIWALSGVIANVW
DNNRVVSGLTLGLLVTACILLVLRILLIVLRVRKRASYSNISYNAESEKV
SGH Run BLAST on NCBI transcript from alignment at scaffold_86:514877..516796- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072999 ID=TCONS_00072999|Name=TCONS_00072999|organism=Clytia hemisphaerica|type=transcript|length=1920bp|location=Sequence derived from alignment at scaffold_86:514877..516796- (Clytia hemisphaerica)
TGTAAACAATAGAAGGTTTCGTTTCTACGTGTTTTGCAAAAATACATAAA
TATTCGACACGGAAGAGAAAGTATCTATCTCTCTTGATTCCATCGATTCG
GCTGTCTTCAAGGTCTTCAAGGTAAGTTTTCATTCTTCAAAGTCATAGTA
TGTTCAAAGTTTATGTGGACACTTTACAATATGTCAGCACTTATTTATGC
TGAAGTAAAAAGTTATACATAATTGGAAAGATATTTTAGAGGAGAGTATC
CTAAAAGACTGTTTTCTCTAATTTCAAATCTGCTCTCTGGTTTTCGGTAT
CTTTCTTAGATAGAAACCCAGCTGGCACACAACGTTGTTTCAACGTTTAT
TTAACATTCACAACGTCCATATAATGTTAGATGAACGTTGAAACAACGTT
GTGTGCCAGCTGGGAAGTCATGGCCCTGCGAAGAAAGTCTTCTTACACTA
TTTAAGTCAGTTTTGGTGTTTTTAGCATATGAGAACAGACGAGACTCAAA
TACAATTTACTGGTCCTTATAAAAAATAGTGTATTATATGTTTTGACACC
AATTTGTTATTTTTGTTTATAGTAACCTGAAAGACATCGAATAAGAACAA
TCGCAATCATGGTTCAGAAAGGTTCAAAAGTTGGTGTGATCAGTGCCTTA
ACATTCGTTGTATTTACTGTCCACGTTGTGTTTGCTGGACTTGCAGGCTC
TGGTGCATCACCGAAACTTTTTCCTGAAACTGTTGGTAAAGTATCTGATG
AATTGAAGCTGTTCGTTACGCCGGTAGGAGCTACATTCTCCATATGGGGA
GTGATCTATTTCTTACAATTCGCTTGGATCATTTACACTTTGACTGCAAT
TTGTAGACAAGGAGCCAGCACCAGTATCTTATCAACCAGATTCTATGTCT
TCTTTATGATAAGCACTGCCTTCATTACTGGTTGGTTGTTCTCGTGGACC
AGAAAAGAGGTTCTACCTTCCTTTATTGTGGTCATATTCCATCAGATTTT
CATCGAGCTGGCATTCACAATTTCGTGTTATGATCTGCACGATTATTTAA
ATACACATGAAATTGACAATAATAATAAGATAGATGTCTGGTGTCAGCGC
ATATTGGTTCAAAATGGTATCTTATTCTATTTGACTTGGACCATTGTTGC
ATCGCTGTTAAATTTCGCGATTTTTCTTAACCAAGAGTTGAGCACCAGTG
ATGAAACATCATCCCTGATTGCATTGATTATCCTTGGTGTCACAGCTATC
GCTTGGTTTGTCTTGGAAAATTTCGCATTCAAAGCATATACCGAATATAC
TTTCTCCGCTTACATCACATTGATTTGGGCCCTCTCTGGAGTCATTGCAA
ATGTTTGGGATAATAATCGAGTTGTATCTGGTTTGACTTTGGGTCTCTTG
GTTACTGCTTGCATCCTATTGGTCCTCAGAATTCTCCTTATTGTCTTACG
AGTAAGAAAACGTGCAAGCTATTCAAATATCTCTTATAACGCAGAATCAG
AGAAAGTGTCAGGACATTGATGGAGCAACATTATTCATAGAATTATTCAC
AAATAGGATTTACACACAGGCTTTTGGACACATGGGTGTTTAAAATCCAA
GCTGGATGAATTATCTAACTCTAACTGTTGTTTGGATTTCTTACACAGGA
CCTTAAAACTTAGTCTAAATTGAATTTAATCCGAAACAAATGTCAAATGA
TCTCTTCAAGACACCTTTCATCAAGCAACTGGTAAAAACTGCTGAATAAA
CACTTTCATCAAACCTATATATATAATTTAATTTCAATGTTTGTTTTCTT
GGATTTTTGAATGTCACATGTTTTTTATTTTACGAATTTGATAAATTTAT
GAGGATTTGTTTAAGATATTTGTTTTAATTTCTTGAAAGAAAAAAACGGG
GAAAAAACTCGAAAAAAAGG Coding sequence (CDS) from alignment at scaffold_86:514877..516796- >TCONS_00072999 ID=TCONS_00072999|Name=TCONS_00072999|organism=Clytia hemisphaerica|type=CDS|length=912bp|location=Sequence derived from alignment at scaffold_86:514877..516796- (Clytia hemisphaerica)
ATGGTTCAGAAAGGTTCAAAAGTTGGTGTGATCAGTGCCTTAACATTCGT
TGTATTTACTGTCCACGTTGTGTTTGCTGGACTTGCAGGCTCTGGTGCAT
CACCGAAACTTTTTCCTGAAACTGTTGGTAAAGTATCTGATGAATTGAAG
CTGTTCGTTACGCCGGTAGGAGCTACATTCTCCATATGGGGAGTGATCTA
TTTCTTACAATTCGCTTGGATCATTTACACTTTGACTGCAATTTGTAGAC
AAGGAGCCAGCACCAGTATCTTATCAACCAGATTCTATGTCTTCTTTATG
ATAAGCACTGCCTTCATTACTGGTTGGTTGTTCTCGTGGACCAGAAAAGA
GGTTCTACCTTCCTTTATTGTGGTCATATTCCATCAGATTTTCATCGAGC
TGGCATTCACAATTTCGTGTTATGATCTGCACGATTATTTAAATACACAT
GAAATTGACAATAATAATAAGATAGATGTCTGGTGTCAGCGCATATTGGT
TCAAAATGGTATCTTATTCTATTTGACTTGGACCATTGTTGCATCGCTGT
TAAATTTCGCGATTTTTCTTAACCAAGAGTTGAGCACCAGTGATGAAACA
TCATCCCTGATTGCATTGATTATCCTTGGTGTCACAGCTATCGCTTGGTT
TGTCTTGGAAAATTTCGCATTCAAAGCATATACCGAATATACTTTCTCCG
CTTACATCACATTGATTTGGGCCCTCTCTGGAGTCATTGCAAATGTTTGG
GATAATAATCGAGTTGTATCTGGTTTGACTTTGGGTCTCTTGGTTACTGC
TTGCATCCTATTGGTCCTCAGAATTCTCCTTATTGTCTTACGAGTAAGAA
AACGTGCAAGCTATTCAAATATCTCTTATAACGCAGAATCAGAGAAAGTG
TCAGGACATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072999-exon-scaffold_86-1575043694:516676..516796 | TCONS_00072999-exon-scaffold_86-1575043694:516676..516796 | Clytia hemisphaerica | exon |
| TCONS_00072999-exon-scaffold_86-1575043694:514877..516224 | TCONS_00072999-exon-scaffold_86-1575043694:514877..516224 | Clytia hemisphaerica | exon |
| TCONS_00072999-exon-scaffold_86-1510915933:516676..516796 | TCONS_00072999-exon-scaffold_86-1510915933:516676..516796 | Clytia hemisphaerica | exon |
| TCONS_00072999-exon-scaffold_86-1510915933:514877..516224 | TCONS_00072999-exon-scaffold_86-1510915933:514877..516224 | Clytia hemisphaerica | exon |
| TCONS_00072999-exon-scaffold_86-1491911889:516676..516796 | TCONS_00072999-exon-scaffold_86-1491911889:516676..516796 | Clytia hemisphaerica | exon |
| TCONS_00072999-exon-scaffold_86-1491911889:514877..516224 | TCONS_00072999-exon-scaffold_86-1491911889:514877..516224 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_86 | supercontig | scaffold_86:514877..516796 - |
Blast
The following BLAST results are available for this feature:
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