TCONS_00072987 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072987
Unique NameTCONS_00072987
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1679

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072987 ID=TCONS_00072987|Name=TCONS_00072987|organism=Clytia hemisphaerica|type=transcript|length=1679bp
GTTCAGAAGAAGGAGGGTACAGCTAcagTCTGTAAAATAGacatttaaat
aaaattgattgGAAAATGAAGTTGTTATTGCTTATTGGGTCGTGTCTTCT
TGCTACAAGTCAAGCATCGGAATGGGATTACAATGCTGAAGGCGATAACG
GACCAGCTGATTGGGgaaaaagatttccaaaatgtaaCGACACTGCATCC
TCTTCAAGGCAATCGCCAATCAACATTGTTGTTGACAATACCAAATATAA
CGCAAGTTTACCCACACCAGAATTCATCAACTATGACGTTGCACATGCTA
CATCTAACTTGATAATTTCGAATAATGGGCATACAGTTGTTGTTACGCCA
AAATATGCATCTAGTGACTCTAAAGCTCAAATCAAATATAAAGggAAGAC
TTATGAATTAGTACAATTCCATTTCCATTGGGGCTCGGATTCAAAACGTG
GTTCTGAGCATACAATCGACGGAAAGCATTTTCAAGTCGAGGTACATTTT
GTCCATTATAACACAGATGATtttaacaatttcaatgaagCCAAAACAGA
AGAAGGTGGTTTGCTTGTTTATGCACAATTCTTAAAGTCCTTTGCATCAT
CCGCCAATGCTGGTTACCAGGAGATCGTTCCACAGTTCGAAAAAGTCAAG
TACAAAGGTAACACGACTACCATCCCCCATTTCAAATTCGACACATTGCT
TTCAAAGGTGCCCGACAGAATATATTCTTACCCAGGCTCCCTGACGACGC
CCACATGTGACGAAAGTGTTTCCTGGATTGTGAACAGCCAAACAGTTGAA
ATTTCACAAGATCAGatgtcgaaatttttggaattgaaatccAACAAAGG
GGAAACAAACGAAGACCTTGTCAACAATTACCGACCTGTTCAAAAACTAC
AACAACGCACGGTAGAAACCAATGTGCCAGGAAGTGGCGTTACCATTACG
TCATCATTCTCAATGATGCTCATGACAGTTCTCCCAATAGCCTAcgcttt
cttttaatttaaacAGTCACGCCTATGAAAATGCATCAACAACCTCCATA
tcatttgaacaaaaaatttttcagtttcaaaatttgaagctAGATGAACA
TTTCATTtggaattattattattatgcaTACCAATCATTTATTATTAAAA
CTAGGGATGTTTTAGACTATTTCGATTGCAGTAATAGAGAATCTTGAATT
CTAAAGAATTCTAAAGAATCCGGTGGCGGAATTTCGGTCCTTTTTTAGAC
GGTTTCACAGAAGTTGGGGAAAGAATAAGTGGAAttacggaatcgggtac
cccctgaaacccctcGAACACCAAGAACCGTTGTACTCGTTGTTATTTCT
TAgtattcaaaaaaaagtttaattttagaCAAACTTAGTATATGTaagat
atttggtttgatttagtAATAAGCAATCTTTGTGCTAGTATCTTACTCGT
ACCCATTTATTACACTTTGTATATATTGCACTAGGACATTGCACTTTTAC
GATTCTTGTTTGATTTcctgttacacgttttttttattagaacctagttt
ataagaacattgaggctgaaattcgtcgaaaaattaagNttagaacctag
tttataagaacattgaggctgaaattcgtcgaaaaattaagaacatcgta
agaacatgcccagcctcagtttggaaaaa
Run BLAST on NCBI

protein sequence of TCONS_00072987-protein

>TCONS_00072987-protein ID=TCONS_00072987-protein|Name=TCONS_00072987-protein|organism=Clytia hemisphaerica|type=polypeptide|length=313bp
MKLLLLIGSCLLATSQASEWDYNAEGDNGPADWGKRFPKCNDTASSSRQS
PINIVVDNTKYNASLPTPEFINYDVAHATSNLIISNNGHTVVVTPKYASS
DSKAQIKYKGKTYELVQFHFHWGSDSKRGSEHTIDGKHFQVEVHFVHYNT
DDFNNFNEAKTEEGGLLVYAQFLKSFASSANAGYQEIVPQFEKVKYKGNT
TTIPHFKFDTLLSKVPDRIYSYPGSLTTPTCDESVSWIVNSQTVEISQDQ
MSKFLELKSNKGETNEDLVNNYRPVQKLQQRTVETNVPGSGVTITSSFSM
MLMTVLPIAYAFF
Run BLAST on NCBI

transcript from alignment at scaffold_86:233058..240263-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072987 ID=TCONS_00072987|Name=TCONS_00072987|organism=Clytia hemisphaerica|type=transcript|length=7206bp|location=Sequence derived from alignment at scaffold_86:233058..240263- (Clytia hemisphaerica)
GTTCAGAAGAAGGAGGGTACAGCTACAGGTGATTTTTTTTTTTTGGAAAA
AAAAGCTGATAGGTTAGAAAAAGTTGTCGATTTTTGGTGATATGCAACAA
CTTGTATATCTCTGGAATGACTAAATAACAAGTTCAAGTCAAAAGCATTA
ACATAGGCATGGAACTAATGTTATTTTAAATAACTTAATAACTTAAAAAT
AAGAAACTTATGTTCATTTCGATTTAGGCGGGACCTTTTTTGACTATTTT
TTCCATTACATTTTTCAGGTATGATTTTTTTTTTCTGAATTTGATAAAAA
AGTTGACGTAAAACGATGTCGTTGTAATTATTTTTTTAGAAGGTCATCTT
TCTTCCATGTTTAATATACTCAACACAGGTAGAGCAGATAGTCCAAACGA
GAGCTTTGATTGGGAAACTTTAAAAACAAAATTTTGTTTAACAATAAAAT
ATTTATACTGTTTTTCTTTCAGTCTGTAAAATAGACATTTAAATAAAATT
GATTGGAAAATGAAGTTGTTATTGCTTATTGGGTCGTGTCTTCTTGCTAC
AAGTCAAGGTTTGATGTTTTTTCTTACCTATAATTTCCATTTTTAAAGAT
CTTGTAGATAGTTTAAATTCACCTTTATTCTTAAGTTCTAATCATGAAGG
CCTATCTTTTTAGGCAGAAATAAGCTGAAGAGATNTTTAAATTCACCTTT
ATTCTTAAGTTCTAATCATGAAGGCCTATCTTTTTAGGCAGATAAAAGCT
GAAGAGATAAAAAATTACTGATTCAGAGATCTAATAAGTTTAAATACACC
TTTTCGACCGTAGCCGCCAATTGCCGAGCGGGCATTCTTTCCCCCTAAAC
TCAATCCAATCCTTTTTTTACACCTTTTTCTATTGTCTATAGGTGCAAAA
AATAGACTGGGACGATTTTAGGGTGGTCAACGGACAAAAAATGTCCGCGC
GGTAATTGGCGGCTACGGTCGAAAAGGTGTATTAAGTATCAAAGATTTCC
CGTGGGTTTGCTTGATGAAGTGCCAAATCTGTCTATTGATTTACTTTTCA
TCTTCTTTATTTTTCTCAACAGCATCGGAATGGGATTACAATGCTGAAGG
CGATAACGGTATCTTTCATTTTCATTTGACATTGAATATTGAGCATTTAC
TTAATGTTCCTTGCCAGCTAGCACACCATGTTGTTCCAAGGTTCATCTTA
CGTTAGATGTATGTTGCGAGCATTAGATAAACGTTGAAGCAACGTTGTGT
ACCAGCTAGGCTCCCATGGTTCATCATATACACACAGTCTCCAAAGTCTC
CGTTCAAAACATTAGTAAGTAGTAAGTCTGCAACCGCAGTCGGAGGCGAC
CCGAAGGCTCCTCTTTCAATAGCTATCTACCCGAAGGTAGGGGAGGGCAC
CACTCTTTCTCCCTGGATTTCTCCACTTACTCTTGATCCNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCTCT
TAATTGCTGAGCATCAAGCAGAGAGGCATCAAGTACCATTTTGAAAATCT
TTGGTATGACCCGGCTAGGGGTTGAACCCACAACCTTGCGAACCGTAGAC
ATATGCTCTACAACTGCACCACGGTTTGCATTAGATAAAACATTAGATTA
ATAAGCCTGTATAGTGATTGTCGAATGATAAAGTTGAAGTTGTATTTGCA
AAGTAACCTAGATAATTGGTCCAGCGCGTAGCAGAATGGACCTTTAAAAA
GCAACTGATAGAAAAGATTTTGTCTTTGTCGGGGCCTGTGCGCGCGATAA
ATTAACAAGTCCAGGCTAAACCAACCACCGATCTAGAATTTTTACCCCGC
CGACCCGCGCGATGTTTGACCTATGTTTTGGATTGAATTGGTAGTAGAGT
CAAATTTCTCGGTTAGATTAAAGGGTTGTTTCAGGTAGGGTCAGGTAGGG
TTAGGGCTAGGGTTGGGGATGTTCTAATCATAGGTGCTTTGTATATAGTG
GGTTCGAATCCCATCAGCGGCAAAAGTTTCGAAATTTCGGGAAATGCATC
AAAAACTTTCAAAACTTAACAATACAAAGAAAGTGTCAAAGAATAGAAGC
TCAGAGGGGAGGATGGGAAGTAATTTTTTTTGCGTCACTTAAGGAACCCG
GTACGAACGACATTCGGTTATTGCCACGTCAGCTGGACCTTCACGCCGCT
CCGGCTTCTTGTTTTGAGTCTAAAGACGCCTTTGAAATTTTGTAGCGGGT
AGATATCGAATAAAAATCCATTTGGGTGTTCCATTAAATATCCATACAGG
GGGTGGAAAAACCCTTTTAAGCTGAAAAATATGAAATTATGCGGATGCTC
CCTGGAGAACTCGCAAAATTTTCAAACACCCTTAGAAAACAAAAGATTCT
ATTTATATAAAATGGAAAGGTCAATTCCACATTCTAAAAAGATTATCAAA
TCTTCTACAGGACCAGCTGATTGGGGAAAAAGATTTCCAAAATGTAACGA
CACTGCATCCTCTTCAAGGCAATCGCCAATCAACATTGTTGTTGACAATA
CCAAATATAACGCAAGTTTACCCACACCAGAATTCATCAACTATGACGTT
GCACATGCTACATCTAACTTGATAATTTCGAATAATGGGCATACAGTTGT
TGTTACGCCAAAATATGCATCTAGTGACTCTAAAGCTCAAATCAAATATA
AAGGTAAGTTATATTCCAGGGGGGGGGGGCAATGACCTTAACAACCGACG
GGGACGTGTCGCTGGAGTATGAAAAATGGACCCTGTCAGATATGAATATT
TGGTAAATTTGGGGCCCTGTCAGAGAGAAAATTCGATAAATTTTCCTATT
TCCACTCTGAAAAGTGGCTAAAATGAATAAAAGTAGACGAAAAATTGAAA
ATACTTCTAATTTCTACCAGCTAAAAATGGTAAAAAACTACCAAAAGTCA
ACCCTGTCAGAAACACATTATGAAAATCAGCAAATTTTGGATCCTGTCAG
ATATCTTCAGAGCCAAAAAGGGACCCAGACCAGCGGCACGTCCCCGTACC
CAATTTCGCCTAAGTGCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNCCCGTCCCCAATTTCGCCTAAGTGCCCCCCC
CCCCCGGGGTTAGAGTCCTTCTTCCTTGGAACCAAGCCCTAAATCAATGC
AACGTAACCATTGCGGGGTTCTCGACTTCATTGATTTTAAAGTCTGTAAG
GCTAGAGGAGAATTTCTCATCTCAGAGAAAATAGTGGTACATTGTTCGAA
ACCTGGTGATAGATTTTACTTCTAATTTTGTGTTTTGGATAGGAAATAAG
TGGCTCTCTCATCGAAGTGATTTTACAACGTTTCATCAAAAAACCTTCCA
AGGGCAACATGACATAAAAGTTTGCATTTAAGATCACGTTGTACATTTTT
TATATAACCAAGTTGCTAAAGCTTGAGGATGGCTTCTCGTAAAGTAAAAG
CTTTTTAGGTAAATCTAACCATGACAAACGATAACCCTTGACCCAGTAAG
CAAGGTATAATACCAGGTGTGTTCAAAGCAAATTTTTCATAAAACGAGTT
AGAGTGCTCACGCAGCAACCTCGGGTGGGACCCGGAAATTGGATTATTCA
TTCACTTCAGACGTTTTGAGATCACTTTGGTCAAATCAAATCCTCTTTGA
CACCCTTGTCTCACAGCCCCAGTTCAGCTTTTTTGCAAAGCGGGGATAAA
AATTTATATATCGAAATTTTAATAGGAATAGAAATTCTATTGTTCCAATC
TAAAAGAATCCAGTGTGGATGGTTGGGAGTGCAATTGAATTTCGATGGGG
ATGAAATGAAAGTCAATTTCCCAGTGGGGCTGAAATTATATTTTTCCCAT
CGGGGACGGCATTTTAGCCAAATTTTCCAGTGGGCGGAGGTCCATCGGGT
CTGTGACGTAAAGGCTCATTAGTGTATCATTTAAAGGATGGGCTAAATTT
TTTCTTCTTTAGGGAAGACTTATGAATTAGTACAATTCCATTTCCATTGG
GGCTCGGATTCAAAACGTGGTTCTGAGCATACAATCGACGGAAAGCATTT
TCAAGTCGAGGTAAAGAGTGAACAATTTGATATAATTTTTAATTTCATAT
TGAAAGTTTAGCTTGGATCACAGGCTAAATATTAACCACCTCCTAAACTC
CCAATTTTTGTCACGAATATCCGCCATAACTCAGAAGGGCAAATCAGTTA
ATGACACTGGTGGACATATTGTTACATTCTTACAATTTTCTATCATCAAT
CAAATACGGTCATATCAAAATTCGTGAAATGTATTTCAGAATCGTCTGTA
AGAAATGAAGTAAGGTATACTAAAATAAGGGGTTTAGATTNTTCCCTTTC
GAAAATTTGTGAAATGTATTTCAGAATCGTCTACATAAGAAATGATATTT
TCGTCGTAGGTACATTTTGTCCATTATAACACAGATGATTTTAACAATTT
CAATGAAGCCAAAACAGAAGAAGGTGGTTTGCTTGTTTATGCACAATTCT
TAAAGGTAAATATGATGTAATTTTGTATGAAATATCCTTAAAATCAGATT
GTAAAATGGTCTCGTTAATAAGTATAGATACATTGTCCATTTGAGAGATG
ATGTAGTTTCAAAGACAATTCAAAGACTGACTTTTGGCGAAAGCTTAAAT
TTAATTGGAAAAATTTCGAAATTCATGATGATTACTAATACTAACAGACA
GTTTCACCATTCTCTTATCTTTTTTTTTAATATTCTAATAAATTTCAAAC
CAAAAGTTTAGTACTACTACTTAATACTACAATCACATATATCTACAGTC
CTTTGCATCATCCGCCAATGCTGGTTACCAGGAGATCGTTCCACAGTTCG
AAAAAGTCAAGTACAAAGGTTAGATTACTTAATGCTAAAAGGATGATAAA
AACTTACTCTAATACTACTTCTTAACCTGATTCAATAATTAGAACTGTAA
AAAGGGAAATCTTTTCATCCCAAGAATTAATTATTTCGAACTTTCTGACT
ATGAGATCAATGTTTGAAGAACTATCTAAGATTGTGAGCTTTTACGAGCC
CGGATATTTTGTGGAAATAGTCTCTCTAACGTCAAAAAATATCGATATCA
GAATATCAATTCAATTTTTTAGGAACAGACTTGATTTCATAATAAAATGT
TGAATGCTTCATTTAGTTAATAAAGTCAACGGCAAGCCAAATAAATTTTC
AATATTTCTTCATAAATTTCAGGTAACACGACTACCATCCCCCATTTCAA
ATTCGACACATTGCTTTCAAAGGTGCCCGACAGAATATATTCTTACCCAG
GCTCCCTGACGACGCCCACATGTGACGAAAGTGTTTCCTGGATTGTGAAC
AGCCAAACAGTTGAAATTTCACAAGATCAGGTAACAGCCGCTGTGTATCG
CACAAATAACGGACGAGGGTGTCATCGCGTACTAAAATAAAATATAGAGT
GACACATTCAACTTTTTAATTCAATTTAACTTAAGTACAGTAGGGTACAG
TGGAACCTTTAATTAGCGGACACCATTGGGGAAAGGGGTTAGTGTCCGCC
GCTAATTAGAAGTGTCCGCCTTTTAGAAACTTTTGATATCGGTGCTCCAA
TTTTGAAATTAGGCCATCCCAGGGTGTCGAAAATACAAAATTGGAGTATA
AAGTACTTATCTGCAGACACTAGGCCATAGAAGAACAAGAGAAAGGTTAT
TAAAACGCAACAATTTAGTTTTTAACAAACAAATAAAAAGAAAATCAGTG
ATTTATGATTTCTTTGGCCCACCACCGTTGAATGGGTCGAGGGAAAACTG
GAAATTTGTAGAAATAATTTGAATAATAAGACTAATAAGTGCTTGAAATA
AAAATATCTAAAAATATTTTTTTCACTTTTGGACGTCTGTGAACCGTTTG
ATATTCAATGTCCGCTAATTGGAGAGCTAAGATATGGGTTTTGGCCAAAA
TTTGTCCACTAATCAGAGGGTCTGCTAATTGAGTGTCCACCTTTTAGAAA
CTTCTTAATGAGGATTTGACTAGGAAACGGCCGGGGAAAATAAAATTGTC
CGCTAATCAGAGGTGTCCGCCTTTTAGAGTGTCCGTTAATTAGTTCGGTT
AACAATACCTTACTCCATAGTCCGAAGTTTTCTTAACTCGAACAAAGTTG
TATCTCGACTGTACCATTTTAGTGATCAGGATACATTTTGCAGTTAGATT
ATATCAAAATAAATTACATATACTTCTCTCTTTATTTTCAAATTTCATAC
AAGTTTTTATAATTAGCCATATCTTCTTTTTGTTAAATTTAGATGTCGAA
ATTTTTGGAATTGAAATCCAACAAAGGGGAAACAAACGAAGACCTTGTCA
ACAATTACCGACCTGTTCAAAAACTACAACAACGCACGGTAGAAACCAAT
GTGCCAGGAAGTGGCGTTACCATTACGTCATCATTCTCAATGATGCTCAT
GACAGTTCTCCCAATAGCCTACGCTTTCTTTTAATTTAAACAGTCACGCC
TATGAAAATGCATCAACAACCTCCATATCATTTGAACAAAAAATTTTTCA
GTTTCAAAATTTGAAGCTAGATGAACATTTCATTTGGAATTATTATTATT
ATGCATACCAATCATTTATTATTAAAACTAGGGATGTTTTAGACTATTTC
GATTGCAGTAATAGAGAATCTTGAATTCTAAAGAATTCTAAAGAATCCGG
TGGCGGAATTTCGGTCCTTTTTTAGACGGTTTCACAGAAGTTGGGGAAAG
AATAAGTGGAATTACGGAATCGGGTACCCCCTGAAACCCCTCGAACACCA
AGAACCGTTGTACTCGTTGTTATTTCTTAGTATTCAAAAAAAAGTTTAAT
TTTAGACAAACTTAGTATATGTAAGATATTTGGTTTGATTTAGTAATAAG
CAATCTTTGTGCTAGTATCTTACTCGTACCCATTTATTACACTTTGTATA
TATTGCACTAGGACATTGCACTTTTACGATTCTTGTTTGATTTCCTGTTA
CACGTTTTTTTTATTAGAACCTAGTTTATAAGAACATTGAGGCTGAAATT
CGTCGAAAAATTAAGNTTAGAACCTAGTTTATAAGAACATTGAGGCTGAA
ATTCGTCGAAAAATTAAGAACATCGTAAGAACATGCCCAGCCTCAGTTTG
GAAAAA

Coding sequence (CDS) from alignment at scaffold_86:233058..240263-

>TCONS_00072987 ID=TCONS_00072987|Name=TCONS_00072987|organism=Clytia hemisphaerica|type=CDS|length=7536bp|location=Sequence derived from alignment at scaffold_86:233058..240263- (Clytia hemisphaerica)
ATGTCGAAATTTTTGGAATTGAAATCCAACAAAGGGGAAACAAACGAAGA
CCTTGTCAACAATTACCGACCTGTTCAAAAACTACAACAACGCACGGTAG
AAACCAATGTGCCAGGAAGTGGCGTTACCATTACGTCATCATTCTCAATG
ATGCTCATGACAGTTCTCCCAATAGCCTACGCTTTCTTTTAAGTAACACG
ACTACCATCCCCCATTTCAAATTCGACACATTGCTTTCAAAGGTGCCCGA
CAGAATATATTCTTACCCAGGCTCCCTGACGACGCCCACATGTGACGAAA
GTGTTTCCTGGATTGTGAACAGCCAAACAGTTGAAATTTCACAAGATCAG
TCCTTTGCATCATCCGCCAATGCTGGTTACCAGGAGATCGTTCCACAGTT
CGAAAAAGTCAAGTACAAAGGTACATTTTGTCCATTATAACACAGATGAT
TTTAACAATTTCAATGAAGCCAAAACAGAAGAAGGTGGTTTGCTTGTTTA
TGCACAATTCTTAAAGGGAAGACTTATGAATTAGTACAATTCCATTTCCA
TTGGGGCTCGGATTCAAAACGTGGTTCTGAGCATACAATCGACGGAAAGC
ATTTTCAAGTCGAGGACCAGCTGATTGGGGAAAAAGATTTCCAAAATGTA
ACGACACTGCATCCTCTTCAAGGCAATCGCCAATCAACATTGTTGTTGAC
AATACCAAATATAACGCAAGTTTACCCACACCAGAATTCATCAACTATGA
CGTTGCACATGCTACATCTAACTTGATAATTTCGAATAATGGGCATACAG
TTGTTGTTACGCCAAAATATGCATCTAGTGACTCTAAAGCTCAAATCAAA
TATAAAGCATCGGAATGGGATTACAATGCTGAAGGCGATAACGATGAAGT
TGTTATTGCTTATTGGGTCGTGTCTTCTTGCTACAAGTCAAGATGTCGAA
ATTTTTGGAATTGAAATCCAACAAAGGGGAAACAAACGAAGACCTTGTCA
ACAATTACCGACCTGTTCAAAAACTACAACAACGCACGGTAGAAACCAAT
GTGCCAGGAAGTGGCGTTACCATTACGTCATCATTCTCAATGATGCTCAT
GACAGTTCTCCCAATAGCCTACGCTTTCTTTTAAGTAACACGACTACCAT
CCCCCATTTCAAATTCGACACATTGCTTTCAAAGGTGCCCGACAGAATAT
ATTCTTACCCAGGCTCCCTGACGACGCCCACATGTGACGAAAGTGTTTCC
TGGATTGTGAACAGCCAAACAGTTGAAATTTCACAAGATCAGTCCTTTGC
ATCATCCGCCAATGCTGGTTACCAGGAGATCGTTCCACAGTTCGAAAAAG
TCAAGTACAAAGGTACATTTTGTCCATTATAACACAGATGATTTTAACAA
TTTCAATGAAGCCAAAACAGAAGAAGGTGGTTTGCTTGTTTATGCACAAT
TCTTAAAGGGAAGACTTATGAATTAGTACAATTCCATTTCCATTGGGGCT
CGGATTCAAAACGTGGTTCTGAGCATACAATCGACGGAAAGCATTTTCAA
GTCGAGGACCAGCTGATTGGGGAAAAAGATTTCCAAAATGTAACGACACT
GCATCCTCTTCAAGGCAATCGCCAATCAACATTGTTGTTGACAATACCAA
ATATAACGCAAGTTTACCCACACCAGAATTCATCAACTATGACGTTGCAC
ATGCTACATCTAACTTGATAATTTCGAATAATGGGCATACAGTTGTTGTT
ACGCCAAAATATGCATCTAGTGACTCTAAAGCTCAAATCAAATATAAAGC
ATCGGAATGGGATTACAATGCTGAAGGCGATAACGATGAAGTTGTTATTG
CTTATTGGGTCGTGTCTTCTTGCTACAAGTCAAGATGTCGAAATTTTTGG
AATTGAAATCCAACAAAGGGGAAACAAACGAAGACCTTGTCAACAATTAC
CGACCTGTTCAAAAACTACAACAACGCACGGTAGAAACCAATGTGCCAGG
AAGTGGCGTTACCATTACGTCATCATTCTCAATGATGCTCATGACAGTTC
TCCCAATAGCCTACGCTTTCTTTTAAGTAACACGACTACCATCCCCCATT
TCAAATTCGACACATTGCTTTCAAAGGTGCCCGACAGAATATATTCTTAC
CCAGGCTCCCTGACGACGCCCACATGTGACGAAAGTGTTTCCTGGATTGT
GAACAGCCAAACAGTTGAAATTTCACAAGATCAGTCCTTTGCATCATCCG
CCAATGCTGGTTACCAGGAGATCGTTCCACAGTTCGAAAAAGTCAAGTAC
AAAGGTACATTTTGTCCATTATAACACAGATGATTTTAACAATTTCAATG
AAGCCAAAACAGAAGAAGGTGGTTTGCTTGTTTATGCACAATTCTTAAAG
GGAAGACTTATGAATTAGTACAATTCCATTTCCATTGGGGCTCGGATTCA
AAACGTGGTTCTGAGCATACAATCGACGGAAAGCATTTTCAAGTCGAGGA
CCAGCTGATTGGGGAAAAAGATTTCCAAAATGTAACGACACTGCATCCTC
TTCAAGGCAATCGCCAATCAACATTGTTGTTGACAATACCAAATATAACG
CAAGTTTACCCACACCAGAATTCATCAACTATGACGTTGCACATGCTACA
TCTAACTTGATAATTTCGAATAATGGGCATACAGTTGTTGTTACGCCAAA
ATATGCATCTAGTGACTCTAAAGCTCAAATCAAATATAAAGCATCGGAAT
GGGATTACAATGCTGAAGGCGATAACGATGAAGTTGTTATTGCTTATTGG
GTCGTGTCTTCTTGCTACAAGTCAAGATGTCGAAATTTTTGGAATTGAAA
TCCAACAAAGGGGAAACAAACGAAGACCTTGTCAACAATTACCGACCTGT
TCAAAAACTACAACAACGCACGGTAGAAACCAATGTGCCAGGAAGTGGCG
TTACCATTACGTCATCATTCTCAATGATGCTCATGACAGTTCTCCCAATA
GCCTACGCTTTCTTTTAAGTAACACGACTACCATCCCCCATTTCAAATTC
GACACATTGCTTTCAAAGGTGCCCGACAGAATATATTCTTACCCAGGCTC
CCTGACGACGCCCACATGTGACGAAAGTGTTTCCTGGATTGTGAACAGCC
AAACAGTTGAAATTTCACAAGATCAGTCCTTTGCATCATCCGCCAATGCT
GGTTACCAGGAGATCGTTCCACAGTTCGAAAAAGTCAAGTACAAAGGTAC
ATTTTGTCCATTATAACACAGATGATTTTAACAATTTCAATGAAGCCAAA
ACAGAAGAAGGTGGTTTGCTTGTTTATGCACAATTCTTAAAGGGAAGACT
TATGAATTAGTACAATTCCATTTCCATTGGGGCTCGGATTCAAAACGTGG
TTCTGAGCATACAATCGACGGAAAGCATTTTCAAGTCGAGGACCAGCTGA
TTGGGGAAAAAGATTTCCAAAATGTAACGACACTGCATCCTCTTCAAGGC
AATCGCCAATCAACATTGTTGTTGACAATACCAAATATAACGCAAGTTTA
CCCACACCAGAATTCATCAACTATGACGTTGCACATGCTACATCTAACTT
GATAATTTCGAATAATGGGCATACAGTTGTTGTTACGCCAAAATATGCAT
CTAGTGACTCTAAAGCTCAAATCAAATATAAAGCATCGGAATGGGATTAC
AATGCTGAAGGCGATAACGATGAAGTTGTTATTGCTTATTGGGTCGTGTC
TTCTTGCTACAAGTCAAGATGTCGAAATTTTTGGAATTGAAATCCAACAA
AGGGGAAACAAACGAAGACCTTGTCAACAATTACCGACCTGTTCAAAAAC
TACAACAACGCACGGTAGAAACCAATGTGCCAGGAAGTGGCGTTACCATT
ACGTCATCATTCTCAATGATGCTCATGACAGTTCTCCCAATAGCCTACGC
TTTCTTTTAAGTAACACGACTACCATCCCCCATTTCAAATTCGACACATT
GCTTTCAAAGGTGCCCGACAGAATATATTCTTACCCAGGCTCCCTGACGA
CGCCCACATGTGACGAAAGTGTTTCCTGGATTGTGAACAGCCAAACAGTT
GAAATTTCACAAGATCAGTCCTTTGCATCATCCGCCAATGCTGGTTACCA
GGAGATCGTTCCACAGTTCGAAAAAGTCAAGTACAAAGGTACATTTTGTC
CATTATAACACAGATGATTTTAACAATTTCAATGAAGCCAAAACAGAAGA
AGGTGGTTTGCTTGTTTATGCACAATTCTTAAAGGGAAGACTTATGAATT
AGTACAATTCCATTTCCATTGGGGCTCGGATTCAAAACGTGGTTCTGAGC
ATACAATCGACGGAAAGCATTTTCAAGTCGAGGACCAGCTGATTGGGGAA
AAAGATTTCCAAAATGTAACGACACTGCATCCTCTTCAAGGCAATCGCCA
ATCAACATTGTTGTTGACAATACCAAATATAACGCAAGTTTACCCACACC
AGAATTCATCAACTATGACGTTGCACATGCTACATCTAACTTGATAATTT
CGAATAATGGGCATACAGTTGTTGTTACGCCAAAATATGCATCTAGTGAC
TCTAAAGCTCAAATCAAATATAAAGCATCGGAATGGGATTACAATGCTGA
AGGCGATAACGATGAAGTTGTTATTGCTTATTGGGTCGTGTCTTCTTGCT
ACAAGTCAAGATGTCGAAATTTTTGGAATTGAAATCCAACAAAGGGGAAA
CAAACGAAGACCTTGTCAACAATTACCGACCTGTTCAAAAACTACAACAA
CGCACGGTAGAAACCAATGTGCCAGGAAGTGGCGTTACCATTACGTCATC
ATTCTCAATGATGCTCATGACAGTTCTCCCAATAGCCTACGCTTTCTTTT
AAGTAACACGACTACCATCCCCCATTTCAAATTCGACACATTGCTTTCAA
AGGTGCCCGACAGAATATATTCTTACCCAGGCTCCCTGACGACGCCCACA
TGTGACGAAAGTGTTTCCTGGATTGTGAACAGCCAAACAGTTGAAATTTC
ACAAGATCAGTCCTTTGCATCATCCGCCAATGCTGGTTACCAGGAGATCG
TTCCACAGTTCGAAAAAGTCAAGTACAAAGGTACATTTTGTCCATTATAA
CACAGATGATTTTAACAATTTCAATGAAGCCAAAACAGAAGAAGGTGGTT
TGCTTGTTTATGCACAATTCTTAAAGGGAAGACTTATGAATTAGTACAAT
TCCATTTCCATTGGGGCTCGGATTCAAAACGTGGTTCTGAGCATACAATC
GACGGAAAGCATTTTCAAGTCGAGGACCAGCTGATTGGGGAAAAAGATTT
CCAAAATGTAACGACACTGCATCCTCTTCAAGGCAATCGCCAATCAACAT
TGTTGTTGACAATACCAAATATAACGCAAGTTTACCCACACCAGAATTCA
TCAACTATGACGTTGCACATGCTACATCTAACTTGATAATTTCGAATAAT
GGGCATACAGTTGTTGTTACGCCAAAATATGCATCTAGTGACTCTAAAGC
TCAAATCAAATATAAAGCATCGGAATGGGATTACAATGCTGAAGGCGATA
ACGATGAAGTTGTTATTGCTTATTGGGTCGTGTCTTCTTGCTACAAGTCA
AGATGTCGAAATTTTTGGAATTGAAATCCAACAAAGGGGAAACAAACGAA
GACCTTGTCAACAATTACCGACCTGTTCAAAAACTACAACAACGCACGGT
AGAAACCAATGTGCCAGGAAGTGGCGTTACCATTACGTCATCATTCTCAA
TGATGCTCATGACAGTTCTCCCAATAGCCTACGCTTTCTTTTAAGTAACA
CGACTACCATCCCCCATTTCAAATTCGACACATTGCTTTCAAAGGTGCCC
GACAGAATATATTCTTACCCAGGCTCCCTGACGACGCCCACATGTGACGA
AAGTGTTTCCTGGATTGTGAACAGCCAAACAGTTGAAATTTCACAAGATC
AGTCCTTTGCATCATCCGCCAATGCTGGTTACCAGGAGATCGTTCCACAG
TTCGAAAAAGTCAAGTACAAAGGTACATTTTGTCCATTATAACACAGATG
ATTTTAACAATTTCAATGAAGCCAAAACAGAAGAAGGTGGTTTGCTTGTT
TATGCACAATTCTTAAAGGGAAGACTTATGAATTAGTACAATTCCATTTC
CATTGGGGCTCGGATTCAAAACGTGGTTCTGAGCATACAATCGACGGAAA
GCATTTTCAAGTCGAGGACCAGCTGATTGGGGAAAAAGATTTCCAAAATG
TAACGACACTGCATCCTCTTCAAGGCAATCGCCAATCAACATTGTTGTTG
ACAATACCAAATATAACGCAAGTTTACCCACACCAGAATTCATCAACTAT
GACGTTGCACATGCTACATCTAACTTGATAATTTCGAATAATGGGCATAC
AGTTGTTGTTACGCCAAAATATGCATCTAGTGACTCTAAAGCTCAAATCA
AATATAAAGCATCGGAATGGGATTACAATGCTGAAGGCGATAACGATGAA
GTTGTTATTGCTTATTGGGTCGTGTCTTCTTGCTACAAGTCAAGATGTCG
AAATTTTTGGAATTGAAATCCAACAAAGGGGAAACAAACGAAGACCTTGT
CAACAATTACCGACCTGTTCAAAAACTACAACAACGCACGGTAGAAACCA
ATGTGCCAGGAAGTGGCGTTACCATTACGTCATCATTCTCAATGATGCTC
ATGACAGTTCTCCCAATAGCCTACGCTTTCTTTTAAGTAACACGACTACC
ATCCCCCATTTCAAATTCGACACATTGCTTTCAAAGGTGCCCGACAGAAT
ATATTCTTACCCAGGCTCCCTGACGACGCCCACATGTGACGAAAGTGTTT
CCTGGATTGTGAACAGCCAAACAGTTGAAATTTCACAAGATCAGTCCTTT
GCATCATCCGCCAATGCTGGTTACCAGGAGATCGTTCCACAGTTCGAAAA
AGTCAAGTACAAAGGTACATTTTGTCCATTATAACACAGATGATTTTAAC
AATTTCAATGAAGCCAAAACAGAAGAAGGTGGTTTGCTTGTTTATGCACA
ATTCTTAAAGGGAAGACTTATGAATTAGTACAATTCCATTTCCATTGGGG
CTCGGATTCAAAACGTGGTTCTGAGCATACAATCGACGGAAAGCATTTTC
AAGTCGAGGACCAGCTGATTGGGGAAAAAGATTTCCAAAATGTAACGACA
CTGCATCCTCTTCAAGGCAATCGCCAATCAACATTGTTGTTGACAATACC
AAATATAACGCAAGTTTACCCACACCAGAATTCATCAACTATGACGTTGC
ACATGCTACATCTAACTTGATAATTTCGAATAATGGGCATACAGTTGTTG
TTACGCCAAAATATGCATCTAGTGACTCTAAAGCTCAAATCAAATATAAA
GCATCGGAATGGGATTACAATGCTGAAGGCGATAACGATGAAGTTGTTAT
TGCTTATTGGGTCGTGTCTTCTTGCTACAAGTCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045269XLOC_045269Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072987-exon-scaffold_86-1575043694:240236..240263TCONS_00072987-exon-scaffold_86-1575043694:240236..240263Clytia hemisphaericaexon
TCONS_00072987-exon-scaffold_86-1575043694:239706..239791TCONS_00072987-exon-scaffold_86-1575043694:239706..239791Clytia hemisphaericaexon
TCONS_00072987-exon-scaffold_86-1575043694:239156..239191TCONS_00072987-exon-scaffold_86-1575043694:239156..239191Clytia hemisphaericaexon
TCONS_00072987-exon-scaffold_86-1575043694:237561..237803TCONS_00072987-exon-scaffold_86-1575043694:237561..237803Clytia hemisphaericaexon
TCONS_00072987-exon-scaffold_86-1575043694:236154..236251TCONS_00072987-exon-scaffold_86-1575043694:236154..236251Clytia hemisphaericaexon
TCONS_00072987-exon-scaffold_86-1575043694:235709..235804TCONS_00072987-exon-scaffold_86-1575043694:235709..235804Clytia hemisphaericaexon
TCONS_00072987-exon-scaffold_86-1575043694:235346..235415TCONS_00072987-exon-scaffold_86-1575043694:235346..235415Clytia hemisphaericaexon
TCONS_00072987-exon-scaffold_86-1575043694:234834..234991TCONS_00072987-exon-scaffold_86-1575043694:234834..234991Clytia hemisphaericaexon
TCONS_00072987-exon-scaffold_86-1575043694:233058..233921TCONS_00072987-exon-scaffold_86-1575043694:233058..233921Clytia hemisphaericaexon
TCONS_00072987-exon-scaffold_86-1510915933:240236..240263TCONS_00072987-exon-scaffold_86-1510915933:240236..240263Clytia hemisphaericaexon
TCONS_00072987-exon-scaffold_86-1510915933:239706..239791TCONS_00072987-exon-scaffold_86-1510915933:239706..239791Clytia hemisphaericaexon
TCONS_00072987-exon-scaffold_86-1510915933:239156..239191TCONS_00072987-exon-scaffold_86-1510915933:239156..239191Clytia hemisphaericaexon
TCONS_00072987-exon-scaffold_86-1510915933:237561..237803TCONS_00072987-exon-scaffold_86-1510915933:237561..237803Clytia hemisphaericaexon
TCONS_00072987-exon-scaffold_86-1510915933:236154..236251TCONS_00072987-exon-scaffold_86-1510915933:236154..236251Clytia hemisphaericaexon
TCONS_00072987-exon-scaffold_86-1510915933:235709..235804TCONS_00072987-exon-scaffold_86-1510915933:235709..235804Clytia hemisphaericaexon
TCONS_00072987-exon-scaffold_86-1510915933:235346..235415TCONS_00072987-exon-scaffold_86-1510915933:235346..235415Clytia hemisphaericaexon
TCONS_00072987-exon-scaffold_86-1510915933:234834..234991TCONS_00072987-exon-scaffold_86-1510915933:234834..234991Clytia hemisphaericaexon
TCONS_00072987-exon-scaffold_86-1510915933:233058..233921TCONS_00072987-exon-scaffold_86-1510915933:233058..233921Clytia hemisphaericaexon
TCONS_00072987-exon-scaffold_86-1491911889:240236..240263TCONS_00072987-exon-scaffold_86-1491911889:240236..240263Clytia hemisphaericaexon
TCONS_00072987-exon-scaffold_86-1491911889:239706..239791TCONS_00072987-exon-scaffold_86-1491911889:239706..239791Clytia hemisphaericaexon
TCONS_00072987-exon-scaffold_86-1491911889:239156..239191TCONS_00072987-exon-scaffold_86-1491911889:239156..239191Clytia hemisphaericaexon
TCONS_00072987-exon-scaffold_86-1491911889:237561..237803TCONS_00072987-exon-scaffold_86-1491911889:237561..237803Clytia hemisphaericaexon
TCONS_00072987-exon-scaffold_86-1491911889:236154..236251TCONS_00072987-exon-scaffold_86-1491911889:236154..236251Clytia hemisphaericaexon
TCONS_00072987-exon-scaffold_86-1491911889:235709..235804TCONS_00072987-exon-scaffold_86-1491911889:235709..235804Clytia hemisphaericaexon
TCONS_00072987-exon-scaffold_86-1491911889:235346..235415TCONS_00072987-exon-scaffold_86-1491911889:235346..235415Clytia hemisphaericaexon
TCONS_00072987-exon-scaffold_86-1491911889:234834..234991TCONS_00072987-exon-scaffold_86-1491911889:234834..234991Clytia hemisphaericaexon
TCONS_00072987-exon-scaffold_86-1491911889:233058..233921TCONS_00072987-exon-scaffold_86-1491911889:233058..233921Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072987-proteinTCONS_00072987-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_86supercontigscaffold_86:233058..240263 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0250611	0.0501345	0.0569535	0.0856081	3.8318	3.99442	60.4411	69.1064	140.894	119.907	119.905	117.49	79.5504	81.3225	112.514	157.301	16.276	18.1334	64.58	67.0169	30.543	29.942	18.9077	21.4124	29.2971	27.1761	8.35961	9.544	91.6066	99.8561
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001148Carbonic_anhydrase_a
IPR018338Carbonic_anhydrase_a-class_CS
Vocabulary: Molecular Function
TermDefinition
GO:0004089carbonate dehydratase activity
GO:0008270zinc ion binding
Vocabulary: Biological Process
TermDefinition
GO:0006730one-carbon metabolic process
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006730 one-carbon metabolic process
molecular_function GO:0004089 carbonate dehydratase activity
molecular_function GO:0008270 zinc ion binding
Blast
[Close]
BLAST of TCONS_00072987 vs. Swiss-Prot (Human)
Match: CAH2 (Carbonic anhydrase 2 OS=Homo sapiens GN=CA2 PE=1 SV=2)

HSP 1 Score: 170.629 bits (431), Expect = 3.693e-48
Identity = 107/270 (39.63%), Postives = 151/270 (55.93%), Query Frame = 3 
Query:  123 WDYNAEGDNGPADWGKRFPKCNDTASSSRQSPINIVVDNTKYNASLPTPEFINYDVAHATSNLIISNNGHTVVVTPKYASSDSKAQIKYK--GKTYELVQFHFHWGSDSKRGSEHTIDGKHFQVEVHFVHYNTDDFNNFNEAKTEEGGLLVYAQFLKSFASSANAGYQEIVPQFEKVKYKGNTTTIPHFKFDTLLSKVPDRIYSYPGSLTTPTCDESVSWIVNSQTVEISQDQMSKFLELKSN-KGETNEDLVNNYRPVQKLQQRTVETN 923
            W Y     NGP  W K FP     A   RQSP++I     KY+ SL  P  ++YD A   ++L I NNGH   V  ++  S  KA +K      TY L+QFHFHWGS   +GSEHT+D K +  E+H VH+NT  + +F +A  +  GL V   FLK    SA  G Q++V   + +K KG +    +F    LL +  D  ++YPGSLTTP   E V+WIV  + + +S +Q+ KF +L  N +GE  E +V+N+RP Q L+ R ++ +
Sbjct:    5 WGYGKH--NGPEHWHKDFP----IAKGERQSPVDIDTHTAKYDPSL-KPLSVSYDQA---TSLRILNNGHAFNV--EFDDSQDKAVLKGGPLDGTYRLIQFHFHWGSLDGQGSEHTVDKKKYAAELHLVHWNT-KYGDFGKAVQQPDGLAVLGIFLK--VGSAKPGLQKVVDVLDSIKTKGKSADFTNFDPRGLLPESLD-YWTYPGSLTTPPLLECVTWIVLKEPISVSSEQVLKFRKLNFNGEGEPEELMVDNWRPAQPLKNRQIKAS 258
The following BLAST results are available for this feature:
BLAST of TCONS_00072987 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CAH23.693e-4839.63Carbonic anhydrase 2 OS=Homo sapiens GN=CA2 PE=1 S... [more]
back to top