TCONS_00072999 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072999
Unique NameTCONS_00072999
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1469

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072999 ID=TCONS_00072999|Name=TCONS_00072999|organism=Clytia hemisphaerica|type=transcript|length=1469bp
TGTAAACAATAGAAGGTTTCGTTTCTACGTGTTTTGCAAAAATACATAAA
TATTCGACACGGAAGAGAAAGTATCTATCTCTCTTGATTCCATCGATTCG
GCTGTCTTCAAGGTCTTCAAGtAACCTGAAAGACATCGAATAAGAACAAT
CGCAATCATGGTTCAGAAAGGTTCAAAAGTTGGTGTGATCAGTGCCTTAA
CATTCGTTGTATTTACTGTCCACGTTGTGTTTGCTGGACTTGCAGGCTCT
GGTGCATCACCGAAACTTTTTCCTGAAACTGTTGGTAAAGTATCTGATGA
ATTGAAGCTGTTCGTTACGCCGGTAGGAGCTACATTCTCCATATGGGGAG
TGATCTATTTCTTACAATTCGCTTGGATCATTTACACTTTGACTGCAATT
TGTAGACAAGGAGCCAGCACCAGTATCTTATCAACCAGATTCTATGTCTT
CTTTATGATAAGCACTGCCTTCATTACTGGTTGGTTGTTCTCGTGGACCA
GAAAAGAGGTTCTACCTTCCTTTATTGTGGTCATATTCCATCAGATTTTC
ATCGAGCTGGCATTCACAATTTCGTGTTATGATCTGCACGATTATTTAAA
TACACATGAAATTGACAATAATAATAAGATAGATGTCTGGTGTCAGCGCA
TATTGGTTCAAAATGGTATCTTATTCTATTTGACTTGGACCATTGTTGCA
TCGCtgttaaatttcgcgatttttcttAACCAAGAGTTGAGCACCAGTGA
TGAAACATCATCCCTGATTGCATTGATTATCCTTGGTGTCACAGCTATCG
CTTGGTTTGTCTTGGAAAATTTCGCATTCAAAGCATATACCGAATATACT
TTCTCCGCTTACATCACATTGATTTGGGCCCTCTCTGGAGTCATTGCAAA
TGTTTGGGATAATAATCGAGTTGTATCTGGTTTGACTTTGGGTCTCTTGG
TTACTGCTTGCATCCTATTGGTCCTCAGAATTCTCCTTATTGTCTTACGA
GTAAGAAAACGTGCAAGCTATTCAAATATCTCTTATAACGCAGAATCAGA
GAAAGTGTCAGGACATTGATGGAGCAAcattattcatagaattattcACA
AATAGGATTTACACACAGGCTTTTGGACACATGGGTGTTTAAAATCCAAG
CTGGATGAATTATCTAACTCTAACTGTTGTTTGGATTTCTTACACAGGAC
CTTAAAACTTAGTCTAAATTGAATTTAATCCGAAACAAATGTCAAATGAT
CTCTTCAAGACACCTTTCATCAAGCAACTGGTAAAAACTGCTGAATAAAC
ACTTTCATCAAACCTATATatataatttaatttcaatgTTTGTTTTCTTG
GATTTTTGAATGTcacatgttttttattttacgaatttgataaatttatg
aggatttgtttaagatatttgttttaatttcttgaaagaaaaaaacgggg
aaaaaactcgaaaaaaagg
Run BLAST on NCBI

protein sequence of TCONS_00072999-protein

>TCONS_00072999-protein ID=TCONS_00072999-protein|Name=TCONS_00072999-protein|organism=Clytia hemisphaerica|type=polypeptide|length=303bp
MVQKGSKVGVISALTFVVFTVHVVFAGLAGSGASPKLFPETVGKVSDELK
LFVTPVGATFSIWGVIYFLQFAWIIYTLTAICRQGASTSILSTRFYVFFM
ISTAFITGWLFSWTRKEVLPSFIVVIFHQIFIELAFTISCYDLHDYLNTH
EIDNNNKIDVWCQRILVQNGILFYLTWTIVASLLNFAIFLNQELSTSDET
SSLIALIILGVTAIAWFVLENFAFKAYTEYTFSAYITLIWALSGVIANVW
DNNRVVSGLTLGLLVTACILLVLRILLIVLRVRKRASYSNISYNAESEKV
SGH
Run BLAST on NCBI

transcript from alignment at scaffold_86:514877..516796-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072999 ID=TCONS_00072999|Name=TCONS_00072999|organism=Clytia hemisphaerica|type=transcript|length=1920bp|location=Sequence derived from alignment at scaffold_86:514877..516796- (Clytia hemisphaerica)
TGTAAACAATAGAAGGTTTCGTTTCTACGTGTTTTGCAAAAATACATAAA TATTCGACACGGAAGAGAAAGTATCTATCTCTCTTGATTCCATCGATTCG GCTGTCTTCAAGGTCTTCAAGGTAAGTTTTCATTCTTCAAAGTCATAGTA TGTTCAAAGTTTATGTGGACACTTTACAATATGTCAGCACTTATTTATGC TGAAGTAAAAAGTTATACATAATTGGAAAGATATTTTAGAGGAGAGTATC CTAAAAGACTGTTTTCTCTAATTTCAAATCTGCTCTCTGGTTTTCGGTAT CTTTCTTAGATAGAAACCCAGCTGGCACACAACGTTGTTTCAACGTTTAT TTAACATTCACAACGTCCATATAATGTTAGATGAACGTTGAAACAACGTT GTGTGCCAGCTGGGAAGTCATGGCCCTGCGAAGAAAGTCTTCTTACACTA TTTAAGTCAGTTTTGGTGTTTTTAGCATATGAGAACAGACGAGACTCAAA TACAATTTACTGGTCCTTATAAAAAATAGTGTATTATATGTTTTGACACC AATTTGTTATTTTTGTTTATAGTAACCTGAAAGACATCGAATAAGAACAA TCGCAATCATGGTTCAGAAAGGTTCAAAAGTTGGTGTGATCAGTGCCTTA ACATTCGTTGTATTTACTGTCCACGTTGTGTTTGCTGGACTTGCAGGCTC TGGTGCATCACCGAAACTTTTTCCTGAAACTGTTGGTAAAGTATCTGATG AATTGAAGCTGTTCGTTACGCCGGTAGGAGCTACATTCTCCATATGGGGA GTGATCTATTTCTTACAATTCGCTTGGATCATTTACACTTTGACTGCAAT TTGTAGACAAGGAGCCAGCACCAGTATCTTATCAACCAGATTCTATGTCT TCTTTATGATAAGCACTGCCTTCATTACTGGTTGGTTGTTCTCGTGGACC AGAAAAGAGGTTCTACCTTCCTTTATTGTGGTCATATTCCATCAGATTTT CATCGAGCTGGCATTCACAATTTCGTGTTATGATCTGCACGATTATTTAA ATACACATGAAATTGACAATAATAATAAGATAGATGTCTGGTGTCAGCGC ATATTGGTTCAAAATGGTATCTTATTCTATTTGACTTGGACCATTGTTGC ATCGCTGTTAAATTTCGCGATTTTTCTTAACCAAGAGTTGAGCACCAGTG ATGAAACATCATCCCTGATTGCATTGATTATCCTTGGTGTCACAGCTATC GCTTGGTTTGTCTTGGAAAATTTCGCATTCAAAGCATATACCGAATATAC TTTCTCCGCTTACATCACATTGATTTGGGCCCTCTCTGGAGTCATTGCAA ATGTTTGGGATAATAATCGAGTTGTATCTGGTTTGACTTTGGGTCTCTTG GTTACTGCTTGCATCCTATTGGTCCTCAGAATTCTCCTTATTGTCTTACG AGTAAGAAAACGTGCAAGCTATTCAAATATCTCTTATAACGCAGAATCAG AGAAAGTGTCAGGACATTGATGGAGCAACATTATTCATAGAATTATTCAC AAATAGGATTTACACACAGGCTTTTGGACACATGGGTGTTTAAAATCCAA GCTGGATGAATTATCTAACTCTAACTGTTGTTTGGATTTCTTACACAGGA CCTTAAAACTTAGTCTAAATTGAATTTAATCCGAAACAAATGTCAAATGA TCTCTTCAAGACACCTTTCATCAAGCAACTGGTAAAAACTGCTGAATAAA CACTTTCATCAAACCTATATATATAATTTAATTTCAATGTTTGTTTTCTT GGATTTTTGAATGTCACATGTTTTTTATTTTACGAATTTGATAAATTTAT GAGGATTTGTTTAAGATATTTGTTTTAATTTCTTGAAAGAAAAAAACGGG GAAAAAACTCGAAAAAAAGG

Coding sequence (CDS) from alignment at scaffold_86:514877..516796-

>TCONS_00072999 ID=TCONS_00072999|Name=TCONS_00072999|organism=Clytia hemisphaerica|type=CDS|length=912bp|location=Sequence derived from alignment at scaffold_86:514877..516796- (Clytia hemisphaerica)
ATGGTTCAGAAAGGTTCAAAAGTTGGTGTGATCAGTGCCTTAACATTCGT
TGTATTTACTGTCCACGTTGTGTTTGCTGGACTTGCAGGCTCTGGTGCAT
CACCGAAACTTTTTCCTGAAACTGTTGGTAAAGTATCTGATGAATTGAAG
CTGTTCGTTACGCCGGTAGGAGCTACATTCTCCATATGGGGAGTGATCTA
TTTCTTACAATTCGCTTGGATCATTTACACTTTGACTGCAATTTGTAGAC
AAGGAGCCAGCACCAGTATCTTATCAACCAGATTCTATGTCTTCTTTATG
ATAAGCACTGCCTTCATTACTGGTTGGTTGTTCTCGTGGACCAGAAAAGA
GGTTCTACCTTCCTTTATTGTGGTCATATTCCATCAGATTTTCATCGAGC
TGGCATTCACAATTTCGTGTTATGATCTGCACGATTATTTAAATACACAT
GAAATTGACAATAATAATAAGATAGATGTCTGGTGTCAGCGCATATTGGT
TCAAAATGGTATCTTATTCTATTTGACTTGGACCATTGTTGCATCGCTGT
TAAATTTCGCGATTTTTCTTAACCAAGAGTTGAGCACCAGTGATGAAACA
TCATCCCTGATTGCATTGATTATCCTTGGTGTCACAGCTATCGCTTGGTT
TGTCTTGGAAAATTTCGCATTCAAAGCATATACCGAATATACTTTCTCCG
CTTACATCACATTGATTTGGGCCCTCTCTGGAGTCATTGCAAATGTTTGG
GATAATAATCGAGTTGTATCTGGTTTGACTTTGGGTCTCTTGGTTACTGC
TTGCATCCTATTGGTCCTCAGAATTCTCCTTATTGTCTTACGAGTAAGAA
AACGTGCAAGCTATTCAAATATCTCTTATAACGCAGAATCAGAGAAAGTG
TCAGGACATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045278XLOC_045278Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072999-proteinTCONS_00072999-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072999-exon-scaffold_86-1575043694:516676..516796TCONS_00072999-exon-scaffold_86-1575043694:516676..516796Clytia hemisphaericaexon
TCONS_00072999-exon-scaffold_86-1575043694:514877..516224TCONS_00072999-exon-scaffold_86-1575043694:514877..516224Clytia hemisphaericaexon
TCONS_00072999-exon-scaffold_86-1510915933:516676..516796TCONS_00072999-exon-scaffold_86-1510915933:516676..516796Clytia hemisphaericaexon
TCONS_00072999-exon-scaffold_86-1510915933:514877..516224TCONS_00072999-exon-scaffold_86-1510915933:514877..516224Clytia hemisphaericaexon
TCONS_00072999-exon-scaffold_86-1491911889:516676..516796TCONS_00072999-exon-scaffold_86-1491911889:516676..516796Clytia hemisphaericaexon
TCONS_00072999-exon-scaffold_86-1491911889:514877..516224TCONS_00072999-exon-scaffold_86-1491911889:514877..516224Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_86supercontigscaffold_86:514877..516796 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.36604 0.302032 0.191284 0.155952 0.0759424 0.0300054 0.868805 0.915035 1.16264 1.70463 3.39468 1.44393 26.7599 32.1661 70.8128 154.525 8.24355 8.81768 39.0605 23.9293 4.38302 3.74462 6.48912 2.49484 2.87193 2.15843 0 0 2.59392 1.08259
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072999 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top