TCONS_00072977 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072977
Unique NameTCONS_00072977
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2082

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072977 ID=TCONS_00072977|Name=TCONS_00072977|organism=Clytia hemisphaerica|type=transcript|length=2082bp
tttcgctttttcaCCGATGTATTATTTTGACTGTGACACTGAACATTGAA
TTCAATATCACTTTCCTCTATTTTTAAGGTAAAAAGAAACAGATAACAAT
GTATAACAGCATTAAGAAATCATGGTTCATTCCACGTGAATACGAAAATA
GAGATATTCCACCTTTGTTATTGGGTAATTTTTCTGTATCAAGCACTTCA
AGCTACTCCAACGAGCATGCGCAAGGGTTCTTCCACACTGGTAAATATTA
TTTGATCCTacaagaagaaaaggaagaaaatatcGTTCACGTGATCAAAT
TCGATATAGAAGAATTCCAATGGGTACACAGTCGAATAATTATCAGCTTA
CCAAAAACTGAACTAGATGGTCACcgagaaaatgttttcaattcaACCAG
TGGTGTATTGGTTCATATCATACAAACATACCCAACAAACGAACGTCATG
AAACTGTAATGGATCTTTATAATTACAACATTGTTGATCTTTTTGACGAG
CTTAATggcaaagatttaaaaattccTGAATCAACTGAACCAGAATCACC
ACCAAGAACACCAACATTTTATAATCCTGAGGATTTTTCAGAACCCCAAA
ATTCACCAGATCTATCTTTTATGGCTAGTATCTTTGAAGATTCGTACAAT
CAAGATTCGAACGATGAATCTAGTAGACCTACATCGTTTTTTGAATTGCC
CTCAGAATCACAAAGTCAAAATCTAAACAGGGAACATGGTTCACCAGAGT
CACTTAAAGCTGATTTAAATAGAGATTTGCAGCATCATGattcaaaaatt
gatgacgaAGCATCCACTCCAGATCTGTCTTTGACATATGATCAATTATT
CAACTCGATAACTTGTAAATATGCAGAATTTCTTGGCCACGAGAATCCCA
CTTTACTTATAAGCAGTTATTTTACTAAGTATTATGAGAGTAACCAGGAC
GAGAAATACAACTATCTGGATTTTATCAAGATACAAAAAGATCAACTTTG
TCACGAGAGAAGATTGGTTATAGATTTCGAAACCGCTGGTGGATCAGTAT
TTGCGAGAAGGGAATATACTaaggacaaaatatttttctttaaaaggtct
tATATTGAAGATAGTGAAGATATGATAAACCTAAAGATCATTGAATGTGA
TTATTCCGGTAATTTCTTATATTCGTATGATTTGGAATACATTGAATCGT
GGATGTTGTTTAATGTTGTTGATCTTAAACATTCAAATTACATATTTCTT
TATAATGGCTATGGCGAATTAGAGGACCTTGAATTAAGAGCTTTAAAACT
GGAGAATGGGGTTCGTTTGTCaataaatgaaacaaaaaacttCATTCTCT
CTGTGAAGGTACCAGTAGAATATAGAGGAAGGGACTTCAGAGTGCGTGCC
CCTATCAAGAAGTTCGATCGCCTTGTTATGCCACTTTACTGTGCCACAAA
GGATGTATTTCACCCTGAATTTTACATGGCAATTGATTTATCTACTATAG
AAGTTGTTCACCAAATTATTTCTCCTGAAAATTCACATCCTTGCTATTCT
GTAAATTGGAACAATGAAGAAATTGGGATGACTTTTCGTAAAGATAATCT
TCAAAATGCTACGAGACTTGGACCGTTATGTTTTAAAATGGCTTGCAATA
ATATTGAAAGGAAAGAAGAAAtgaaatctttgaaatattTGGCAAGATTT
GCTGTTTTAACATCGTTTACTTATAATGAATTATTTAAAGCAAATCTTCC
ATCTTCCTTATTTAATTATTTGGGGATTGAAAACTAGTTGCTTACTGAAT
ACAAATACATTTTCCactaatatttgaaaaacatttgaaaaatggagGAA
AAACAATAAggaaattcatcaaaatcacCTAATATGAAGCGAACATTATT
AATATTGATAGTTTTGTATCCTTCCCGTTAAAAAATTTATATCTaggcaa
aaatataaaaatgtagtgtttcacgaaaccggccgggtgaaaaaaaaaaa
attctgacccggccgcagactatgggttcatctatatggttcatcGTAAA
GAAAATCAATCTGACCGTTCAAACTATCAAAC
Run BLAST on NCBI

transcript from alignment at scaffold_86:1396054..1398135+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072977 ID=TCONS_00072977|Name=TCONS_00072977|organism=Clytia hemisphaerica|type=transcript|length=2082bp|location=Sequence derived from alignment at scaffold_86:1396054..1398135+ (Clytia hemisphaerica)
tttcgctttttcaCCGATGTATTATTTTGACTGTGACACTGAACATTGAA TTCAATATCACTTTCCTCTATTTTTAAGGTAAAAAGAAACAGATAACAAT GTATAACAGCATTAAGAAATCATGGTTCATTCCACGTGAATACGAAAATA GAGATATTCCACCTTTGTTATTGGGTAATTTTTCTGTATCAAGCACTTCA AGCTACTCCAACGAGCATGCGCAAGGGTTCTTCCACACTGGTAAATATTA TTTGATCCTacaagaagaaaaggaagaaaatatcGTTCACGTGATCAAAT TCGATATAGAAGAATTCCAATGGGTACACAGTCGAATAATTATCAGCTTA CCAAAAACTGAACTAGATGGTCACcgagaaaatgttttcaattcaACCAG TGGTGTATTGGTTCATATCATACAAACATACCCAACAAACGAACGTCATG AAACTGTAATGGATCTTTATAATTACAACATTGTTGATCTTTTTGACGAG CTTAATggcaaagatttaaaaattccTGAATCAACTGAACCAGAATCACC ACCAAGAACACCAACATTTTATAATCCTGAGGATTTTTCAGAACCCCAAA ATTCACCAGATCTATCTTTTATGGCTAGTATCTTTGAAGATTCGTACAAT CAAGATTCGAACGATGAATCTAGTAGACCTACATCGTTTTTTGAATTGCC CTCAGAATCACAAAGTCAAAATCTAAACAGGGAACATGGTTCACCAGAGT CACTTAAAGCTGATTTAAATAGAGATTTGCAGCATCATGattcaaaaatt gatgacgaAGCATCCACTCCAGATCTGTCTTTGACATATGATCAATTATT CAACTCGATAACTTGTAAATATGCAGAATTTCTTGGCCACGAGAATCCCA CTTTACTTATAAGCAGTTATTTTACTAAGTATTATGAGAGTAACCAGGAC GAGAAATACAACTATCTGGATTTTATCAAGATACAAAAAGATCAACTTTG TCACGAGAGAAGATTGGTTATAGATTTCGAAACCGCTGGTGGATCAGTAT TTGCGAGAAGGGAATATACTaaggacaaaatatttttctttaaaaggtct tATATTGAAGATAGTGAAGATATGATAAACCTAAAGATCATTGAATGTGA TTATTCCGGTAATTTCTTATATTCGTATGATTTGGAATACATTGAATCGT GGATGTTGTTTAATGTTGTTGATCTTAAACATTCAAATTACATATTTCTT TATAATGGCTATGGCGAATTAGAGGACCTTGAATTAAGAGCTTTAAAACT GGAGAATGGGGTTCGTTTGTCaataaatgaaacaaaaaacttCATTCTCT CTGTGAAGGTACCAGTAGAATATAGAGGAAGGGACTTCAGAGTGCGTGCC CCTATCAAGAAGTTCGATCGCCTTGTTATGCCACTTTACTGTGCCACAAA GGATGTATTTCACCCTGAATTTTACATGGCAATTGATTTATCTACTATAG AAGTTGTTCACCAAATTATTTCTCCTGAAAATTCACATCCTTGCTATTCT GTAAATTGGAACAATGAAGAAATTGGGATGACTTTTCGTAAAGATAATCT TCAAAATGCTACGAGACTTGGACCGTTATGTTTTAAAATGGCTTGCAATA ATATTGAAAGGAAAGAAGAAAtgaaatctttgaaatattTGGCAAGATTT GCTGTTTTAACATCGTTTACTTATAATGAATTATTTAAAGCAAATCTTCC ATCTTCCTTATTTAATTATTTGGGGATTGAAAACTAGTTGCTTACTGAAT ACAAATACATTTTCCactaatatttgaaaaacatttgaaaaatggagGAA AAACAATAAggaaattcatcaaaatcacCTAATATGAAGCGAACATTATT AATATTGATAGTTTTGTATCCTTCCCGTTAAAAAATTTATATCTaggcaa aaatataaaaatgtagtgtttcacgaaaccggccgggtgaaaaaaaaaaa attctgacccggccgcagactatgggttcatctatatggttcatcGTAAA GAAAATCAATCTGACCGTTCAAACTATCAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045263XLOC_045263Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072977-exon-scaffold_86-1491911889:1396054..1398135TCONS_00072977-exon-scaffold_86-1491911889:1396054..1398135Clytia hemisphaericaexon
TCONS_00072977-exon-scaffold_86-1510915933:1396054..1398135TCONS_00072977-exon-scaffold_86-1510915933:1396054..1398135Clytia hemisphaericaexon
TCONS_00072977-exon-scaffold_86-1575043694:1396054..1398135TCONS_00072977-exon-scaffold_86-1575043694:1396054..1398135Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_86supercontigscaffold_86:1396054..1398135 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.10242 2.78002 0.259712 0.966995 0.55848 0.768995 0.646703 0.83335 0.840609 0.490789 0.357479 0.483755 0.431576 0.570569 0.477371 0.632149 0.349229 0.532352 0.327531 0.152014 0.510373 0.896448 2.00207 2.403 0.723632 0.871777 0.512908 0.391786 0.844143 0.989199
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072977 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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