TCONS_00072985 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072985
Unique NameTCONS_00072985
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length445

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072985 ID=TCONS_00072985|Name=TCONS_00072985|organism=Clytia hemisphaerica|type=transcript|length=445bp
CGCGTTCTTTTAGATCCAATCAGgcaattgtttttcaaaatggaaAGAGT
TCAGAGGAATCGAAAAGAAAACCCAAAATTCAAACAAAGTGATGAAATCG
GTTCTGACGATGGGCCACTCGTAACCATCATTTTTACAGAGCCAGAGGCT
GATGGCAACCATCTTACGTTGACTCTTCCGTACAACAAATTCAAGCCCCT
GGACGAAAAGGGTCAAAGTATCCCAATGTCAGGGATAAAAGTTGGTCGAC
GTGGTTTTTTCTGGTATCCACATCACAAGAAATACTACGAAGCTTGCGTG
ACAGCTGTTGCCAAAAAACGAAAAGGTAATTGTTCAGTCCAATAATTTTG
ATTGATATTTGTGACTACcattatacttttgaatccaAGACGGTCAAGAC
GGTGCTAATGGACCAAATAAACTTCCATCtcttctttgtattttc
Run BLAST on NCBI

protein sequence of TCONS_00072985-protein

>TCONS_00072985-protein ID=TCONS_00072985-protein|Name=TCONS_00072985-protein|organism=Clytia hemisphaerica|type=polypeptide|length=114bp
RVLLDPIRQLFFKMERVQRNRKENPKFKQSDEIGSDDGPLVTIIFTEPEA
DGNHLTLTLPYNKFKPLDEKGQSIPMSGIKVGRRGFFWYPHHKKYYEACV
TAVAKKRKGNCSVQ
Run BLAST on NCBI

transcript from alignment at scaffold_86:103734..105029-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072985 ID=TCONS_00072985|Name=TCONS_00072985|organism=Clytia hemisphaerica|type=transcript|length=1296bp|location=Sequence derived from alignment at scaffold_86:103734..105029- (Clytia hemisphaerica)
CGCGTTCTTTTAGATCCAATCAGGCAATTGTTTTTCAAAATGGAAAGAGT TCAGAGGAATCGAAAAGAAAACCCAAAATTCAAACAAAGTGATGAAATCG GTAAGAGTATTTTTCAGTGACATACCCATCTAATTTTGTCTCGAAAAATC CTACAATCTCTCGTGATTCTATTCTGAAGGAAGAAGAAGAAATGGGGAAA AAGGAAAAGTAATTTAAATAGGATCGGGATAATCAATTTTAAGATTTTAA TATCTTTTCAAATCCTTTTTTTTTATTTTTAAAAGAAAAATACACACGCT TTTTTAAAATAAGAATATCTTCTATAAGAATATCAGGGTGAAAATTTCTT CCGGGAAGAGCCCAATTTGATAAGAATACAGTTACAGTCACTTGTATTTG GTGAACTTTGATGCAGAAATATAATTTTAGCTACCCATATGAGCTCCATA CAAAAAGGTGTATGCTAATATAAAAAAATATATTAAAAGTTATGTATACA AAAAATGCCAAAATGTAGTATCCAGACAAGAAATTCAGAAATTTTATAGC ACACTGAAAATTGTTAATCCCATCTTGAATCTTTCCAGAATTTCTCCAAA AAAACAGAAAAATATAAATCATCATTTTAAAAGAAAATTTCCTTTGTTCA AAGTAGCATCGTTTCAACGTGTTATTTTGTACAAATAACCAATTTCATGT TGCAAAAGTCAGCTCTTTTAAAATTACATGGGTATTTATGAAGGAAGGTC TGAGATTTTAGTACTGACCCCCACCCCCTACTGTGAAAGGTCAACTAAAA ACCTCACTCGATAATTTTACTCTTTTCAGGTTCTGACGATGGGCCACTCG TAACCATCATTTTTACAGAGCCAGAGGCTGATGNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNCTTATAAAAACCTCACTCGATAATTTTACTCTTTTCA GGTTCTGACGATGGGCCACTCGTAACCATCATTTTTACAGAGCCAGAGGC TGATGGCAACCATCTTACGTTGACTCTTCCGTACAACAAATTCAAGCCCC TGGACGAAAAGGGTCAAAGTATCCCAATGTCAGGGATAAAAGTTGGTCGA CGTGGTTTTTTCTGGTATCCACATCACAAGAAATACTACGAAGCTTGCGT GACAGCTGTTGCCAAAAAACGAAAAGGTAATTGTTCAGTCCAATAATTTT GATTGATATTTGTGACTACCATTATACTTTTGAATCCAAGACGGTCAAGA CGGTGCTAATGGACCAAATAAACTTCCATCTCTTCTTTGTATTTTC

Coding sequence (CDS) from alignment at scaffold_86:103734..105029-

>TCONS_00072985 ID=TCONS_00072985|Name=TCONS_00072985|organism=Clytia hemisphaerica|type=CDS|length=1035bp|location=Sequence derived from alignment at scaffold_86:103734..105029- (Clytia hemisphaerica)
GCTGATGGCAACCATCTTACGTTGACTCTTCCGTACAACAAATTCAAGCC
CCTGGACGAAAAGGGTCAAAGTATCCCAATGTCAGGGATAAAAGTTGGTC
GACGTGGTTTTTTCTGGTATCCACATCACAAGAAATACTACGAAGCTTGC
GTGACAGCTGTTGCCAAAAAACGAAAAGGTAATTGTTCAGTCCAATAAGT
TCTGACGATGGGCCACTCGTAACCATCATTTTTACAGAGCCAGAGCGCGT
TCTTTTAGATCCAATCAGGCAATTGTTTTTCAAAATGGAAAGAGTTCAGA
GGAATCGAAAAGAAAACCCAAAATTCAAACAAAGTGATGAAATCGGCTGA
TGGCAACCATCTTACGTTGACTCTTCCGTACAACAAATTCAAGCCCCTGG
ACGAAAAGGGTCAAAGTATCCCAATGTCAGGGATAAAAGTTGGTCGACGT
GGTTTTTTCTGGTATCCACATCACAAGAAATACTACGAAGCTTGCGTGAC
AGCTGTTGCCAAAAAACGAAAAGGTAATTGTTCAGTCCAATAAGTTCTGA
CGATGGGCCACTCGTAACCATCATTTTTACAGAGCCAGAGCGCGTTCTTT
TAGATCCAATCAGGCAATTGTTTTTCAAAATGGAAAGAGTTCAGAGGAAT
CGAAAAGAAAACCCAAAATTCAAACAAAGTGATGAAATCGGCTGATGGCA
ACCATCTTACGTTGACTCTTCCGTACAACAAATTCAAGCCCCTGGACGAA
AAGGGTCAAAGTATCCCAATGTCAGGGATAAAAGTTGGTCGACGTGGTTT
TTTCTGGTATCCACATCACAAGAAATACTACGAAGCTTGCGTGACAGCTG
TTGCCAAAAAACGAAAAGGTAATTGTTCAGTCCAATAAGTTCTGACGATG
GGCCACTCGTAACCATCATTTTTACAGAGCCAGAGCGCGTTCTTTTAGAT
CCAATCAGGCAATTGTTTTTCAAAATGGAAAGAGTTCAGAGGAATCGAAA
AGAAAACCCAAAATTCAAACAAAGTGATGAAATCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045267XLOC_045267Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072985-proteinTCONS_00072985-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072985-exon-scaffold_86-1575043694:104930..105029TCONS_00072985-exon-scaffold_86-1575043694:104930..105029Clytia hemisphaericaexon
TCONS_00072985-exon-scaffold_86-1575043694:104154..104200TCONS_00072985-exon-scaffold_86-1575043694:104154..104200Clytia hemisphaericaexon
TCONS_00072985-exon-scaffold_86-1575043694:103734..104031TCONS_00072985-exon-scaffold_86-1575043694:103734..104031Clytia hemisphaericaexon
TCONS_00072985-exon-scaffold_86-1510915933:104930..105029TCONS_00072985-exon-scaffold_86-1510915933:104930..105029Clytia hemisphaericaexon
TCONS_00072985-exon-scaffold_86-1510915933:104154..104200TCONS_00072985-exon-scaffold_86-1510915933:104154..104200Clytia hemisphaericaexon
TCONS_00072985-exon-scaffold_86-1510915933:103734..104031TCONS_00072985-exon-scaffold_86-1510915933:103734..104031Clytia hemisphaericaexon
TCONS_00072985-exon-scaffold_86-1491911889:104930..105029TCONS_00072985-exon-scaffold_86-1491911889:104930..105029Clytia hemisphaericaexon
TCONS_00072985-exon-scaffold_86-1491911889:104154..104200TCONS_00072985-exon-scaffold_86-1491911889:104154..104200Clytia hemisphaericaexon
TCONS_00072985-exon-scaffold_86-1491911889:103734..104031TCONS_00072985-exon-scaffold_86-1491911889:103734..104031Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_86supercontigscaffold_86:103734..105029 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.150329 0 0.170211 0 0 0 0 0 0 0 0 0 0 0 0.197769 0.262211 0 0.240925 0 0 0 0 0 0 0 0 0 0 0 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072985 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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