TCONS_00072989 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072989
Unique NameTCONS_00072989
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length843

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072989 ID=TCONS_00072989|Name=TCONS_00072989|organism=Clytia hemisphaerica|type=transcript|length=843bp
CAAAAATAATATCATAGGGAATTAAACGTatgatgaaaaagattttttca
ccATATAATTCCTCGTCAGTCATCTGGAAGAATGAATTTgcttaaaattc
caaaatgatcACTTGGGAACATCCCACAAGACAATCTCTCCAAACCGATC
AATTCAAATCCAATACATTGCATTGGATTCGATTGTGCTCTTTTGAAATA
CATTCGATCGAAGCGCGCACGTGGTTTACGATTACCGCCGAATTTTTTAT
TATCATTCAGTTCCAGATCCCAAGTAAACTTTGCATTTGGATCTTCTCCA
GCCGTTTCCCAGGCGTCTGTAATTTTGGGCGGAATCCCGCcaactttctt
taaatcttCCGCCCTCATATTCAAATCACCagcaaaaataaagtttgtaT
CGCAAGGTGAATCCGTCATCATTtgaaaacattgtttcaacTGTTTTTGT
CTCTCTGCTGCGCTTTCTTTTAAACTTTCCAAGTGTGACGTCATCACCGT
AATATTTTTCCCGTAAATGTGAATGTTCTGAGAGAGATAGTGGCGTTGCA
TTTGAGAGGAAGGGAAAAACTTACCGTCCAGCTCACCAATTATTTCTACA
TGTGATTTCTTTAGGAACAGGATAACATTGAAATAACCATTCTGCATCAA
AGAGCGAACCTCGTAAACACTAGAAATAATATATCATCGGTAGACTGAGA
AATAATTTTGAAGGTCTGTACAGCGGCTAGATCTATAATAAAACTTTGCT
AGTGTAAAGCTATTTaaatcatattttgatttatacTCGTTGACGAGTTA
AACACCAATTATATATAAAGGATCTGACGTAGCACCTTtattc
Run BLAST on NCBI

transcript from alignment at scaffold_86:292185..298308-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072989 ID=TCONS_00072989|Name=TCONS_00072989|organism=Clytia hemisphaerica|type=transcript|length=6124bp|location=Sequence derived from alignment at scaffold_86:292185..298308- (Clytia hemisphaerica)
CAAAAATAATATCATAGGGAATTAAACGTATGATGAAAAAGATTTTTTCA CCATATAATTCCTCGTCAGTCATCTGGAAGAATGAATTTGCTTAAAATTC CAAAATGATCACTTGGGAACATCCCACAAGACAATCTCTCCAAACCGATC AATTCAAATCCAATACATTGCATTGGATTCGATTGTGCTCTTTTGAAATA CATTCGATCGAAGCGCGCACGTGGTTTACGATTACCGCCGAATTTTTTAT TATCATTCAGTTCCAGATCCCAAGTAAACTTTGCATTTGGATCTTCTCCA GCCGTTTCCCAGGCGTCTGTAATTTTGGGCGGGATCCCACCAACCTGTCT CAAATCTTCCGCCCTCATATTCAAGTCACCAGCAAAAATGAAGTTTGTGT CGCTCGGCGAGTCTGTTATTGTTTCAAAACATTGTTTCAATTGTTTTTGT CTCTCTGCAGCACATTCTTTTAAACTTTCCAAGTGTGACGTCATCACTGT AACAGGTTTTCCATGAATGTATAGTTTTTGTAACAAACAGTGACGATCCA TTTGGGAAGAGTAGAAATGCCAACCGTCCAACTCACCAATGACTTTCACG TGCGGTTTCTTTAGGAACATGATTACATTGAAATAACCATCGTGCTCCAA TGTTCGAATCACGTAAAGACTAAAATGAACCGTCCGTAAACTTGGAGGTG TATAAAGGCGTTTTATATTCCTTTTTCTTACTTATCCCATTATTTTAAGG TGATTTTGAAACCTATTGTTTTCAATTTTCCCAGTATCAAAATGTTGAAA AGGCAACTGACAGAACTTGTGAATCAAAATTTTAGTTCACTTATATTCAC TCAGTTGATGATTGTGCTTTTATGTAGTGAACCCACTGACCTTTATATAT CCCTGGCCCAAGATATATCCGCCATCTTTGATCTAAGGTTTTTTTTTTGA ATTGGTGCCCGTAAAGAAGCCATTGCAGTGTTCCAATAACCTCTGCAAAT GAATCCAACATTTGATCCCACATTATTGTTGGATCAAATGTTGGGTTCGT TTGCGCAAGTCTTAAAATTGCAACTTTTTAAGAAAATTGTTGGAAATCAT GTTGGATGAAGATTGATCGCCGTCAAACTTTTCATCCAACATTTTTTAAT GAGATTGACGTCACTTTTATGTTGGTTTCAATGTTGTATGAATTTGCGTA ATCGTGTTGGATGAAAATGTTTGACATTTTTGCGCAAATGACTTTTCATG CAACTTTTCAAATTTTTCCACGTGACTTTTCGTCCAACATTTCGTCCAAC AATGAATTGGAAATGTTGGATTCATTTGCGCCGGCCTTAACGCCGCTACA TCATCAAAAGTTTTCGAGGGAAAGTAGATCTAGCGCTCTCGATGCATTAC ACATTGATCAGTGCCGCCATTAGGGTACCACTTTTCAAAAAACTCTGATC AAAGATTTTGCTTGGCCGGAATTGAGAAACTTGGTCCAGGGTATAAAAAG GTCAGCGAGTAAACACCCTAATAAATAAGATTTTCGATGGCAGCTCCTTC ATACAAAATGGGGACTAGGGGTTCGAAAACAATTGGGTTTTGCTATTGCC AGTCATATCAGACAAATACGAACTTCCTTACAGTAACTTACAACTATAAG ATTCACGTCCCTTCTAGAGAAAAGACGTTTATTCAATAAAAAAGTTTTTT TTTTTAATAATAATAAAATTTATTGGAAATCTTTTCCCGTCGGGGATACT GAAAAGAAGCAAGTAGTTATTCCAAGTGATAAGGAATACACGACATTTTT CAAAATCAGAAATTAGGACTTACGGGAAGAGAATAAAAAGAGAGAGGAAT GTTTGTTGAACAACTTCTTGAAGCATCACAATGGTCGGTAATTTTTTCAA GATGTCTTTCAGAGCTCCTTGGAATCTCTCCATCAAATATTCGTCTTCCA AACCATCAATGTTCCAAGACAGCACTGTGAACTCTTTGGAACCTTCTTGA GGTGGAGCTCTATAGCACAAGAAAAAGATTTTTGATATTGAACGTATATT GCAAAAACATAGTTCCNGTTTTTGCGCAAATGACTTTTCATGCAACTTTT CAAATTTTTCCACGTGACTTTTCGTCCAACATTTCGTCCAACAATGAATT GGAAATGTTGGATTGAATGTTGGATTCATTTGCGCCGGCCTTAACGCCGC TACATCATCAAAAGTTTTCGAGGGAAAGTAGATCTAGCGCTCTCGATGCA TTACACATTGATCAGTGCCGCCATTAGGGTACCACTTTTCAAAAAACTCT GATCAAAGATTTTGCTTGGCCGGGATTGAGAAACTTGGTCCAGGGTATAA AAAGGTCAGCGAGTAAACACCCTAATAAATAAGATTTTCGATGGCAGCTC CTTCATACAAAATGGGGACTAGGGGTTCGAAAACAATTGGGTTTTGCTAT TGCCAGTCATATCAGACAAATACGAACTTCCTTACAGTAACTTACAACTA TAAGATTCACGTCCCTTCTAGAGAAAAGACGTTTATTCAATAAAATAAAA TTTATTGGAAATCTTTTCCCGTCGGCTTTTCTCTAAAGAGGGGTACTGAA AAGAAGCAAATAGTTATTCCAAGTGATAAGGAATACACGACATTTTCAAA ATCAGAAATTAGGACTTACGGGAAGAGAATAAAAAGAGAGAGGAATGTTT GTTGAACAACTTCTTGAAGCATCACAATGGTCGGTAATTTTTTCAAGATG TCTTTCAGAGCTCCTTGGAATCTTTCCATCAAATATTCTTCTTCCAAACC ATCAATGTTCCATGACAGCACTGTGAACTCTTTTGAACCTTCTTGAGGTG GAGCTCTATAGCACAAGAAAAAGATTTTTGATATTGAACGTATATTGCAA AAACATAGTTCTAGGGGAAAATCTTTTGCGTAAAAAAGCTTTTGCCGAAA TTTTTGAATTTCGCGAGTATTCACTTTTGCGAATGGAGCAAAAAAAAAGA CTTGATTTGTTGAATTTAATTCATTTATAACCCCCCCCCCCATTTTCACT AATTTTTGTGAAACACAGGACAAAAGTCTTTGTAAAAAGGGTACTGCATT CTGCTTTAACAAAATATGATGCTTACACTGACGGAGAAGCTTTAGATGAA ACATCTTCCTGAGCCTGAATAATAAAATCATTAACGAATTAAAATGATAC AGTTATATAACAGATGTGGGGTACTTTTATATGCACGAACCTCCACAGAT TCCTTTTCAATCAGCGAACGCAAACCTAAACTAACGGTCACAGACCTGAT TTAGCGTTCGTATCTAGGCCGAAGACTTGCAGAAAATAAATTGAGTAGAA ATTTGTTTTATATCCTTTATATGAATTCAAGCAAGATTTTTATATGATGT TTCAATGGAAATGTTTTGAAAAAAAAAACAAGTTAAAAGATTTTAAACTA AAAAGAATGAAATTAATGCGAATACCTCATATTGAACTACTCATCTCCCG TCTACAAGACCACTGTGGTAACCACTGGGCCATCGCAACTGATGCTATTC CGAGAGGTGCAATATATTCATACTACCCTAACTTCAGATTAGGCCGGTAA CTTTCTAATCAGGTCTTCGGCCGCTAAATCAGGTCTGCATCTACTGACGG AAAAAATTTGCGGTACTCCAATCAATTTTTTATTTATATGGTACAACAGG GCTCTCTTAGTGTTATTGTATCGACAACTAGATAGAATACCACGTTGATT GACCAAGATCAATTAAAGCAATATAGCATATCAATTGTTTATCTTTAAGT AAAATTTGAATTGTCCTTAGAGCTTACTGAGATTCCGTAAAACGCTAAAT CATCATCGTCATCATTCAGTAAATGAGTGAGGTCATCTTTCCCACTATCA TTTGTTTGGGCTTTCTTCGGTACCGGTTGGTTGGCGATGATGTCGTCATC TTTGTCATTCAATAAATAAGTGAGGTCATCTCCACCAATGTCATTTGTTT TTGCTTTCTTCGGTACCGGTTGGTTGACGATGATGTCATTATCTTTGTCA TTCAATAGATGAGTAAGATCGTCTCCATCGCAATTCTCTGTTTCGGTTTT CTTCGGTACCAGCAGATTAGCGACGGCGCCATCTTCTTTATCATTGTCGT CATCACTCAGTACAACGACTTCCCTAACAAAATTGAACGACAAGAGAAAA AAAATAGTGTATTTCAAAAAAACCAAACTTGGATAAAACATGTGTAAAAG CCAAGAATCTTATTACTTGATACTCTACTGAGCTGAACAACTAATCTGGT TAAATTGATTTACAAAACATTGGTTCGCGAAGAGAAATTTGTCAACAAGG TACTAAAAAACCTTTGCTTTCGCTTTGCAGTAGACGAGGTTGGGACTTCC ATATCACCCTATCTTCTCAATCATTGTGAACTTTACATTCGATGATATGA AGCAAGAGCTTTGTTGTAAAATGAAAGATTCGAGACGTTTTCCTGTAAAA TAATGGTCAGTGAAGATCAAACAAAATCAACATTTGTGAACTACGTCGAC TAATCCCATTTGAGTAATCCTAACAAAATCAAATCATCAGCATCGTCATG CAAAATATCATAAAAAGCTAATGAGCCAATCACAAGAAAAACTGATAATA GAAGAATGACCAACTGGCTCATTTATAGGGTTACTTATGTTGTAAAATGG ACTTTAACAAAAAGAAAAATTTTAAATCGGTGAAAAGGGTGTTTTCTCGG TTGGTATTGTCCAATTGCTTAAAATTTCTTCCTAGTTGAGCTTACTAAAA ACATTATGGGTAAGTTTTTATCAAAGTTTTAGTTTCCCTTTACGTCTTAC CTGCGTTGATCTCTTTCTTCGTTTATTTATTATTTTTTTCATTTACTCTC TAAAATATAAAAACAACAATTTTTAAGTCACTTTTTTAAATCAGTCATCG AAAATATCAACTTTCGATGATTGTTAGAGTCCCTTGTTATAGAAAGATAA AGTGAACTTGAGAAGAAGAAAAAAAGAAACTTTAAGCGTGAACGTGGAAA ACATTTTCAACCTCTTGTGGGGATTACACCAACTTTTTTCCTAATCTAGT TTTGAAAGTTTACTAATTCAGTCTATAGTATAGAGAAATTCTGAATATAA TGTACTTTCAACTACTGTATCAGTACTTCACTCCGATCATGGTACCTGGA ATAAAAACTTTTCTTATTGGGGATAAAATAAACGTGATCAAGAGGTGAAT ATGGTTCTTTAAAAATAAAAGATTGATAAAAAACATACATACATAATCTC TAAAACGCAAAATACAATGTAAAAATAAATTCAAAAAACTCTACTATATT TAGTCATCTGGAAGAATAAATTTGCCTAAAATTCCAAAATGGTCACTCGG AAACATCCCACACGACAGTCTTTCAAATCCAACCAGTTCAAAACCAATAC ATTGAACCGGAGTCGATTGTGATCTCTTGAAAAACATCCGGTCAAAACGT GCACGTGGTTTACAGTTCGGAAACCGTTTATTATCATTCAATTCCAGATC CCAAGTGAACTTGGTGCCCGGATTTTCTCCAGCCGTTTCCCAGGCGTCCG TAATTTTAGGCGGAATCCCGCCAACTTTCTTTAAATCTTCCGCCCTCATA TTCAAATCACCAGCAAAAATAAAGTTTGTATCGCAAGGTGAATCCGTCAT CATTTGAAAACATTGTTTCAACTGTTTTTGTCTCTCTGCTGCGCTTTCTT TTAAACTTTCCAAGTGTGACGTCATCACCGTAATATTTTTCCCGTAAATG TGAATGTTCTGAGAGAGATAGTGGCGTTGCATTTGAGAGGAAGGGAAAAA CTTACCGTCCAGCTCACCAATTATTTCTACATGTGATTTCTTTAGGAACA GGATAACATTGAAATAACCATTCTGCATCAAAGAGCGAACCTCGTAAACA CTAGAAATAATATATCATCGGTAGACTGAGAAATAATTTTGAAGGTCTGT ACAGCGGCTAGATCTATAATAAAACTTTGCTAGTGTAAAGCTATTTAAAT CATATTTTGATTTATACTCGTTGACGAGTTAAACACCAATTATATATAAA GGATCTGACGTAGCACCTTTATTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045271XLOC_045271Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072989-exon-scaffold_86-1575043694:297981..298308TCONS_00072989-exon-scaffold_86-1575043694:297981..298308Clytia hemisphaericaexon
TCONS_00072989-exon-scaffold_86-1575043694:292185..292699TCONS_00072989-exon-scaffold_86-1575043694:292185..292699Clytia hemisphaericaexon
TCONS_00072989-exon-scaffold_86-1510915933:297981..298308TCONS_00072989-exon-scaffold_86-1510915933:297981..298308Clytia hemisphaericaexon
TCONS_00072989-exon-scaffold_86-1510915933:292185..292699TCONS_00072989-exon-scaffold_86-1510915933:292185..292699Clytia hemisphaericaexon
TCONS_00072989-exon-scaffold_86-1491911889:297981..298308TCONS_00072989-exon-scaffold_86-1491911889:297981..298308Clytia hemisphaericaexon
TCONS_00072989-exon-scaffold_86-1491911889:292185..292699TCONS_00072989-exon-scaffold_86-1491911889:292185..292699Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_86supercontigscaffold_86:292185..298308 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.44745 4.94175 1.47466 1.48132 3.94218 2.09922 3.71025 2.67529 1.55225 1.6688 1.10483 1.08426 0.415008 0.521411 2.52081 3.22741 2.63339 2.98447 0.765164 0.568644 1.06568 0.642061 5.16018 3.97058 0.0107133 0.0822878 1.03584 0.772794 3.43331 3.59617
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005135Endo/exonuclease/phosphatase
Blast
BLAST of TCONS_00072989 vs. Swiss-Prot (Human)
Match: TYDP2 (Tyrosyl-DNA phosphodiesterase 2 OS=Homo sapiens GN=TDP2 PE=1 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.303e-41
Identity = 79/199 (39.70%), Postives = 120/199 (60.30%), Query Frame = -2
Query:   84 SSVYEVRSLMQNGYFNVILFLKKSHVEIIGELDGKFFPSSQMQRHYLSQNIHIYGKNITVMTSHLESLKESAAERQKQLKQCFQMMTDSPCDTNFIFAGDLNMRAEDLKKVGGIPPKITDAWETAGEDPNAKFTWDLELNDNKKFGGNRKPRARFDRMYFKRAQSNPMQCI--GFELIGLERLSCGMFPSDHFGILSKF 674
            SS YE+ +  + GYF  I+ LKKS V++  + +   FPS++M R+ L  ++++ G  + +MTSHLES +  AAER  QLK   + M ++P     IFAGD N+R  ++ + GG+P  I D WE  G+  + ++TWD ++N N   G     + RFDR++F RA +     I    +L+GLE+L CG FPSDH+G+L   
Sbjct:  165 SSNYEIITGHEEGYFTAIM-LKKSRVKLKSQ-EIIPFPSTKMMRNLLCVHVNVSGNELCLMTSHLESTRGHAAERMNQLKMVLKKMQEAPESATVIFAGDTNLRDREVTRCGGLPNNIVDVWEFLGKPKHCQYTWDTQMNSN--LGITAACKLRFDRIFF-RAAAEEGHIIPRSLDLLGLEKLDCGRFPSDHWGLLCNL 358          
The following BLAST results are available for this feature:
BLAST of TCONS_00072989 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TYDP21.303e-4139.70Tyrosyl-DNA phosphodiesterase 2 OS=Homo sapiens GN... [more]
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