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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072985 ID=TCONS_00072985|Name=TCONS_00072985|organism=Clytia hemisphaerica|type=transcript|length=445bp
CGCGTTCTTTTAGATCCAATCAGgcaattgtttttcaaaatggaaAGAGT
TCAGAGGAATCGAAAAGAAAACCCAAAATTCAAACAAAGTGATGAAATCG
GTTCTGACGATGGGCCACTCGTAACCATCATTTTTACAGAGCCAGAGGCT
GATGGCAACCATCTTACGTTGACTCTTCCGTACAACAAATTCAAGCCCCT
GGACGAAAAGGGTCAAAGTATCCCAATGTCAGGGATAAAAGTTGGTCGAC
GTGGTTTTTTCTGGTATCCACATCACAAGAAATACTACGAAGCTTGCGTG
ACAGCTGTTGCCAAAAAACGAAAAGGTAATTGTTCAGTCCAATAATTTTG
ATTGATATTTGTGACTACcattatacttttgaatccaAGACGGTCAAGAC
GGTGCTAATGGACCAAATAAACTTCCATCtcttctttgtattttc Run BLAST on NCBI protein sequence of TCONS_00072985-protein >TCONS_00072985-protein ID=TCONS_00072985-protein|Name=TCONS_00072985-protein|organism=Clytia hemisphaerica|type=polypeptide|length=114bp
RVLLDPIRQLFFKMERVQRNRKENPKFKQSDEIGSDDGPLVTIIFTEPEA
DGNHLTLTLPYNKFKPLDEKGQSIPMSGIKVGRRGFFWYPHHKKYYEACV
TAVAKKRKGNCSVQ Run BLAST on NCBI transcript from alignment at scaffold_86:103734..105029- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072985 ID=TCONS_00072985|Name=TCONS_00072985|organism=Clytia hemisphaerica|type=transcript|length=1296bp|location=Sequence derived from alignment at scaffold_86:103734..105029- (Clytia hemisphaerica)
CGCGTTCTTTTAGATCCAATCAGGCAATTGTTTTTCAAAATGGAAAGAGT
TCAGAGGAATCGAAAAGAAAACCCAAAATTCAAACAAAGTGATGAAATCG
GTAAGAGTATTTTTCAGTGACATACCCATCTAATTTTGTCTCGAAAAATC
CTACAATCTCTCGTGATTCTATTCTGAAGGAAGAAGAAGAAATGGGGAAA
AAGGAAAAGTAATTTAAATAGGATCGGGATAATCAATTTTAAGATTTTAA
TATCTTTTCAAATCCTTTTTTTTTATTTTTAAAAGAAAAATACACACGCT
TTTTTAAAATAAGAATATCTTCTATAAGAATATCAGGGTGAAAATTTCTT
CCGGGAAGAGCCCAATTTGATAAGAATACAGTTACAGTCACTTGTATTTG
GTGAACTTTGATGCAGAAATATAATTTTAGCTACCCATATGAGCTCCATA
CAAAAAGGTGTATGCTAATATAAAAAAATATATTAAAAGTTATGTATACA
AAAAATGCCAAAATGTAGTATCCAGACAAGAAATTCAGAAATTTTATAGC
ACACTGAAAATTGTTAATCCCATCTTGAATCTTTCCAGAATTTCTCCAAA
AAAACAGAAAAATATAAATCATCATTTTAAAAGAAAATTTCCTTTGTTCA
AAGTAGCATCGTTTCAACGTGTTATTTTGTACAAATAACCAATTTCATGT
TGCAAAAGTCAGCTCTTTTAAAATTACATGGGTATTTATGAAGGAAGGTC
TGAGATTTTAGTACTGACCCCCACCCCCTACTGTGAAAGGTCAACTAAAA
ACCTCACTCGATAATTTTACTCTTTTCAGGTTCTGACGATGGGCCACTCG
TAACCATCATTTTTACAGAGCCAGAGGCTGATGNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNCTTATAAAAACCTCACTCGATAATTTTACTCTTTTCA
GGTTCTGACGATGGGCCACTCGTAACCATCATTTTTACAGAGCCAGAGGC
TGATGGCAACCATCTTACGTTGACTCTTCCGTACAACAAATTCAAGCCCC
TGGACGAAAAGGGTCAAAGTATCCCAATGTCAGGGATAAAAGTTGGTCGA
CGTGGTTTTTTCTGGTATCCACATCACAAGAAATACTACGAAGCTTGCGT
GACAGCTGTTGCCAAAAAACGAAAAGGTAATTGTTCAGTCCAATAATTTT
GATTGATATTTGTGACTACCATTATACTTTTGAATCCAAGACGGTCAAGA
CGGTGCTAATGGACCAAATAAACTTCCATCTCTTCTTTGTATTTTC Coding sequence (CDS) from alignment at scaffold_86:103734..105029- >TCONS_00072985 ID=TCONS_00072985|Name=TCONS_00072985|organism=Clytia hemisphaerica|type=CDS|length=1035bp|location=Sequence derived from alignment at scaffold_86:103734..105029- (Clytia hemisphaerica)
GCTGATGGCAACCATCTTACGTTGACTCTTCCGTACAACAAATTCAAGCC
CCTGGACGAAAAGGGTCAAAGTATCCCAATGTCAGGGATAAAAGTTGGTC
GACGTGGTTTTTTCTGGTATCCACATCACAAGAAATACTACGAAGCTTGC
GTGACAGCTGTTGCCAAAAAACGAAAAGGTAATTGTTCAGTCCAATAAGT
TCTGACGATGGGCCACTCGTAACCATCATTTTTACAGAGCCAGAGCGCGT
TCTTTTAGATCCAATCAGGCAATTGTTTTTCAAAATGGAAAGAGTTCAGA
GGAATCGAAAAGAAAACCCAAAATTCAAACAAAGTGATGAAATCGGCTGA
TGGCAACCATCTTACGTTGACTCTTCCGTACAACAAATTCAAGCCCCTGG
ACGAAAAGGGTCAAAGTATCCCAATGTCAGGGATAAAAGTTGGTCGACGT
GGTTTTTTCTGGTATCCACATCACAAGAAATACTACGAAGCTTGCGTGAC
AGCTGTTGCCAAAAAACGAAAAGGTAATTGTTCAGTCCAATAAGTTCTGA
CGATGGGCCACTCGTAACCATCATTTTTACAGAGCCAGAGCGCGTTCTTT
TAGATCCAATCAGGCAATTGTTTTTCAAAATGGAAAGAGTTCAGAGGAAT
CGAAAAGAAAACCCAAAATTCAAACAAAGTGATGAAATCGGCTGATGGCA
ACCATCTTACGTTGACTCTTCCGTACAACAAATTCAAGCCCCTGGACGAA
AAGGGTCAAAGTATCCCAATGTCAGGGATAAAAGTTGGTCGACGTGGTTT
TTTCTGGTATCCACATCACAAGAAATACTACGAAGCTTGCGTGACAGCTG
TTGCCAAAAAACGAAAAGGTAATTGTTCAGTCCAATAAGTTCTGACGATG
GGCCACTCGTAACCATCATTTTTACAGAGCCAGAGCGCGTTCTTTTAGAT
CCAATCAGGCAATTGTTTTTCAAAATGGAAAGAGTTCAGAGGAATCGAAA
AGAAAACCCAAAATTCAAACAAAGTGATGAAATCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072985-exon-scaffold_86-1575043694:104930..105029 | TCONS_00072985-exon-scaffold_86-1575043694:104930..105029 | Clytia hemisphaerica | exon |
| TCONS_00072985-exon-scaffold_86-1575043694:104154..104200 | TCONS_00072985-exon-scaffold_86-1575043694:104154..104200 | Clytia hemisphaerica | exon |
| TCONS_00072985-exon-scaffold_86-1575043694:103734..104031 | TCONS_00072985-exon-scaffold_86-1575043694:103734..104031 | Clytia hemisphaerica | exon |
| TCONS_00072985-exon-scaffold_86-1510915933:104930..105029 | TCONS_00072985-exon-scaffold_86-1510915933:104930..105029 | Clytia hemisphaerica | exon |
| TCONS_00072985-exon-scaffold_86-1510915933:104154..104200 | TCONS_00072985-exon-scaffold_86-1510915933:104154..104200 | Clytia hemisphaerica | exon |
| TCONS_00072985-exon-scaffold_86-1510915933:103734..104031 | TCONS_00072985-exon-scaffold_86-1510915933:103734..104031 | Clytia hemisphaerica | exon |
| TCONS_00072985-exon-scaffold_86-1491911889:104930..105029 | TCONS_00072985-exon-scaffold_86-1491911889:104930..105029 | Clytia hemisphaerica | exon |
| TCONS_00072985-exon-scaffold_86-1491911889:104154..104200 | TCONS_00072985-exon-scaffold_86-1491911889:104154..104200 | Clytia hemisphaerica | exon |
| TCONS_00072985-exon-scaffold_86-1491911889:103734..104031 | TCONS_00072985-exon-scaffold_86-1491911889:103734..104031 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_86 | supercontig | scaffold_86:103734..105029 - |
Blast
The following BLAST results are available for this feature:
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