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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072989 ID=TCONS_00072989|Name=TCONS_00072989|organism=Clytia hemisphaerica|type=transcript|length=843bp
CAAAAATAATATCATAGGGAATTAAACGTatgatgaaaaagattttttca
ccATATAATTCCTCGTCAGTCATCTGGAAGAATGAATTTgcttaaaattc
caaaatgatcACTTGGGAACATCCCACAAGACAATCTCTCCAAACCGATC
AATTCAAATCCAATACATTGCATTGGATTCGATTGTGCTCTTTTGAAATA
CATTCGATCGAAGCGCGCACGTGGTTTACGATTACCGCCGAATTTTTTAT
TATCATTCAGTTCCAGATCCCAAGTAAACTTTGCATTTGGATCTTCTCCA
GCCGTTTCCCAGGCGTCTGTAATTTTGGGCGGAATCCCGCcaactttctt
taaatcttCCGCCCTCATATTCAAATCACCagcaaaaataaagtttgtaT
CGCAAGGTGAATCCGTCATCATTtgaaaacattgtttcaacTGTTTTTGT
CTCTCTGCTGCGCTTTCTTTTAAACTTTCCAAGTGTGACGTCATCACCGT
AATATTTTTCCCGTAAATGTGAATGTTCTGAGAGAGATAGTGGCGTTGCA
TTTGAGAGGAAGGGAAAAACTTACCGTCCAGCTCACCAATTATTTCTACA
TGTGATTTCTTTAGGAACAGGATAACATTGAAATAACCATTCTGCATCAA
AGAGCGAACCTCGTAAACACTAGAAATAATATATCATCGGTAGACTGAGA
AATAATTTTGAAGGTCTGTACAGCGGCTAGATCTATAATAAAACTTTGCT
AGTGTAAAGCTATTTaaatcatattttgatttatacTCGTTGACGAGTTA
AACACCAATTATATATAAAGGATCTGACGTAGCACCTTtattc Run BLAST on NCBI transcript from alignment at scaffold_86:292185..298308- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072989 ID=TCONS_00072989|Name=TCONS_00072989|organism=Clytia hemisphaerica|type=transcript|length=6124bp|location=Sequence derived from alignment at scaffold_86:292185..298308- (Clytia hemisphaerica)
CAAAAATAATATCATAGGGAATTAAACGTATGATGAAAAAGATTTTTTCA
CCATATAATTCCTCGTCAGTCATCTGGAAGAATGAATTTGCTTAAAATTC
CAAAATGATCACTTGGGAACATCCCACAAGACAATCTCTCCAAACCGATC
AATTCAAATCCAATACATTGCATTGGATTCGATTGTGCTCTTTTGAAATA
CATTCGATCGAAGCGCGCACGTGGTTTACGATTACCGCCGAATTTTTTAT
TATCATTCAGTTCCAGATCCCAAGTAAACTTTGCATTTGGATCTTCTCCA
GCCGTTTCCCAGGCGTCTGTAATTTTGGGCGGGATCCCACCAACCTGTCT
CAAATCTTCCGCCCTCATATTCAAGTCACCAGCAAAAATGAAGTTTGTGT
CGCTCGGCGAGTCTGTTATTGTTTCAAAACATTGTTTCAATTGTTTTTGT
CTCTCTGCAGCACATTCTTTTAAACTTTCCAAGTGTGACGTCATCACTGT
AACAGGTTTTCCATGAATGTATAGTTTTTGTAACAAACAGTGACGATCCA
TTTGGGAAGAGTAGAAATGCCAACCGTCCAACTCACCAATGACTTTCACG
TGCGGTTTCTTTAGGAACATGATTACATTGAAATAACCATCGTGCTCCAA
TGTTCGAATCACGTAAAGACTAAAATGAACCGTCCGTAAACTTGGAGGTG
TATAAAGGCGTTTTATATTCCTTTTTCTTACTTATCCCATTATTTTAAGG
TGATTTTGAAACCTATTGTTTTCAATTTTCCCAGTATCAAAATGTTGAAA
AGGCAACTGACAGAACTTGTGAATCAAAATTTTAGTTCACTTATATTCAC
TCAGTTGATGATTGTGCTTTTATGTAGTGAACCCACTGACCTTTATATAT
CCCTGGCCCAAGATATATCCGCCATCTTTGATCTAAGGTTTTTTTTTTGA
ATTGGTGCCCGTAAAGAAGCCATTGCAGTGTTCCAATAACCTCTGCAAAT
GAATCCAACATTTGATCCCACATTATTGTTGGATCAAATGTTGGGTTCGT
TTGCGCAAGTCTTAAAATTGCAACTTTTTAAGAAAATTGTTGGAAATCAT
GTTGGATGAAGATTGATCGCCGTCAAACTTTTCATCCAACATTTTTTAAT
GAGATTGACGTCACTTTTATGTTGGTTTCAATGTTGTATGAATTTGCGTA
ATCGTGTTGGATGAAAATGTTTGACATTTTTGCGCAAATGACTTTTCATG
CAACTTTTCAAATTTTTCCACGTGACTTTTCGTCCAACATTTCGTCCAAC
AATGAATTGGAAATGTTGGATTCATTTGCGCCGGCCTTAACGCCGCTACA
TCATCAAAAGTTTTCGAGGGAAAGTAGATCTAGCGCTCTCGATGCATTAC
ACATTGATCAGTGCCGCCATTAGGGTACCACTTTTCAAAAAACTCTGATC
AAAGATTTTGCTTGGCCGGAATTGAGAAACTTGGTCCAGGGTATAAAAAG
GTCAGCGAGTAAACACCCTAATAAATAAGATTTTCGATGGCAGCTCCTTC
ATACAAAATGGGGACTAGGGGTTCGAAAACAATTGGGTTTTGCTATTGCC
AGTCATATCAGACAAATACGAACTTCCTTACAGTAACTTACAACTATAAG
ATTCACGTCCCTTCTAGAGAAAAGACGTTTATTCAATAAAAAAGTTTTTT
TTTTTAATAATAATAAAATTTATTGGAAATCTTTTCCCGTCGGGGATACT
GAAAAGAAGCAAGTAGTTATTCCAAGTGATAAGGAATACACGACATTTTT
CAAAATCAGAAATTAGGACTTACGGGAAGAGAATAAAAAGAGAGAGGAAT
GTTTGTTGAACAACTTCTTGAAGCATCACAATGGTCGGTAATTTTTTCAA
GATGTCTTTCAGAGCTCCTTGGAATCTCTCCATCAAATATTCGTCTTCCA
AACCATCAATGTTCCAAGACAGCACTGTGAACTCTTTGGAACCTTCTTGA
GGTGGAGCTCTATAGCACAAGAAAAAGATTTTTGATATTGAACGTATATT
GCAAAAACATAGTTCCNGTTTTTGCGCAAATGACTTTTCATGCAACTTTT
CAAATTTTTCCACGTGACTTTTCGTCCAACATTTCGTCCAACAATGAATT
GGAAATGTTGGATTGAATGTTGGATTCATTTGCGCCGGCCTTAACGCCGC
TACATCATCAAAAGTTTTCGAGGGAAAGTAGATCTAGCGCTCTCGATGCA
TTACACATTGATCAGTGCCGCCATTAGGGTACCACTTTTCAAAAAACTCT
GATCAAAGATTTTGCTTGGCCGGGATTGAGAAACTTGGTCCAGGGTATAA
AAAGGTCAGCGAGTAAACACCCTAATAAATAAGATTTTCGATGGCAGCTC
CTTCATACAAAATGGGGACTAGGGGTTCGAAAACAATTGGGTTTTGCTAT
TGCCAGTCATATCAGACAAATACGAACTTCCTTACAGTAACTTACAACTA
TAAGATTCACGTCCCTTCTAGAGAAAAGACGTTTATTCAATAAAATAAAA
TTTATTGGAAATCTTTTCCCGTCGGCTTTTCTCTAAAGAGGGGTACTGAA
AAGAAGCAAATAGTTATTCCAAGTGATAAGGAATACACGACATTTTCAAA
ATCAGAAATTAGGACTTACGGGAAGAGAATAAAAAGAGAGAGGAATGTTT
GTTGAACAACTTCTTGAAGCATCACAATGGTCGGTAATTTTTTCAAGATG
TCTTTCAGAGCTCCTTGGAATCTTTCCATCAAATATTCTTCTTCCAAACC
ATCAATGTTCCATGACAGCACTGTGAACTCTTTTGAACCTTCTTGAGGTG
GAGCTCTATAGCACAAGAAAAAGATTTTTGATATTGAACGTATATTGCAA
AAACATAGTTCTAGGGGAAAATCTTTTGCGTAAAAAAGCTTTTGCCGAAA
TTTTTGAATTTCGCGAGTATTCACTTTTGCGAATGGAGCAAAAAAAAAGA
CTTGATTTGTTGAATTTAATTCATTTATAACCCCCCCCCCCATTTTCACT
AATTTTTGTGAAACACAGGACAAAAGTCTTTGTAAAAAGGGTACTGCATT
CTGCTTTAACAAAATATGATGCTTACACTGACGGAGAAGCTTTAGATGAA
ACATCTTCCTGAGCCTGAATAATAAAATCATTAACGAATTAAAATGATAC
AGTTATATAACAGATGTGGGGTACTTTTATATGCACGAACCTCCACAGAT
TCCTTTTCAATCAGCGAACGCAAACCTAAACTAACGGTCACAGACCTGAT
TTAGCGTTCGTATCTAGGCCGAAGACTTGCAGAAAATAAATTGAGTAGAA
ATTTGTTTTATATCCTTTATATGAATTCAAGCAAGATTTTTATATGATGT
TTCAATGGAAATGTTTTGAAAAAAAAAACAAGTTAAAAGATTTTAAACTA
AAAAGAATGAAATTAATGCGAATACCTCATATTGAACTACTCATCTCCCG
TCTACAAGACCACTGTGGTAACCACTGGGCCATCGCAACTGATGCTATTC
CGAGAGGTGCAATATATTCATACTACCCTAACTTCAGATTAGGCCGGTAA
CTTTCTAATCAGGTCTTCGGCCGCTAAATCAGGTCTGCATCTACTGACGG
AAAAAATTTGCGGTACTCCAATCAATTTTTTATTTATATGGTACAACAGG
GCTCTCTTAGTGTTATTGTATCGACAACTAGATAGAATACCACGTTGATT
GACCAAGATCAATTAAAGCAATATAGCATATCAATTGTTTATCTTTAAGT
AAAATTTGAATTGTCCTTAGAGCTTACTGAGATTCCGTAAAACGCTAAAT
CATCATCGTCATCATTCAGTAAATGAGTGAGGTCATCTTTCCCACTATCA
TTTGTTTGGGCTTTCTTCGGTACCGGTTGGTTGGCGATGATGTCGTCATC
TTTGTCATTCAATAAATAAGTGAGGTCATCTCCACCAATGTCATTTGTTT
TTGCTTTCTTCGGTACCGGTTGGTTGACGATGATGTCATTATCTTTGTCA
TTCAATAGATGAGTAAGATCGTCTCCATCGCAATTCTCTGTTTCGGTTTT
CTTCGGTACCAGCAGATTAGCGACGGCGCCATCTTCTTTATCATTGTCGT
CATCACTCAGTACAACGACTTCCCTAACAAAATTGAACGACAAGAGAAAA
AAAATAGTGTATTTCAAAAAAACCAAACTTGGATAAAACATGTGTAAAAG
CCAAGAATCTTATTACTTGATACTCTACTGAGCTGAACAACTAATCTGGT
TAAATTGATTTACAAAACATTGGTTCGCGAAGAGAAATTTGTCAACAAGG
TACTAAAAAACCTTTGCTTTCGCTTTGCAGTAGACGAGGTTGGGACTTCC
ATATCACCCTATCTTCTCAATCATTGTGAACTTTACATTCGATGATATGA
AGCAAGAGCTTTGTTGTAAAATGAAAGATTCGAGACGTTTTCCTGTAAAA
TAATGGTCAGTGAAGATCAAACAAAATCAACATTTGTGAACTACGTCGAC
TAATCCCATTTGAGTAATCCTAACAAAATCAAATCATCAGCATCGTCATG
CAAAATATCATAAAAAGCTAATGAGCCAATCACAAGAAAAACTGATAATA
GAAGAATGACCAACTGGCTCATTTATAGGGTTACTTATGTTGTAAAATGG
ACTTTAACAAAAAGAAAAATTTTAAATCGGTGAAAAGGGTGTTTTCTCGG
TTGGTATTGTCCAATTGCTTAAAATTTCTTCCTAGTTGAGCTTACTAAAA
ACATTATGGGTAAGTTTTTATCAAAGTTTTAGTTTCCCTTTACGTCTTAC
CTGCGTTGATCTCTTTCTTCGTTTATTTATTATTTTTTTCATTTACTCTC
TAAAATATAAAAACAACAATTTTTAAGTCACTTTTTTAAATCAGTCATCG
AAAATATCAACTTTCGATGATTGTTAGAGTCCCTTGTTATAGAAAGATAA
AGTGAACTTGAGAAGAAGAAAAAAAGAAACTTTAAGCGTGAACGTGGAAA
ACATTTTCAACCTCTTGTGGGGATTACACCAACTTTTTTCCTAATCTAGT
TTTGAAAGTTTACTAATTCAGTCTATAGTATAGAGAAATTCTGAATATAA
TGTACTTTCAACTACTGTATCAGTACTTCACTCCGATCATGGTACCTGGA
ATAAAAACTTTTCTTATTGGGGATAAAATAAACGTGATCAAGAGGTGAAT
ATGGTTCTTTAAAAATAAAAGATTGATAAAAAACATACATACATAATCTC
TAAAACGCAAAATACAATGTAAAAATAAATTCAAAAAACTCTACTATATT
TAGTCATCTGGAAGAATAAATTTGCCTAAAATTCCAAAATGGTCACTCGG
AAACATCCCACACGACAGTCTTTCAAATCCAACCAGTTCAAAACCAATAC
ATTGAACCGGAGTCGATTGTGATCTCTTGAAAAACATCCGGTCAAAACGT
GCACGTGGTTTACAGTTCGGAAACCGTTTATTATCATTCAATTCCAGATC
CCAAGTGAACTTGGTGCCCGGATTTTCTCCAGCCGTTTCCCAGGCGTCCG
TAATTTTAGGCGGAATCCCGCCAACTTTCTTTAAATCTTCCGCCCTCATA
TTCAAATCACCAGCAAAAATAAAGTTTGTATCGCAAGGTGAATCCGTCAT
CATTTGAAAACATTGTTTCAACTGTTTTTGTCTCTCTGCTGCGCTTTCTT
TTAAACTTTCCAAGTGTGACGTCATCACCGTAATATTTTTCCCGTAAATG
TGAATGTTCTGAGAGAGATAGTGGCGTTGCATTTGAGAGGAAGGGAAAAA
CTTACCGTCCAGCTCACCAATTATTTCTACATGTGATTTCTTTAGGAACA
GGATAACATTGAAATAACCATTCTGCATCAAAGAGCGAACCTCGTAAACA
CTAGAAATAATATATCATCGGTAGACTGAGAAATAATTTTGAAGGTCTGT
ACAGCGGCTAGATCTATAATAAAACTTTGCTAGTGTAAAGCTATTTAAAT
CATATTTTGATTTATACTCGTTGACGAGTTAAACACCAATTATATATAAA
GGATCTGACGTAGCACCTTTATTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072989-exon-scaffold_86-1575043694:297981..298308 | TCONS_00072989-exon-scaffold_86-1575043694:297981..298308 | Clytia hemisphaerica | exon |
| TCONS_00072989-exon-scaffold_86-1575043694:292185..292699 | TCONS_00072989-exon-scaffold_86-1575043694:292185..292699 | Clytia hemisphaerica | exon |
| TCONS_00072989-exon-scaffold_86-1510915933:297981..298308 | TCONS_00072989-exon-scaffold_86-1510915933:297981..298308 | Clytia hemisphaerica | exon |
| TCONS_00072989-exon-scaffold_86-1510915933:292185..292699 | TCONS_00072989-exon-scaffold_86-1510915933:292185..292699 | Clytia hemisphaerica | exon |
| TCONS_00072989-exon-scaffold_86-1491911889:297981..298308 | TCONS_00072989-exon-scaffold_86-1491911889:297981..298308 | Clytia hemisphaerica | exon |
| TCONS_00072989-exon-scaffold_86-1491911889:292185..292699 | TCONS_00072989-exon-scaffold_86-1491911889:292185..292699 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_86 | supercontig | scaffold_86:292185..298308 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR005135 | Endo/exonuclease/phosphatase |
Blast
BLAST of TCONS_00072989 vs. Swiss-Prot (Human)
Match: TYDP2 (Tyrosyl-DNA phosphodiesterase 2 OS=Homo sapiens GN=TDP2 PE=1 SV=1) HSP 1 Score: 149.058 bits (375), Expect = 1.303e-41 Identity = 79/199 (39.70%), Postives = 120/199 (60.30%), Query Frame = -2
Query: 84 SSVYEVRSLMQNGYFNVILFLKKSHVEIIGELDGKFFPSSQMQRHYLSQNIHIYGKNITVMTSHLESLKESAAERQKQLKQCFQMMTDSPCDTNFIFAGDLNMRAEDLKKVGGIPPKITDAWETAGEDPNAKFTWDLELNDNKKFGGNRKPRARFDRMYFKRAQSNPMQCI--GFELIGLERLSCGMFPSDHFGILSKF 674
SS YE+ + + GYF I+ LKKS V++ + + FPS++M R+ L ++++ G + +MTSHLES + AAER QLK + M ++P IFAGD N+R ++ + GG+P I D WE G+ + ++TWD ++N N G + RFDR++F RA + I +L+GLE+L CG FPSDH+G+L
Sbjct: 165 SSNYEIITGHEEGYFTAIM-LKKSRVKLKSQ-EIIPFPSTKMMRNLLCVHVNVSGNELCLMTSHLESTRGHAAERMNQLKMVLKKMQEAPESATVIFAGDTNLRDREVTRCGGLPNNIVDVWEFLGKPKHCQYTWDTQMNSN--LGITAACKLRFDRIFF-RAAAEEGHIIPRSLDLLGLEKLDCGRFPSDHWGLLCNL 358
The following BLAST results are available for this feature:
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